Wall clock time and date at job start Tue Mar 31 2020 07:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.43718 * 2 1 4 4 C 1.34770 * 120.00071 * 61.14398 * 3 2 1 5 5 O 1.21281 * 119.99932 * 354.96069 * 4 3 2 6 6 C 1.50695 * 120.00154 * 174.96151 * 4 3 2 7 7 C 1.53006 * 109.47461 * 180.02562 * 6 4 3 8 8 C 1.50695 * 109.47461 * 179.97438 * 7 6 4 9 9 H 1.08006 * 119.99917 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00124 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00018 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00000 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47127 * 179.97438 * 12 10 8 14 14 H 1.48495 * 109.47191 * 299.99691 * 12 10 8 15 15 H 1.48502 * 109.47254 * 59.99974 * 12 10 8 16 16 C 1.53069 * 109.43809 * 119.91864 * 2 1 3 17 17 C 1.53415 * 108.29270 * 168.21235 * 16 2 1 18 18 O 1.42833 * 108.37024 * 295.25037 * 17 16 2 19 19 C 1.35848 * 117.85885 * 49.14843 * 18 17 16 20 20 C 1.39143 * 118.49803 * 162.98310 * 19 18 17 21 21 C 1.37972 * 120.21856 * 179.81974 * 20 19 18 22 22 C 1.38288 * 119.95510 * 359.97438 * 21 20 19 23 23 C 1.38104 * 119.98389 * 0.07313 * 22 21 20 24 24 C 1.38372 * 121.80711 * 342.92411 * 19 18 17 25 25 H 1.08999 * 109.47469 * 59.99844 * 1 2 3 26 26 H 1.08997 * 109.46816 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46603 * 299.99487 * 1 2 3 28 28 H 0.97006 * 119.99902 * 241.14620 * 3 2 1 29 29 H 1.09002 * 109.47497 * 59.99859 * 6 4 3 30 30 H 1.09003 * 109.47321 * 299.99608 * 6 4 3 31 31 H 1.09002 * 109.47051 * 59.99377 * 7 6 4 32 32 H 1.08998 * 109.46692 * 300.00312 * 7 6 4 33 33 H 0.97000 * 119.99603 * 0.02562 * 11 10 8 34 34 H 1.09003 * 109.70282 * 287.90733 * 16 2 1 35 35 H 1.08998 * 109.70437 * 48.47029 * 16 2 1 36 36 H 1.09000 * 109.68646 * 54.96571 * 17 16 2 37 37 H 1.08997 * 109.68747 * 175.49587 * 17 16 2 38 38 H 1.08004 * 119.89429 * 359.83699 * 20 19 18 39 39 H 1.07997 * 120.02314 * 180.02562 * 21 20 19 40 40 H 1.08003 * 120.00666 * 180.10094 * 22 21 20 41 41 H 1.08004 * 119.84089 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0175 1.3815 0.0000 4 6 1.7106 2.2044 1.0222 5 8 0.9567 1.8312 1.8958 6 6 2.3041 3.5884 1.0798 7 6 1.7981 4.3088 2.3312 8 6 2.3922 5.6925 2.3891 9 1 3.0638 6.0248 1.6113 10 6 2.0791 6.5339 3.4354 11 7 1.2616 6.1291 4.3828 12 14 2.8160 8.2489 3.5075 13 1 2.3248 8.9481 4.7221 14 1 4.2968 8.1497 3.5577 15 1 2.4117 9.0126 2.2997 16 6 2.0394 -0.7199 1.2511 17 6 3.5443 -0.9677 1.0849 18 8 3.7345 -1.8666 -0.0086 19 6 3.0949 -1.5915 -1.1751 20 6 3.5309 -2.2223 -2.3362 21 6 2.9046 -1.9718 -3.5397 22 6 1.8394 -1.0915 -3.5938 23 6 1.4046 -0.4628 -2.4436 24 6 2.0308 -0.7088 -1.2329 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 2.5612 1.7040 -0.7358 29 1 2.0073 4.1482 0.1928 30 1 3.3911 3.5163 1.1171 31 1 2.0953 3.7488 3.2179 32 1 0.7112 4.3808 2.2944 33 1 0.8793 5.2384 4.3455 34 1 1.8641 -0.0988 2.1295 35 1 1.5201 -1.6715 1.3645 36 1 4.0509 -0.0251 0.8777 37 1 3.9468 -1.4080 1.9971 38 1 4.3622 -2.9106 -2.2951 39 1 3.2453 -2.4635 -4.4388 40 1 1.3475 -0.8960 -4.5352 41 1 0.5728 0.2246 -2.4885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887058589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:58 Heat of formation + Delta-G solvation = -85.381072 kcal Electronic energy + Delta-G solvation = -23140.278901 eV Core-core repulsion = 19790.732018 eV Total energy + Delta-G solvation = -3349.546883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.33983 -40.53888 -38.51061 -37.21872 -35.88632 -33.68456 -32.38514 -31.76711 -31.15100 -29.60974 -27.28931 -25.24733 -24.89068 -23.86592 -22.81073 -21.47957 -20.45764 -19.12864 -18.85946 -18.23644 -17.54194 -17.01643 -16.83954 -16.41371 -15.89253 -15.62003 -15.45150 -15.14970 -14.91469 -14.74620 -14.38129 -14.13446 -14.11547 -13.77226 -13.60793 -13.29869 -12.95555 -12.85811 -12.71133 -12.56520 -12.12990 -12.08493 -12.02169 -11.86888 -11.81346 -11.52758 -10.83329 -10.56828 -10.55558 -10.18991 -9.89286 -9.21959 -8.69477 -6.41418 0.21864 0.42966 1.53853 1.60927 1.63543 1.82060 2.14320 2.24458 2.59411 2.83283 3.16628 3.31416 3.53229 3.64785 3.73831 3.94362 4.11507 4.22105 4.27528 4.33655 4.38777 4.39905 4.45630 4.47875 4.54540 4.62672 4.74393 4.80374 4.91086 4.95216 5.03861 5.15022 5.28131 5.32701 5.37892 5.45439 5.49864 5.56553 5.82050 5.93870 6.17361 6.37447 6.51172 6.54089 7.24341 7.44093 8.70535 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027596 B = 0.003429 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.402900 B = 8163.621668 C = 8293.143316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.223 3.777 3 N -0.712 5.712 4 C 0.518 3.482 5 O -0.570 6.570 6 C -0.115 4.115 7 C 0.030 3.970 8 C -0.620 4.620 9 H 0.064 0.936 10 C -0.044 4.044 11 N -0.940 5.940 12 Si 1.123 2.877 13 H -0.288 1.288 14 H -0.265 1.265 15 H -0.264 1.264 16 C -0.170 4.170 17 C 0.066 3.934 18 O -0.324 6.324 19 C 0.126 3.874 20 C -0.163 4.163 21 C -0.072 4.072 22 C -0.154 4.154 23 C -0.074 4.074 24 C -0.180 4.180 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.410 0.590 29 H 0.100 0.900 30 H 0.099 0.901 31 H -0.019 1.019 32 H -0.019 1.019 33 H 0.252 0.748 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.125 0.875 38 H 0.142 0.858 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.919 -17.765 -18.883 26.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.138 3.862 3 N -0.365 5.365 4 C 0.307 3.693 5 O -0.449 6.449 6 C -0.155 4.155 7 C -0.007 4.007 8 C -0.658 4.658 9 H 0.083 0.917 10 C -0.241 4.241 11 N -0.577 5.577 12 Si 0.943 3.057 13 H -0.213 1.213 14 H -0.189 1.189 15 H -0.189 1.189 16 C -0.209 4.209 17 C -0.009 4.009 18 O -0.238 6.238 19 C 0.081 3.919 20 C -0.181 4.181 21 C -0.089 4.089 22 C -0.172 4.172 23 C -0.093 4.093 24 C -0.182 4.182 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.247 0.753 29 H 0.118 0.882 30 H 0.117 0.883 31 H -0.001 1.001 32 H -0.001 1.001 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.142 0.858 38 H 0.160 0.840 39 H 0.177 0.823 40 H 0.168 0.832 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.558 -16.829 -17.316 24.573 hybrid contribution -0.349 -1.159 -0.449 1.291 sum 4.209 -17.988 -17.765 25.629 Atomic orbital electron populations 1.22201 0.93400 1.02785 1.02919 1.18923 0.94513 0.80567 0.92177 1.46218 1.55084 1.11117 1.24064 1.21109 0.79972 0.87439 0.80793 1.90603 1.36913 1.77061 1.40330 1.21530 1.01859 0.91204 1.00915 1.18821 0.94359 0.94743 0.92802 1.22510 1.31302 1.00356 1.11616 0.91731 1.27620 0.95286 1.09056 0.92147 1.70901 1.30825 1.20654 1.35305 0.82889 0.76153 0.69906 0.76780 1.21321 1.18939 1.18933 1.22643 0.96985 1.01891 0.99358 1.23013 0.95497 0.93598 0.88741 1.85973 1.67577 1.50594 1.19670 1.19063 0.91078 0.95436 0.86346 1.20890 1.03245 1.03870 0.90124 1.21370 0.94159 0.96013 0.97396 1.21385 0.98542 0.98451 0.98846 1.21187 0.98548 0.98339 0.91201 1.19654 0.99450 1.03520 0.95536 0.91154 0.90777 0.92669 0.75313 0.88209 0.88272 1.00059 1.00105 0.93849 0.90194 0.89387 0.92021 0.85762 0.84038 0.82256 0.83175 0.84921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 7.94 71.98 0.57 -3.53 16 2 C 0.22 5.73 0.60 2.90 0.00 5.73 16 3 N -0.71 -19.45 4.70 -426.13 -2.00 -21.46 16 4 C 0.52 19.17 7.16 87.66 0.63 19.79 16 5 O -0.57 -25.68 12.22 -3.03 -0.04 -25.71 16 6 C -0.12 -4.60 5.64 29.85 0.17 -4.43 16 7 C 0.03 1.66 3.57 29.85 0.11 1.77 16 8 C -0.62 -35.66 9.11 25.60 0.23 -35.43 16 9 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 10 C -0.04 -2.63 5.46 84.65 0.46 -2.16 16 11 N -0.94 -61.06 13.65 21.45 0.29 -60.77 16 12 Si 1.12 50.33 29.90 68.60 2.05 52.39 16 13 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 14 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 15 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 16 C -0.17 -4.58 4.86 30.76 0.15 -4.43 16 17 C 0.07 1.56 7.00 72.12 0.50 2.06 16 18 O -0.32 -7.78 10.27 -91.85 -0.94 -8.72 16 19 C 0.13 2.80 6.47 22.52 0.15 2.95 16 20 C -0.16 -2.83 9.94 22.42 0.22 -2.61 16 21 C -0.07 -0.93 10.04 22.22 0.22 -0.71 16 22 C -0.15 -2.12 10.04 22.25 0.22 -1.90 16 23 C -0.07 -1.33 9.10 22.30 0.20 -1.12 16 24 C -0.18 -3.93 4.80 -19.75 -0.09 -4.02 16 25 H 0.07 1.65 6.52 -2.39 -0.02 1.63 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 1.85 6.08 -2.39 -0.01 1.84 16 28 H 0.41 9.19 8.47 -92.70 -0.78 8.40 16 29 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 30 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 31 H -0.02 -1.15 7.97 -2.39 -0.02 -1.17 16 32 H -0.02 -1.18 7.97 -2.39 -0.02 -1.20 16 33 H 0.25 16.99 7.22 -92.71 -0.67 16.32 16 34 H 0.08 2.64 6.02 -2.39 -0.01 2.63 16 35 H 0.09 2.21 8.10 -2.39 -0.02 2.19 16 36 H 0.06 1.50 7.81 -2.39 -0.02 1.48 16 37 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.13 2.18 6.47 -2.91 -0.02 2.16 16 Total: -1.00 -74.99 330.90 3.46 -71.53 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.36 Total: 20.79 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 3.75 Total: -28.04 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -1.71 Total: -82.22 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.98 Total: -34.43 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 2.05 Total: 52.39 kcal Total: -74.99 3.46 -71.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887058589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.852 kcal (2) G-P(sol) polarization free energy of solvation -74.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds