Wall clock time and date at job start Tue Mar 31 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21225 * 120.00096 * 2 1 4 4 C 1.47394 * 120.00046 * 180.02562 * 2 1 3 5 5 C 1.39831 * 120.02907 * 6.20197 * 4 2 1 6 6 C 1.37751 * 119.96928 * 180.29053 * 5 4 2 7 7 C 1.39589 * 120.03128 * 359.43871 * 6 5 4 8 8 C 1.48062 * 119.97317 * 180.27192 * 7 6 5 9 9 O 1.21524 * 120.00457 * 138.31506 * 8 7 6 10 10 N 1.34778 * 119.99935 * 318.32316 * 8 7 6 11 11 C 1.46494 * 120.00329 * 5.25147 * 10 8 7 12 12 C 1.46507 * 119.99822 * 185.25707 * 10 8 7 13 13 H 1.08992 * 109.47254 * 359.97438 * 12 10 8 14 14 C 1.53007 * 109.46893 * 239.99586 * 12 10 8 15 15 C 1.50700 * 109.47202 * 119.99619 * 12 10 8 16 16 H 1.08004 * 119.99957 * 1.25994 * 15 12 10 17 17 C 1.37871 * 120.00029 * 181.25272 * 15 12 10 18 18 N 1.31516 * 120.00037 * 7.55334 * 17 15 12 19 19 Si 1.86802 * 119.99840 * 187.55263 * 17 15 12 20 20 H 1.48496 * 109.47382 * 94.99647 * 19 17 15 21 21 H 1.48507 * 109.46887 * 214.99116 * 19 17 15 22 22 H 1.48494 * 109.47268 * 334.99113 * 19 17 15 23 23 C 1.39548 * 120.05413 * 0.24798 * 7 6 5 24 24 C 1.37793 * 120.03256 * 0.04594 * 23 7 6 25 25 C 1.50698 * 120.01761 * 180.02562 * 24 23 7 26 26 H 1.08999 * 109.47360 * 269.99424 * 1 2 3 27 27 H 1.08997 * 109.46819 * 30.00160 * 1 2 3 28 28 H 1.09004 * 109.46752 * 149.99465 * 1 2 3 29 29 H 1.07996 * 120.01459 * 0.02744 * 5 4 2 30 30 H 1.07999 * 119.98391 * 179.70877 * 6 5 4 31 31 H 1.08999 * 109.47202 * 87.14036 * 11 10 8 32 32 H 1.08999 * 109.47541 * 207.14601 * 11 10 8 33 33 H 1.09006 * 109.47249 * 327.14551 * 11 10 8 34 34 H 1.09002 * 109.46905 * 303.99930 * 14 12 10 35 35 H 1.08999 * 109.46800 * 63.99748 * 14 12 10 36 36 H 1.08995 * 109.46685 * 184.00098 * 14 12 10 37 37 H 0.97003 * 119.99656 * 180.02562 * 18 17 15 38 38 H 1.08004 * 119.98780 * 180.02562 * 23 7 6 39 39 H 1.08992 * 109.47250 * 96.24906 * 25 24 23 40 40 H 1.08998 * 109.46755 * 216.24910 * 25 24 23 41 41 H 1.08996 * 109.47114 * 336.24592 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0498 0.0000 4 6 2.2440 -1.2765 -0.0006 5 6 1.5516 -2.4842 -0.1319 6 6 2.2410 -3.6768 -0.1263 7 6 3.6313 -3.6794 -0.0013 8 6 4.3716 -4.9617 -0.0015 9 8 5.4150 -5.0609 -0.6164 10 7 3.8881 -6.0190 0.6803 11 6 2.5755 -5.9364 1.3257 12 6 4.6752 -7.2509 0.7760 13 1 5.6146 -7.1246 0.2380 14 6 3.8870 -8.4089 0.1604 15 6 4.9620 -7.5525 2.2244 16 1 4.5775 -6.9037 2.9975 17 6 5.7152 -8.6567 2.5626 18 7 6.3070 -9.3618 1.6234 19 14 5.8951 -9.1511 4.3550 20 1 4.8799 -10.1824 4.6884 21 1 7.2548 -9.7036 4.5820 22 1 5.6938 -7.9607 5.2195 23 6 4.3241 -2.4744 0.1233 24 6 3.6363 -1.2804 0.1240 25 6 4.3849 0.0206 0.2579 26 1 -0.3634 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 0.4764 -2.4822 -0.2334 30 1 1.7060 -4.6099 -0.2229 31 1 1.8013 -6.2177 0.6118 32 1 2.5468 -6.6143 2.1788 33 1 2.4018 -4.9157 1.6666 34 1 2.9173 -8.4900 0.6514 35 1 3.7411 -8.2237 -0.9038 36 1 4.4413 -9.3377 0.2949 37 1 6.8365 -10.1389 1.8614 38 1 5.3998 -2.4777 0.2195 39 1 4.5591 0.4431 -0.7315 40 1 3.7960 0.7190 0.8527 41 1 5.3408 -0.1591 0.7497 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906566923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:17 Heat of formation + Delta-G solvation = -40.764061 kcal Electronic energy + Delta-G solvation = -22799.714823 eV Core-core repulsion = 19452.102679 eV Total energy + Delta-G solvation = -3347.612144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54324 -39.36444 -37.69551 -35.46510 -33.36984 -32.70215 -32.03235 -29.76929 -29.26621 -27.05484 -26.23983 -25.27124 -24.56597 -21.85952 -21.29352 -20.05875 -18.69585 -16.92559 -16.77444 -16.30625 -16.02666 -15.50432 -15.32300 -14.68038 -14.57731 -14.39854 -14.07771 -13.53714 -13.42327 -13.25804 -12.65646 -12.55604 -12.46444 -12.37477 -12.31047 -12.11117 -12.03262 -11.69647 -11.46673 -11.11455 -11.00736 -10.88760 -10.76352 -10.31197 -10.24270 -9.70469 -9.29224 -9.18540 -8.95409 -8.75104 -8.45053 -7.70569 -6.13489 -4.19751 0.39905 1.27801 2.13011 3.22445 3.23527 3.31432 3.33786 3.67121 3.84107 3.94457 4.35521 4.59703 4.71455 4.75069 4.89030 5.08959 5.14119 5.18617 5.22017 5.30189 5.47911 5.57648 5.68409 5.70411 5.73524 5.85860 5.91396 6.08527 6.11643 6.29879 6.34168 6.43434 6.65191 6.72021 6.76642 6.95581 7.29850 7.33508 7.46540 7.64176 7.90324 8.10621 8.40846 8.74971 8.92455 9.45889 10.93372 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026088 B = 0.003639 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.012581 B = 7692.615072 C = 7774.593098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.394 3.606 3 O -0.456 6.456 4 C -0.171 4.171 5 C -0.078 4.078 6 C -0.117 4.117 7 C -0.073 4.073 8 C 0.540 3.460 9 O -0.541 6.541 10 N -0.582 5.582 11 C 0.076 3.924 12 C 0.257 3.743 13 H 0.067 0.933 14 C -0.143 4.143 15 C -0.531 4.531 16 H 0.061 0.939 17 C 0.067 3.933 18 N -0.884 5.884 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.087 4.087 24 C -0.030 4.030 25 C -0.121 4.121 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.015 0.985 36 H 0.085 0.915 37 H 0.264 0.736 38 H 0.137 0.863 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.270 13.937 -2.062 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.273 3.727 3 O -0.332 6.332 4 C -0.172 4.172 5 C -0.096 4.096 6 C -0.135 4.135 7 C -0.076 4.076 8 C 0.326 3.674 9 O -0.420 6.420 10 N -0.312 5.312 11 C -0.068 4.068 12 C 0.157 3.843 13 H 0.085 0.915 14 C -0.202 4.202 15 C -0.569 4.569 16 H 0.079 0.921 17 C -0.136 4.136 18 N -0.522 5.522 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.106 4.106 24 C -0.031 4.031 25 C -0.177 4.177 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.154 0.846 30 H 0.159 0.841 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.034 0.966 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.155 0.845 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.277 14.216 -2.396 18.935 hybrid contribution -0.029 -0.647 1.025 1.212 sum -12.306 13.569 -1.371 18.369 Atomic orbital electron populations 1.22244 0.93861 1.04859 1.04784 1.22521 0.91548 0.87607 0.70981 1.90483 1.71526 1.34633 1.36577 1.20395 0.93984 0.94889 1.07956 1.21345 0.99928 0.91070 0.97253 1.21577 0.93155 0.98974 0.99800 1.20496 0.94103 0.94686 0.98343 1.18326 0.85123 0.83457 0.80477 1.90753 1.23719 1.83732 1.43805 1.48188 1.18838 1.14791 1.49376 1.21922 0.84541 1.01952 0.98337 1.19008 0.90809 0.77501 0.97002 0.91481 1.22025 0.99392 1.02567 0.96192 1.21297 1.33829 1.10363 0.91429 0.92107 1.24894 0.94714 0.96353 0.97654 1.69951 1.31476 1.18346 1.32397 0.86504 0.77531 0.78772 0.84763 1.20567 1.21099 1.19861 1.21140 1.00699 0.90140 0.98631 1.20137 0.92482 0.95782 0.94662 1.21092 0.99530 0.93931 1.03177 0.88453 0.89519 0.89435 0.84635 0.84137 0.93581 0.89873 0.92117 0.95014 0.96576 0.89640 0.92611 0.84548 0.90596 0.89158 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.26 9.87 36.01 0.36 -0.90 16 2 C 0.39 4.08 7.16 -30.58 -0.22 3.86 16 3 O -0.46 -5.90 14.06 5.61 0.08 -5.82 16 4 C -0.17 -1.99 5.87 -104.99 -0.62 -2.60 16 5 C -0.08 -0.79 9.39 -39.16 -0.37 -1.16 16 6 C -0.12 -1.48 7.54 -39.26 -0.30 -1.77 16 7 C -0.07 -1.19 5.17 -104.87 -0.54 -1.73 16 8 C 0.54 11.34 7.32 -12.23 -0.09 11.25 16 9 O -0.54 -13.55 16.28 5.34 0.09 -13.46 16 10 N -0.58 -12.21 2.75 -176.29 -0.49 -12.69 16 11 C 0.08 1.22 7.80 59.84 0.47 1.69 16 12 C 0.26 6.45 2.55 -69.07 -0.18 6.27 16 13 H 0.07 1.97 6.91 -51.93 -0.36 1.62 16 14 C -0.14 -3.32 9.10 37.16 0.34 -2.98 16 15 C -0.53 -14.07 7.97 -34.44 -0.27 -14.35 16 16 H 0.06 1.59 7.35 -52.48 -0.39 1.20 16 17 C 0.07 1.80 5.19 -17.82 -0.09 1.71 16 18 N -0.88 -24.84 11.76 55.43 0.65 -24.19 16 19 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C -0.09 -1.34 9.26 -39.26 -0.36 -1.70 16 24 C -0.03 -0.40 5.91 -104.20 -0.62 -1.02 16 25 C -0.12 -1.45 8.74 36.00 0.31 -1.13 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.39 6.26 -51.93 -0.32 0.07 16 29 H 0.14 0.88 6.23 -52.49 -0.33 0.55 16 30 H 0.14 1.58 5.58 -52.49 -0.29 1.29 16 31 H 0.05 0.62 7.04 -51.93 -0.37 0.25 16 32 H 0.08 1.42 7.04 -51.93 -0.37 1.05 16 33 H 0.06 0.84 5.76 -51.93 -0.30 0.54 16 34 H 0.03 0.66 7.54 -51.93 -0.39 0.27 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 2.18 6.38 -51.93 -0.33 1.84 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.14 2.14 8.06 -52.48 -0.42 1.71 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 1.11 5.81 -51.93 -0.30 0.80 16 41 H 0.06 0.69 8.04 -51.93 -0.42 0.27 16 LS Contribution 333.42 15.07 5.02 5.02 Total: -1.00 -32.10 333.42 -7.25 -39.35 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.41 Total: 0.74 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -2.18 Total: -4.58 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.17 Total: -36.88 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.17 Total: -19.28 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.10 -7.25 -39.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906566923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.413 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds