Wall clock time and date at job start Tue Mar 31 2020 07:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.43718 * 2 1 4 4 C 1.34770 * 120.00071 * 61.14398 * 3 2 1 5 5 O 1.21281 * 119.99932 * 354.96069 * 4 3 2 6 6 C 1.50695 * 120.00154 * 174.96151 * 4 3 2 7 7 C 1.53006 * 109.47461 * 180.02562 * 6 4 3 8 8 C 1.50695 * 109.47461 * 179.97438 * 7 6 4 9 9 H 1.08006 * 119.99917 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00124 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00018 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00000 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47127 * 179.97438 * 12 10 8 14 14 H 1.48495 * 109.47191 * 299.99691 * 12 10 8 15 15 H 1.48502 * 109.47254 * 59.99974 * 12 10 8 16 16 C 1.53069 * 109.43809 * 119.91864 * 2 1 3 17 17 C 1.53415 * 108.29270 * 168.21235 * 16 2 1 18 18 O 1.42833 * 108.37024 * 295.25037 * 17 16 2 19 19 C 1.35848 * 117.85885 * 49.14843 * 18 17 16 20 20 C 1.39143 * 118.49803 * 162.98310 * 19 18 17 21 21 C 1.37972 * 120.21856 * 179.81974 * 20 19 18 22 22 C 1.38288 * 119.95510 * 359.97438 * 21 20 19 23 23 C 1.38104 * 119.98389 * 0.07313 * 22 21 20 24 24 C 1.38372 * 121.80711 * 342.92411 * 19 18 17 25 25 H 1.08999 * 109.47469 * 59.99844 * 1 2 3 26 26 H 1.08997 * 109.46816 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46603 * 299.99487 * 1 2 3 28 28 H 0.97006 * 119.99902 * 241.14620 * 3 2 1 29 29 H 1.09002 * 109.47497 * 59.99859 * 6 4 3 30 30 H 1.09003 * 109.47321 * 299.99608 * 6 4 3 31 31 H 1.09002 * 109.47051 * 59.99377 * 7 6 4 32 32 H 1.08998 * 109.46692 * 300.00312 * 7 6 4 33 33 H 0.97000 * 119.99603 * 0.02562 * 11 10 8 34 34 H 1.09003 * 109.70282 * 287.90733 * 16 2 1 35 35 H 1.08998 * 109.70437 * 48.47029 * 16 2 1 36 36 H 1.09000 * 109.68646 * 54.96571 * 17 16 2 37 37 H 1.08997 * 109.68747 * 175.49587 * 17 16 2 38 38 H 1.08004 * 119.89429 * 359.83699 * 20 19 18 39 39 H 1.07997 * 120.02314 * 180.02562 * 21 20 19 40 40 H 1.08003 * 120.00666 * 180.10094 * 22 21 20 41 41 H 1.08004 * 119.84089 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0175 1.3815 0.0000 4 6 1.7106 2.2044 1.0222 5 8 0.9567 1.8312 1.8958 6 6 2.3041 3.5884 1.0798 7 6 1.7981 4.3088 2.3312 8 6 2.3922 5.6925 2.3891 9 1 3.0638 6.0248 1.6113 10 6 2.0791 6.5339 3.4354 11 7 1.2616 6.1291 4.3828 12 14 2.8160 8.2489 3.5075 13 1 2.3248 8.9481 4.7221 14 1 4.2968 8.1497 3.5577 15 1 2.4117 9.0126 2.2997 16 6 2.0394 -0.7199 1.2511 17 6 3.5443 -0.9677 1.0849 18 8 3.7345 -1.8666 -0.0086 19 6 3.0949 -1.5915 -1.1751 20 6 3.5309 -2.2223 -2.3362 21 6 2.9046 -1.9718 -3.5397 22 6 1.8394 -1.0915 -3.5938 23 6 1.4046 -0.4628 -2.4436 24 6 2.0308 -0.7088 -1.2329 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 2.5612 1.7040 -0.7358 29 1 2.0073 4.1482 0.1928 30 1 3.3911 3.5163 1.1171 31 1 2.0953 3.7488 3.2179 32 1 0.7112 4.3808 2.2944 33 1 0.8793 5.2384 4.3455 34 1 1.8641 -0.0988 2.1295 35 1 1.5201 -1.6715 1.3645 36 1 4.0509 -0.0251 0.8777 37 1 3.9468 -1.4080 1.9971 38 1 4.3622 -2.9106 -2.2951 39 1 3.2453 -2.4635 -4.4388 40 1 1.3475 -0.8960 -4.5352 41 1 0.5728 0.2246 -2.4885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887058589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:59 Heat of formation + Delta-G solvation = -64.167364 kcal Electronic energy + Delta-G solvation = -23139.359006 eV Core-core repulsion = 19790.732018 eV Total energy + Delta-G solvation = -3348.626988 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35012 -39.23475 -37.70282 -36.00654 -33.78979 -32.26465 -30.91087 -30.74415 -30.20032 -28.60701 -25.33576 -24.29972 -23.74370 -22.31357 -21.72404 -20.14437 -19.27715 -18.07428 -17.25149 -16.85831 -16.50069 -15.82769 -15.63786 -15.04598 -14.94391 -14.30848 -14.10255 -13.77260 -13.64464 -13.53813 -13.48335 -12.84175 -12.60252 -12.24243 -12.19636 -12.07460 -11.93752 -11.65944 -11.47131 -11.21116 -10.87143 -10.83384 -10.56804 -10.15695 -10.12980 -9.94614 -9.28830 -9.06661 -8.90181 -8.55307 -8.39627 -8.30102 -6.33463 -4.03761 0.99417 1.19161 3.07071 3.10206 3.28640 3.44381 3.46555 3.65417 3.70529 4.26533 4.47969 4.56256 4.60671 4.65033 4.84109 5.03676 5.10082 5.19038 5.27500 5.33201 5.40677 5.44168 5.49696 5.66353 5.73287 5.78912 5.83726 5.99188 6.02920 6.06886 6.09556 6.22285 6.29623 6.34598 6.52108 6.66851 6.72207 7.23335 7.48976 7.54613 7.78426 8.17940 8.47811 8.63370 8.90612 9.69765 11.07484 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027596 B = 0.003429 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.402900 B = 8163.621668 C = 8293.143316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.224 3.776 3 N -0.734 5.734 4 C 0.513 3.487 5 O -0.532 6.532 6 C -0.124 4.124 7 C 0.026 3.974 8 C -0.609 4.609 9 H 0.049 0.951 10 C 0.015 3.985 11 N -0.911 5.911 12 Si 1.069 2.931 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.288 1.288 16 C -0.171 4.171 17 C 0.063 3.937 18 O -0.317 6.317 19 C 0.150 3.850 20 C -0.157 4.157 21 C -0.080 4.080 22 C -0.159 4.159 23 C -0.068 4.068 24 C -0.170 4.170 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.398 0.602 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.014 0.986 32 H 0.014 0.986 33 H 0.272 0.728 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 -17.488 -15.648 23.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.138 3.862 3 N -0.388 5.388 4 C 0.303 3.697 5 O -0.408 6.408 6 C -0.164 4.164 7 C -0.011 4.011 8 C -0.648 4.648 9 H 0.067 0.933 10 C -0.189 4.189 11 N -0.546 5.546 12 Si 0.898 3.102 13 H -0.208 1.208 14 H -0.215 1.215 15 H -0.215 1.215 16 C -0.210 4.210 17 C -0.012 4.012 18 O -0.230 6.230 19 C 0.104 3.896 20 C -0.175 4.175 21 C -0.098 4.098 22 C -0.178 4.178 23 C -0.086 4.086 24 C -0.172 4.172 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.232 0.768 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.034 -16.514 -14.015 21.871 hybrid contribution 0.136 -1.139 -1.356 1.776 sum 3.170 -17.653 -15.371 23.621 Atomic orbital electron populations 1.22265 0.93149 1.02248 1.04070 1.18868 0.94666 0.81478 0.91163 1.46479 1.56102 1.11010 1.25204 1.21517 0.80316 0.87631 0.80284 1.90594 1.35114 1.76476 1.38595 1.21749 1.00896 0.90280 1.03504 1.18997 0.96457 0.94767 0.90912 1.22034 1.31634 0.99606 1.11485 0.93317 1.25841 0.95768 1.04653 0.92627 1.70744 1.28758 1.21483 1.33646 0.83545 0.75682 0.74876 0.76134 1.20757 1.21469 1.21471 1.22712 0.95641 1.02222 1.00400 1.23036 0.96678 0.93530 0.87966 1.85983 1.67244 1.50472 1.19348 1.18761 0.90492 0.94384 0.85994 1.20606 1.02766 1.03939 0.90221 1.20968 0.95044 0.96843 0.96922 1.21038 0.98844 0.99454 0.98415 1.21042 0.98409 0.97923 0.91228 1.19818 0.98618 1.02830 0.95888 0.92299 0.92127 0.89373 0.76822 0.90150 0.90146 0.96769 0.96730 0.91753 0.87331 0.89939 0.91433 0.87276 0.85205 0.85414 0.85780 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 7.94 37.16 0.30 -1.80 16 2 C 0.22 2.90 0.60 -132.90 -0.08 2.82 16 3 N -0.73 -10.19 4.70 -48.62 -0.23 -10.42 16 4 C 0.51 9.29 7.16 -10.99 -0.08 9.21 16 5 O -0.53 -11.32 12.22 5.56 0.07 -11.25 16 6 C -0.12 -2.48 5.64 -27.88 -0.16 -2.64 16 7 C 0.03 0.69 3.57 -27.88 -0.10 0.59 16 8 C -0.61 -17.41 9.11 -34.44 -0.31 -17.72 16 9 H 0.05 1.33 7.74 -52.48 -0.41 0.93 16 10 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 11 N -0.91 -28.62 13.65 55.43 0.76 -27.86 16 12 Si 1.07 25.36 29.90 -169.99 -5.08 20.28 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 16 C -0.17 -2.25 4.86 -26.48 -0.13 -2.38 16 17 C 0.06 0.74 7.00 37.37 0.26 1.00 16 18 O -0.32 -3.96 10.27 -19.26 -0.20 -4.15 16 19 C 0.15 1.79 6.47 -39.20 -0.25 1.53 16 20 C -0.16 -1.58 9.94 -39.34 -0.39 -1.97 16 21 C -0.08 -0.68 10.04 -39.66 -0.40 -1.08 16 22 C -0.16 -1.40 10.04 -39.61 -0.40 -1.80 16 23 C -0.07 -0.69 9.10 -39.53 -0.36 -1.05 16 24 C -0.17 -1.99 4.80 -104.44 -0.50 -2.49 16 25 H 0.06 0.71 6.52 -51.93 -0.34 0.37 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 1.41 6.08 -51.93 -0.32 1.10 16 28 H 0.40 4.76 8.47 -40.82 -0.35 4.42 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.01 0.40 7.97 -51.93 -0.41 -0.02 16 32 H 0.01 0.41 7.97 -51.93 -0.41 0.00 16 33 H 0.27 8.65 7.22 -40.82 -0.29 8.35 16 34 H 0.11 1.69 6.02 -51.93 -0.31 1.37 16 35 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.07 0.83 7.81 -51.93 -0.41 0.42 16 37 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 41 H 0.13 1.20 6.47 -52.48 -0.34 0.87 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -33.20 330.90 -8.16 -41.36 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.76 Total: 4.46 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -2.70 Total: -17.41 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.53 Total: -38.28 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.13 Total: -15.40 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.20 -8.16 -41.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887058589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.804 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds