Wall clock time and date at job start Tue Mar 31 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53011 * 115.56005 * 2 1 4 4 C 1.53000 * 117.50197 * 145.68740 * 2 1 3 5 5 C 1.53001 * 117.50142 * 214.31312 * 2 1 3 6 6 C 1.53002 * 117.49805 * 145.02015 * 5 2 1 7 7 C 1.52998 * 117.49670 * 359.97438 * 5 2 1 8 8 N 1.46498 * 109.46958 * 226.08756 * 7 5 2 9 9 S 1.65610 * 119.99913 * 164.79996 * 8 7 5 10 10 O 1.42098 * 104.27453 * 181.07067 * 9 8 7 11 11 O 1.42099 * 104.27421 * 308.93089 * 9 8 7 12 12 C 1.81394 * 104.44539 * 65.00062 * 9 8 7 13 13 C 1.53004 * 109.47075 * 179.97438 * 12 9 8 14 14 C 1.53001 * 109.47528 * 180.02562 * 13 12 9 15 15 C 1.50696 * 109.47192 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00088 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99937 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99835 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99874 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47355 * 89.99608 * 19 17 15 21 21 H 1.48502 * 109.47308 * 209.99957 * 19 17 15 22 22 H 1.48498 * 109.47326 * 329.99640 * 19 17 15 23 23 H 1.08997 * 109.47381 * 325.70473 * 1 2 3 24 24 H 1.09005 * 109.46942 * 85.70327 * 1 2 3 25 25 H 1.08998 * 109.46765 * 205.70414 * 1 2 3 26 26 H 1.08991 * 109.47111 * 154.29849 * 3 2 1 27 27 H 1.09003 * 109.46876 * 274.29692 * 3 2 1 28 28 H 1.08996 * 109.46842 * 34.29887 * 3 2 1 29 29 H 1.09001 * 117.49628 * 214.98046 * 4 2 1 30 30 H 1.08999 * 117.49389 * 0.02562 * 4 2 1 31 31 H 1.09000 * 109.46933 * 184.91292 * 6 5 2 32 32 H 1.09002 * 109.47332 * 304.91085 * 6 5 2 33 33 H 1.09000 * 109.47420 * 64.91389 * 6 5 2 34 34 H 1.08997 * 109.47353 * 346.08936 * 7 5 2 35 35 H 1.09000 * 109.47138 * 106.09259 * 7 5 2 36 36 H 0.97004 * 120.00370 * 344.80501 * 8 7 5 37 37 H 1.09001 * 109.47928 * 299.99863 * 12 9 8 38 38 H 1.09001 * 109.47399 * 60.00314 * 12 9 8 39 39 H 1.09006 * 109.47413 * 300.00589 * 13 12 9 40 40 H 1.09001 * 109.46650 * 59.99979 * 13 12 9 41 41 H 1.09001 * 109.46798 * 300.00439 * 14 13 12 42 42 H 1.08996 * 109.47156 * 59.99780 * 14 13 12 43 43 H 0.96996 * 119.99893 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3804 0.0000 4 6 2.2365 -1.1209 0.7650 5 6 2.2365 -1.1209 -0.7650 6 6 3.5490 -0.7758 -1.4714 7 6 1.3589 -2.1564 -1.4710 8 7 1.8639 -3.5014 -1.1843 9 16 0.9168 -4.8246 -1.4922 10 8 1.7094 -5.9276 -1.0746 11 8 -0.3184 -4.5272 -0.8558 12 6 0.7188 -4.8295 -3.2953 13 6 -0.1477 -6.0205 -3.7100 14 6 -0.3142 -6.0251 -5.2309 15 6 -1.1681 -7.1977 -5.6392 16 1 -1.5532 -7.8725 -4.8890 17 6 -1.4570 -7.4098 -6.9706 18 7 -0.9877 -6.5884 -7.8842 19 14 -2.5161 -8.8629 -7.4766 20 1 -3.9438 -8.4547 -7.4881 21 1 -2.1196 -9.3154 -8.8343 22 1 -2.3267 -9.9739 -6.5097 23 1 -0.3634 0.8490 0.5790 24 1 -0.3633 0.0770 -1.0248 25 1 -0.3633 -0.9260 0.4457 26 1 3.1822 1.3086 0.4456 27 1 2.2774 1.7413 -1.0248 28 1 1.5810 2.0744 0.5791 29 1 3.1716 -0.8750 1.2683 30 1 1.6112 -1.8586 1.2679 31 1 3.8918 -1.6383 -2.0430 32 1 3.3887 0.0660 -2.1451 33 1 4.3018 -0.5091 -0.7296 34 1 0.3335 -2.0691 -1.1119 35 1 1.3834 -1.9808 -2.5465 36 1 2.7530 -3.6170 -0.8139 37 1 0.2387 -3.9032 -3.6108 38 1 1.6976 -4.9108 -3.7682 39 1 0.3328 -6.9467 -3.3946 40 1 -1.1265 -5.9396 -3.2372 41 1 -0.7945 -5.0989 -5.5466 42 1 0.6647 -6.1060 -5.7034 43 1 -1.1906 -6.7377 -8.8208 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882580375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:30 Heat of formation + Delta-G solvation = -103.526667 kcal Electronic energy + Delta-G solvation = -21340.808942 eV Core-core repulsion = 18125.919158 eV Total energy + Delta-G solvation = -3214.889784 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36848 -38.18502 -37.06430 -36.47109 -35.56931 -34.16869 -31.28072 -29.65939 -29.02003 -28.09851 -26.39601 -25.62605 -22.43646 -21.44371 -20.39434 -19.28985 -18.65162 -18.20434 -17.33710 -17.15041 -16.50583 -16.27740 -16.02078 -15.68524 -15.37331 -14.69423 -14.49722 -14.41000 -14.08032 -13.64546 -13.50660 -13.40573 -13.27645 -13.20046 -13.12985 -13.01301 -12.97690 -12.81168 -12.76003 -12.67231 -12.62535 -12.24954 -12.16126 -11.75793 -11.66369 -11.38269 -11.13500 -10.68627 -10.57916 -10.40053 -10.21514 -8.23208 -6.34169 -0.73972 1.39965 1.40634 1.52050 1.75666 2.39458 2.71870 2.79166 3.10345 3.23926 3.60719 3.73464 3.76845 3.86560 3.93017 4.05760 4.22486 4.33976 4.39291 4.59380 4.65381 4.78782 4.82037 4.83172 4.94890 4.95832 5.01028 5.03683 5.06670 5.10623 5.12613 5.16343 5.22424 5.34625 5.42183 5.44878 5.54466 5.62489 5.78993 6.12598 6.19341 6.81416 7.35153 8.88310 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026502 B = 0.003169 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.255536 B = 8833.335870 C = 9183.167046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 C -0.111 4.111 4 C -0.166 4.166 5 C -0.133 4.133 6 C -0.114 4.114 7 C 0.136 3.864 8 N -1.105 6.105 9 S 2.631 3.369 10 O -0.993 6.993 11 O -0.991 6.991 12 C -0.609 4.609 13 C -0.107 4.107 14 C 0.031 3.969 15 C -0.553 4.553 16 H 0.060 0.940 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.265 1.265 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.425 0.575 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.004 0.996 42 H 0.003 0.997 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.049 16.790 15.391 24.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.114 4.114 3 C -0.168 4.168 4 C -0.203 4.203 5 C -0.135 4.135 6 C -0.171 4.171 7 C 0.010 3.990 8 N -0.866 5.866 9 S 2.726 3.274 10 O -0.984 6.984 11 O -0.981 6.981 12 C -0.740 4.740 13 C -0.146 4.146 14 C -0.007 4.007 15 C -0.591 4.591 16 H 0.078 0.922 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.190 1.190 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.261 0.739 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.022 0.978 42 H 0.021 0.979 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.532 16.258 15.811 24.231 hybrid contribution -0.105 -0.632 -1.036 1.218 sum 8.428 15.627 14.774 23.098 Atomic orbital electron populations 1.21485 0.92315 1.02147 1.02439 1.21769 0.94729 0.91790 1.03128 1.21337 1.00145 0.92908 1.02390 1.23394 1.02880 1.01086 0.92934 1.21756 0.98796 0.99100 0.93830 1.21356 0.93417 1.02036 1.00290 1.21091 0.97564 0.79717 1.00600 1.55254 1.31742 1.19011 1.80598 1.04159 0.73149 0.72597 0.77489 1.93531 1.70039 1.53243 1.81556 1.93526 1.46849 1.84291 1.73408 1.30503 1.10649 1.08102 1.24753 1.21320 0.98362 0.95116 0.99830 1.18957 0.95733 0.95877 0.90122 1.21746 1.32223 1.12220 0.92946 0.92217 1.25929 0.97369 0.99496 0.96730 1.70064 1.46469 1.38991 1.01402 0.85480 0.78896 0.79254 0.77658 1.19678 1.20502 1.18956 0.90947 0.91710 0.93191 0.91811 0.91657 0.91595 0.87467 0.89824 0.91789 0.91395 0.91428 0.90594 0.89638 0.73882 0.83677 0.83524 0.91647 0.91538 0.97791 0.97870 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.37 71.98 0.60 -1.34 16 2 C -0.11 -1.60 2.70 -52.18 -0.14 -1.74 16 3 C -0.11 -1.18 8.86 71.99 0.64 -0.54 16 4 C -0.17 -2.50 9.15 30.60 0.28 -2.22 16 5 C -0.13 -1.98 2.14 -52.18 -0.11 -2.10 16 6 C -0.11 -1.36 8.96 71.98 0.64 -0.71 16 7 C 0.14 2.47 5.78 86.38 0.50 2.97 16 8 N -1.10 -22.34 5.85 -187.50 -1.10 -23.44 16 9 S 2.63 75.06 5.46 -56.49 -0.31 74.75 16 10 O -0.99 -34.47 18.08 -127.65 -2.31 -36.78 16 11 O -0.99 -34.28 17.49 -127.65 -2.23 -36.51 16 12 C -0.61 -18.14 6.07 71.98 0.44 -17.70 16 13 C -0.11 -4.37 5.16 30.60 0.16 -4.21 16 14 C 0.03 1.62 4.97 29.85 0.15 1.77 16 15 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 16 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 17 C 0.00 0.17 5.46 84.66 0.46 0.64 16 18 N -0.93 -55.73 13.29 21.45 0.28 -55.44 16 19 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 H 0.07 0.93 7.92 -2.39 -0.02 0.91 16 24 H 0.06 0.97 8.09 -2.38 -0.02 0.95 16 25 H 0.05 0.90 7.33 -2.39 -0.02 0.88 16 26 H 0.06 0.60 7.90 -2.39 -0.02 0.58 16 27 H 0.06 0.65 7.83 -2.39 -0.02 0.63 16 28 H 0.07 0.64 7.92 -2.39 -0.02 0.62 16 29 H 0.11 1.32 7.94 -2.39 -0.02 1.31 16 30 H 0.08 1.50 8.05 -2.39 -0.02 1.48 16 31 H 0.06 0.77 8.04 -2.39 -0.02 0.75 16 32 H 0.07 0.74 7.77 -2.39 -0.02 0.72 16 33 H 0.07 0.69 7.88 -2.39 -0.02 0.67 16 34 H 0.08 1.54 5.62 -2.39 -0.01 1.52 16 35 H 0.09 1.30 8.13 -2.39 -0.02 1.28 16 36 H 0.42 7.16 8.62 -96.74 -0.83 6.33 16 37 H 0.15 3.75 8.14 -2.39 -0.02 3.73 16 38 H 0.15 3.84 8.14 -2.39 -0.02 3.82 16 39 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 40 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -73.10 361.69 0.35 -72.75 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.14 Total: 14.95 kcal Atomic # 6 Polarization: -60.43 SS G_CDS: 3.85 Total: -56.58 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -0.81 Total: -78.88 kcal Atomic # 8 Polarization: -68.75 SS G_CDS: -4.54 Total: -73.29 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 75.06 SS G_CDS: -0.31 Total: 74.75 kcal Total: -73.10 0.35 -72.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882580375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.780 kcal (2) G-P(sol) polarization free energy of solvation -73.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds