Wall clock time and date at job start Tue Mar 31 2020 06:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34719 * 116.99636 * 2 1 4 4 O 1.21464 * 120.00007 * 0.02562 * 3 2 1 5 5 C 1.47741 * 119.99659 * 180.02562 * 3 2 1 6 6 C 1.39665 * 120.11839 * 0.02562 * 5 3 2 7 7 C 1.37966 * 119.99902 * 179.97438 * 6 5 3 8 8 C 1.50708 * 119.88257 * 179.97438 * 7 6 5 9 9 C 1.38250 * 120.23637 * 359.97438 * 7 6 5 10 10 C 1.38990 * 120.23120 * 0.04375 * 9 7 6 11 11 N 1.39712 * 120.00429 * 179.97438 * 10 9 7 12 12 C 1.46493 * 120.00095 * 185.01232 * 11 10 9 13 13 C 1.52999 * 109.47367 * 184.87237 * 12 11 10 14 14 C 1.50704 * 115.55056 * 330.22977 * 13 12 11 15 15 H 1.07994 * 120.00479 * 118.77624 * 14 13 12 16 16 C 1.37876 * 119.99807 * 298.77892 * 14 13 12 17 17 N 1.31513 * 120.00063 * 184.69891 * 16 14 13 18 18 Si 1.86806 * 120.00116 * 4.70150 * 16 14 13 19 19 H 1.48501 * 109.47061 * 84.85901 * 18 16 14 20 20 H 1.48495 * 109.47383 * 204.86029 * 18 16 14 21 21 H 1.48501 * 109.47065 * 324.86056 * 18 16 14 22 22 C 1.52997 * 117.50371 * 184.55858 * 13 12 11 23 23 C 1.53001 * 60.03139 * 252.47766 * 22 13 12 24 24 C 1.38669 * 119.99311 * 0.23036 * 10 9 7 25 25 H 1.09003 * 109.47052 * 299.99283 * 1 2 3 26 26 H 1.08995 * 109.47820 * 60.00115 * 1 2 3 27 27 H 1.09004 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00084 * 0.02562 * 6 5 3 29 29 H 1.08998 * 109.47160 * 269.98680 * 8 7 6 30 30 H 1.09001 * 109.46721 * 29.98038 * 8 7 6 31 31 H 1.09002 * 109.47047 * 149.97867 * 8 7 6 32 32 H 1.08007 * 119.88917 * 180.02562 * 9 7 6 33 33 H 0.97004 * 119.99692 * 5.01922 * 11 10 9 34 34 H 1.09001 * 109.47262 * 64.87204 * 12 11 10 35 35 H 1.08996 * 109.47613 * 304.87432 * 12 11 10 36 36 H 0.97003 * 119.99739 * 179.97438 * 17 16 14 37 37 H 1.09006 * 117.49593 * 359.97321 * 22 13 12 38 38 H 1.08996 * 117.50261 * 144.97589 * 22 13 12 39 39 H 1.08996 * 117.50103 * 107.50240 * 23 22 13 40 40 H 1.09001 * 117.49265 * 252.51798 * 23 22 13 41 41 H 1.08004 * 120.11068 * 179.72937 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.3020 0.1080 -0.0017 7 6 5.6796 0.1831 -0.0027 8 6 6.5004 -1.0809 -0.0033 9 6 6.3097 1.4136 -0.0033 10 6 5.5598 2.5838 -0.0018 11 7 6.2016 3.8248 -0.0018 12 6 5.4155 5.0559 0.1105 13 6 6.3398 6.2664 -0.0360 14 6 7.7573 6.0624 0.4332 15 1 8.5763 6.1605 -0.2639 16 6 8.0086 5.7505 1.7525 17 7 9.2482 5.6635 2.1830 18 14 6.5883 5.4515 2.9285 19 1 6.1478 4.0373 2.8232 20 1 7.0296 5.7303 4.3187 21 1 5.4584 6.3493 2.5784 22 6 5.7239 7.6533 0.1588 23 6 6.1197 7.1827 -1.2422 24 6 4.1746 2.5195 0.0050 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.8137 -0.8553 -0.0025 29 1 6.6993 -1.3854 1.0242 30 1 5.9513 -1.8704 -0.5164 31 1 7.4442 -0.9009 -0.5182 32 1 7.3885 1.4658 -0.0045 33 1 7.1676 3.8713 -0.0763 34 1 4.9271 5.0876 1.0845 35 1 4.6606 5.0780 -0.6753 36 1 9.4250 5.4444 3.1113 37 1 4.6600 7.7034 0.3910 38 1 6.3438 8.4181 0.6267 39 1 5.3163 6.9234 -1.9317 40 1 7.0002 7.6378 -1.6959 41 1 3.5901 3.4277 0.0106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901435586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:30 Heat of formation + Delta-G solvation = -52.102241 kcal Electronic energy + Delta-G solvation = -22822.274810 eV Core-core repulsion = 19474.171005 eV Total energy + Delta-G solvation = -3348.103805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.65386 -40.33395 -38.94926 -37.53197 -36.03001 -34.35928 -33.49662 -31.20171 -28.76855 -28.01265 -27.67320 -26.61326 -25.07940 -23.19748 -22.08429 -21.53874 -20.84144 -18.91410 -18.60963 -18.00830 -17.41094 -17.18041 -16.97598 -16.82214 -16.19819 -15.52020 -15.31695 -14.93996 -14.68095 -14.64232 -14.46985 -14.25731 -14.18914 -13.83470 -13.24625 -13.13025 -12.96566 -12.88188 -12.66772 -12.58740 -12.22060 -12.15274 -12.02351 -11.84010 -11.62884 -11.48778 -11.14792 -10.93136 -10.76258 -10.29148 -9.77156 -8.38726 -8.29011 -6.40782 -0.30406 0.58312 1.31321 1.36273 1.41056 1.51515 1.63113 2.29690 2.60148 2.84641 2.97743 3.27316 3.66323 3.86741 4.00861 4.16992 4.26747 4.27780 4.32950 4.35315 4.41636 4.44140 4.48335 4.53571 4.65348 4.72097 4.80610 4.88810 4.92954 4.94465 4.98818 5.14589 5.19709 5.26939 5.32264 5.34295 5.47995 5.61780 5.64101 5.87428 6.23903 6.46802 6.63532 6.67830 6.97721 7.27385 8.77078 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.005036 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.178070 B = 5558.191519 C = 6370.908153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.514 3.486 4 O -0.538 6.538 5 C -0.091 4.091 6 C -0.124 4.124 7 C -0.047 4.047 8 C -0.110 4.110 9 C -0.175 4.175 10 C 0.203 3.797 11 N -0.725 5.725 12 C 0.155 3.845 13 C -0.040 4.040 14 C -0.480 4.480 15 H 0.043 0.957 16 C 0.050 3.950 17 N -0.933 5.933 18 Si 0.922 3.078 19 H -0.270 1.270 20 H -0.305 1.305 21 H -0.246 1.246 22 C -0.188 4.188 23 C -0.161 4.161 24 C -0.169 4.169 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.140 0.860 28 H 0.157 0.843 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.130 0.870 33 H 0.410 0.590 34 H 0.034 0.966 35 H 0.066 0.934 36 H 0.267 0.733 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.223 -14.694 -4.705 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.360 3.640 4 O -0.430 6.430 5 C -0.093 4.093 6 C -0.145 4.145 7 C -0.048 4.048 8 C -0.166 4.166 9 C -0.198 4.198 10 C 0.097 3.903 11 N -0.354 5.354 12 C 0.031 3.969 13 C -0.041 4.041 14 C -0.518 4.518 15 H 0.061 0.939 16 C -0.150 4.150 17 N -0.572 5.572 18 Si 0.749 3.251 19 H -0.196 1.196 20 H -0.233 1.233 21 H -0.170 1.170 22 C -0.226 4.226 23 C -0.198 4.198 24 C -0.192 4.192 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.158 0.842 28 H 0.175 0.825 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.148 0.852 33 H 0.249 0.751 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.444 -14.254 -4.547 20.115 hybrid contribution -0.010 0.684 0.876 1.111 sum -13.455 -13.570 -3.671 19.459 Atomic orbital electron populations 1.23627 0.74233 1.06103 1.02572 1.86539 1.25255 1.31098 1.83747 1.21371 0.89295 0.81564 0.71733 1.90798 1.67478 1.37248 1.47433 1.18823 0.88591 0.94710 1.07131 1.21204 0.93005 0.97531 1.02721 1.19936 0.93752 0.95197 0.95942 1.20865 0.99320 0.92961 1.03490 1.20998 1.00223 0.90941 1.07625 1.17993 0.91471 0.86873 0.94008 1.45124 1.09888 1.01582 1.78855 1.20905 0.92871 0.84372 0.98780 1.19499 0.94394 0.88444 1.01747 1.20301 0.89878 1.47345 0.94275 0.93867 1.25417 0.96591 0.93893 0.99091 1.69999 1.20714 1.49501 1.16962 0.86247 0.81521 0.79864 0.77424 1.19567 1.23305 1.16972 1.23080 0.99972 0.99252 1.00320 1.22909 1.02274 1.04137 0.90446 1.20610 0.92715 0.97404 1.08513 0.92097 0.91870 0.84227 0.82538 0.90032 0.89198 0.90786 0.85200 0.75077 0.94834 0.91624 0.92423 0.88955 0.90396 0.88058 0.90097 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -8.17 9.81 -56.29 -0.55 -8.72 16 3 C 0.51 15.55 7.90 70.33 0.56 16.10 16 4 O -0.54 -19.16 16.13 19.95 0.32 -18.83 16 5 C -0.09 -2.82 5.87 -20.11 -0.12 -2.94 16 6 C -0.12 -3.17 9.26 22.55 0.21 -2.96 16 7 C -0.05 -1.21 5.87 -19.92 -0.12 -1.33 16 8 C -0.11 -1.90 10.01 71.24 0.71 -1.19 16 9 C -0.17 -5.51 9.54 22.45 0.21 -5.29 16 10 C 0.20 7.41 6.64 38.17 0.25 7.67 16 11 N -0.73 -29.42 4.85 -339.54 -1.65 -31.06 16 12 C 0.16 6.33 4.05 86.38 0.35 6.68 16 13 C -0.04 -1.74 1.31 -52.90 -0.07 -1.81 16 14 C -0.48 -25.32 7.69 25.60 0.20 -25.13 16 15 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 16 C 0.05 2.75 5.31 84.65 0.45 3.20 16 17 N -0.93 -55.13 13.96 21.45 0.30 -54.83 16 18 Si 0.92 44.49 24.17 68.60 1.66 46.15 16 19 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.31 -15.02 7.11 99.48 0.71 -14.31 16 21 H -0.25 -11.20 6.20 99.48 0.62 -10.58 16 22 C -0.19 -7.44 9.25 30.59 0.28 -7.16 16 23 C -0.16 -6.03 9.89 30.62 0.30 -5.73 16 24 C -0.17 -6.03 8.83 22.68 0.20 -5.83 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.16 3.06 7.61 -2.91 -0.02 3.04 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 31 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 32 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 33 H 0.41 17.89 6.90 -92.71 -0.64 17.25 16 34 H 0.03 1.44 5.28 -2.39 -0.01 1.43 16 35 H 0.07 2.42 7.23 -2.39 -0.02 2.41 16 36 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.09 3.24 8.14 -2.38 -0.02 3.23 16 38 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.10 3.26 8.04 -2.39 -0.02 3.24 16 40 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.12 4.45 6.22 -2.91 -0.02 4.43 16 Total: -1.00 -64.91 340.17 5.01 -59.90 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.31 Total: 31.46 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 4.62 Total: -24.06 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -1.35 Total: -85.89 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.23 Total: -27.56 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.66 Total: 46.15 kcal Total: -64.91 5.01 -59.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901435586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.797 kcal (2) G-P(sol) polarization free energy of solvation -64.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds