Wall clock time and date at job start Tue Mar 31 2020 06:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34719 * 116.99636 * 2 1 4 4 O 1.21464 * 120.00007 * 0.02562 * 3 2 1 5 5 C 1.47741 * 119.99659 * 180.02562 * 3 2 1 6 6 C 1.39665 * 120.11839 * 0.02562 * 5 3 2 7 7 C 1.37966 * 119.99902 * 179.97438 * 6 5 3 8 8 C 1.50708 * 119.88257 * 179.97438 * 7 6 5 9 9 C 1.38250 * 120.23637 * 359.97438 * 7 6 5 10 10 C 1.38990 * 120.23120 * 0.04375 * 9 7 6 11 11 N 1.39712 * 120.00429 * 179.97438 * 10 9 7 12 12 C 1.46493 * 120.00095 * 185.01232 * 11 10 9 13 13 C 1.52999 * 109.47367 * 184.87237 * 12 11 10 14 14 C 1.50704 * 115.55056 * 330.22977 * 13 12 11 15 15 H 1.07994 * 120.00479 * 118.77624 * 14 13 12 16 16 C 1.37876 * 119.99807 * 298.77892 * 14 13 12 17 17 N 1.31513 * 120.00063 * 184.69891 * 16 14 13 18 18 Si 1.86806 * 120.00116 * 4.70150 * 16 14 13 19 19 H 1.48501 * 109.47061 * 84.85901 * 18 16 14 20 20 H 1.48495 * 109.47383 * 204.86029 * 18 16 14 21 21 H 1.48501 * 109.47065 * 324.86056 * 18 16 14 22 22 C 1.52997 * 117.50371 * 184.55858 * 13 12 11 23 23 C 1.53001 * 60.03139 * 252.47766 * 22 13 12 24 24 C 1.38669 * 119.99311 * 0.23036 * 10 9 7 25 25 H 1.09003 * 109.47052 * 299.99283 * 1 2 3 26 26 H 1.08995 * 109.47820 * 60.00115 * 1 2 3 27 27 H 1.09004 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00084 * 0.02562 * 6 5 3 29 29 H 1.08998 * 109.47160 * 269.98680 * 8 7 6 30 30 H 1.09001 * 109.46721 * 29.98038 * 8 7 6 31 31 H 1.09002 * 109.47047 * 149.97867 * 8 7 6 32 32 H 1.08007 * 119.88917 * 180.02562 * 9 7 6 33 33 H 0.97004 * 119.99692 * 5.01922 * 11 10 9 34 34 H 1.09001 * 109.47262 * 64.87204 * 12 11 10 35 35 H 1.08996 * 109.47613 * 304.87432 * 12 11 10 36 36 H 0.97003 * 119.99739 * 179.97438 * 17 16 14 37 37 H 1.09006 * 117.49593 * 359.97321 * 22 13 12 38 38 H 1.08996 * 117.50261 * 144.97589 * 22 13 12 39 39 H 1.08996 * 117.50103 * 107.50240 * 23 22 13 40 40 H 1.09001 * 117.49265 * 252.51798 * 23 22 13 41 41 H 1.08004 * 120.11068 * 179.72937 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.3020 0.1080 -0.0017 7 6 5.6796 0.1831 -0.0027 8 6 6.5004 -1.0809 -0.0033 9 6 6.3097 1.4136 -0.0033 10 6 5.5598 2.5838 -0.0018 11 7 6.2016 3.8248 -0.0018 12 6 5.4155 5.0559 0.1105 13 6 6.3398 6.2664 -0.0360 14 6 7.7573 6.0624 0.4332 15 1 8.5763 6.1605 -0.2639 16 6 8.0086 5.7505 1.7525 17 7 9.2482 5.6635 2.1830 18 14 6.5883 5.4515 2.9285 19 1 6.1478 4.0373 2.8232 20 1 7.0296 5.7303 4.3187 21 1 5.4584 6.3493 2.5784 22 6 5.7239 7.6533 0.1588 23 6 6.1197 7.1827 -1.2422 24 6 4.1746 2.5195 0.0050 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.8137 -0.8553 -0.0025 29 1 6.6993 -1.3854 1.0242 30 1 5.9513 -1.8704 -0.5164 31 1 7.4442 -0.9009 -0.5182 32 1 7.3885 1.4658 -0.0045 33 1 7.1676 3.8713 -0.0763 34 1 4.9271 5.0876 1.0845 35 1 4.6606 5.0780 -0.6753 36 1 9.4250 5.4444 3.1113 37 1 4.6600 7.7034 0.3910 38 1 6.3438 8.4181 0.6267 39 1 5.3163 6.9234 -1.9317 40 1 7.0002 7.6378 -1.6959 41 1 3.5901 3.4277 0.0106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901435586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:32 Heat of formation + Delta-G solvation = -35.732527 kcal Electronic energy + Delta-G solvation = -22821.564966 eV Core-core repulsion = 19474.171005 eV Total energy + Delta-G solvation = -3347.393961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48112 -39.05676 -37.35926 -36.39796 -34.63038 -32.38826 -32.26524 -29.86572 -27.85399 -26.73507 -26.05940 -25.03807 -23.89286 -21.58323 -20.84887 -20.25674 -19.11371 -17.69185 -17.11770 -16.51752 -16.34564 -15.84599 -15.54485 -15.16388 -14.79458 -13.98208 -13.89343 -13.65002 -13.39240 -13.26149 -13.20569 -12.94459 -12.84281 -12.31284 -12.17281 -11.99118 -11.86593 -11.50860 -11.14303 -10.94447 -10.86746 -10.76513 -10.56600 -10.41210 -10.18398 -9.71569 -9.64709 -9.16779 -8.79176 -8.60875 -8.51395 -6.89807 -6.27294 -4.31514 0.94454 1.80906 2.67783 2.74244 3.26881 3.34161 3.37396 4.05773 4.10826 4.31348 4.74324 4.80404 4.97299 4.99354 5.05069 5.10638 5.32500 5.39115 5.44414 5.53367 5.63940 5.69422 5.70981 5.83905 5.88453 6.02139 6.07372 6.12744 6.14993 6.27827 6.41234 6.48849 6.54830 6.60012 6.63255 6.76536 6.83925 7.05989 7.09571 7.56915 7.78238 7.92627 8.31686 8.53970 8.76146 9.34742 10.82335 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.005036 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.178070 B = 5558.191519 C = 6370.908153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.511 3.489 4 O -0.508 6.508 5 C -0.079 4.079 6 C -0.141 4.141 7 C -0.053 4.053 8 C -0.111 4.111 9 C -0.167 4.167 10 C 0.225 3.775 11 N -0.711 5.711 12 C 0.145 3.855 13 C -0.013 4.013 14 C -0.493 4.493 15 H 0.079 0.921 16 C 0.088 3.912 17 N -0.888 5.888 18 Si 0.873 3.127 19 H -0.268 1.268 20 H -0.296 1.296 21 H -0.259 1.259 22 C -0.192 4.192 23 C -0.180 4.180 24 C -0.152 4.152 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.127 0.873 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.419 0.581 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.267 0.733 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.126 -12.450 -4.169 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.356 3.644 4 O -0.397 6.397 5 C -0.081 4.081 6 C -0.161 4.161 7 C -0.054 4.054 8 C -0.168 4.168 9 C -0.191 4.191 10 C 0.116 3.884 11 N -0.339 5.339 12 C 0.021 3.979 13 C -0.014 4.014 14 C -0.531 4.531 15 H 0.097 0.903 16 C -0.117 4.117 17 N -0.524 5.524 18 Si 0.701 3.299 19 H -0.194 1.194 20 H -0.223 1.223 21 H -0.184 1.184 22 C -0.231 4.231 23 C -0.217 4.217 24 C -0.175 4.175 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.145 0.855 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.261 0.739 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.305 -11.975 -3.992 16.945 hybrid contribution -0.628 0.117 0.802 1.026 sum -11.933 -11.858 -3.190 17.122 Atomic orbital electron populations 1.23243 0.76479 1.03493 1.02555 1.86562 1.23146 1.32939 1.84521 1.21420 0.89439 0.81152 0.72371 1.90815 1.66913 1.36085 1.45878 1.18652 0.87872 0.94605 1.06966 1.20838 0.92998 0.97071 1.05232 1.19510 0.93351 0.94590 0.97921 1.20770 0.99316 0.94372 1.02326 1.20757 0.99937 0.90576 1.07794 1.17799 0.91096 0.86958 0.92542 1.45267 1.10536 1.01000 1.77146 1.21049 0.93053 0.84893 0.98948 1.19517 0.95929 0.86894 0.99041 1.20246 0.88654 1.48980 0.95178 0.90282 1.24919 0.95301 0.93686 0.97787 1.69894 1.18920 1.46890 1.16667 0.87033 0.83345 0.79956 0.79608 1.19367 1.22348 1.18370 1.23068 0.99018 1.01246 0.99723 1.22854 1.01759 1.06392 0.90673 1.20657 0.92897 0.96943 1.07051 0.91945 0.91941 0.88150 0.85477 0.91173 0.91595 0.91420 0.85481 0.73939 0.93535 0.93164 0.92270 0.91186 0.89339 0.90826 0.89685 0.85030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.35 -4.62 9.81 -40.54 -0.40 -5.02 16 3 C 0.51 8.11 7.90 34.61 0.27 8.38 16 4 O -0.51 -9.20 16.13 -19.24 -0.31 -9.51 16 5 C -0.08 -1.29 5.87 -105.01 -0.62 -1.90 16 6 C -0.14 -2.00 9.26 -39.15 -0.36 -2.36 16 7 C -0.05 -0.74 5.87 -104.71 -0.61 -1.36 16 8 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 9 C -0.17 -2.71 9.54 -39.30 -0.37 -3.08 16 10 C 0.22 4.12 6.64 -83.83 -0.56 3.56 16 11 N -0.71 -14.26 4.85 -58.67 -0.28 -14.54 16 12 C 0.15 2.98 4.05 -4.05 -0.02 2.96 16 13 C -0.01 -0.28 1.31 -155.62 -0.20 -0.48 16 14 C -0.49 -12.68 7.69 -34.44 -0.26 -12.94 16 15 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 16 C 0.09 2.35 5.31 -17.82 -0.09 2.25 16 17 N -0.89 -25.38 13.96 55.43 0.77 -24.60 16 18 Si 0.87 21.18 24.17 -169.99 -4.11 17.07 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.26 -6.10 6.20 56.52 0.35 -5.75 16 22 C -0.19 -3.94 9.25 -26.73 -0.25 -4.19 16 23 C -0.18 -3.50 9.89 -26.69 -0.26 -3.77 16 24 C -0.15 -2.73 8.83 -38.95 -0.34 -3.08 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.13 1.53 7.61 -52.49 -0.40 1.13 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 33 H 0.42 8.87 6.90 -40.82 -0.28 8.59 16 34 H 0.05 1.01 5.28 -51.93 -0.27 0.73 16 35 H 0.05 0.95 7.23 -51.93 -0.38 0.57 16 36 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 39 H 0.07 1.28 8.04 -51.93 -0.42 0.87 16 40 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.13 2.44 6.22 -52.48 -0.33 2.12 16 LS Contribution 340.17 15.07 5.13 5.13 Total: -1.00 -29.32 340.17 -7.36 -36.68 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.90 Total: 10.20 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -2.26 Total: -15.40 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.49 Total: -39.15 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.71 Total: -14.53 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.11 Total: 17.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.32 -7.36 -36.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901435586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.948 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds