Wall clock time and date at job start Tue Mar 31 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21225 * 120.00096 * 2 1 4 4 C 1.47394 * 120.00046 * 180.02562 * 2 1 3 5 5 C 1.39831 * 120.02907 * 6.20197 * 4 2 1 6 6 C 1.37751 * 119.96928 * 180.29053 * 5 4 2 7 7 C 1.39589 * 120.03128 * 359.43871 * 6 5 4 8 8 C 1.48062 * 119.97317 * 180.27192 * 7 6 5 9 9 O 1.21524 * 120.00457 * 138.31506 * 8 7 6 10 10 N 1.34778 * 119.99935 * 318.32316 * 8 7 6 11 11 C 1.46494 * 120.00329 * 5.25147 * 10 8 7 12 12 C 1.46507 * 119.99822 * 185.25707 * 10 8 7 13 13 H 1.08992 * 109.47254 * 359.97438 * 12 10 8 14 14 C 1.53007 * 109.46893 * 239.99586 * 12 10 8 15 15 C 1.50700 * 109.47202 * 119.99619 * 12 10 8 16 16 H 1.08004 * 119.99957 * 1.25994 * 15 12 10 17 17 C 1.37871 * 120.00029 * 181.25272 * 15 12 10 18 18 N 1.31516 * 120.00037 * 7.55334 * 17 15 12 19 19 Si 1.86802 * 119.99840 * 187.55263 * 17 15 12 20 20 H 1.48496 * 109.47382 * 94.99647 * 19 17 15 21 21 H 1.48507 * 109.46887 * 214.99116 * 19 17 15 22 22 H 1.48494 * 109.47268 * 334.99113 * 19 17 15 23 23 C 1.39548 * 120.05413 * 0.24798 * 7 6 5 24 24 C 1.37793 * 120.03256 * 0.04594 * 23 7 6 25 25 C 1.50698 * 120.01761 * 180.02562 * 24 23 7 26 26 H 1.08999 * 109.47360 * 269.99424 * 1 2 3 27 27 H 1.08997 * 109.46819 * 30.00160 * 1 2 3 28 28 H 1.09004 * 109.46752 * 149.99465 * 1 2 3 29 29 H 1.07996 * 120.01459 * 0.02744 * 5 4 2 30 30 H 1.07999 * 119.98391 * 179.70877 * 6 5 4 31 31 H 1.08999 * 109.47202 * 87.14036 * 11 10 8 32 32 H 1.08999 * 109.47541 * 207.14601 * 11 10 8 33 33 H 1.09006 * 109.47249 * 327.14551 * 11 10 8 34 34 H 1.09002 * 109.46905 * 303.99930 * 14 12 10 35 35 H 1.08999 * 109.46800 * 63.99748 * 14 12 10 36 36 H 1.08995 * 109.46685 * 184.00098 * 14 12 10 37 37 H 0.97003 * 119.99656 * 180.02562 * 18 17 15 38 38 H 1.08004 * 119.98780 * 180.02562 * 23 7 6 39 39 H 1.08992 * 109.47250 * 96.24906 * 25 24 23 40 40 H 1.08998 * 109.46755 * 216.24910 * 25 24 23 41 41 H 1.08996 * 109.47114 * 336.24592 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0498 0.0000 4 6 2.2440 -1.2765 -0.0006 5 6 1.5516 -2.4842 -0.1319 6 6 2.2410 -3.6768 -0.1263 7 6 3.6313 -3.6794 -0.0013 8 6 4.3716 -4.9617 -0.0015 9 8 5.4150 -5.0609 -0.6164 10 7 3.8881 -6.0190 0.6803 11 6 2.5755 -5.9364 1.3257 12 6 4.6752 -7.2509 0.7760 13 1 5.6146 -7.1246 0.2380 14 6 3.8870 -8.4089 0.1604 15 6 4.9620 -7.5525 2.2244 16 1 4.5775 -6.9037 2.9975 17 6 5.7152 -8.6567 2.5626 18 7 6.3070 -9.3618 1.6234 19 14 5.8951 -9.1511 4.3550 20 1 4.8799 -10.1824 4.6884 21 1 7.2548 -9.7036 4.5820 22 1 5.6938 -7.9607 5.2195 23 6 4.3241 -2.4744 0.1233 24 6 3.6363 -1.2804 0.1240 25 6 4.3849 0.0206 0.2579 26 1 -0.3634 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 0.4764 -2.4822 -0.2334 30 1 1.7060 -4.6099 -0.2229 31 1 1.8013 -6.2177 0.6118 32 1 2.5468 -6.6143 2.1788 33 1 2.4018 -4.9157 1.6666 34 1 2.9173 -8.4900 0.6514 35 1 3.7411 -8.2237 -0.9038 36 1 4.4413 -9.3377 0.2949 37 1 6.8365 -10.1389 1.8614 38 1 5.3998 -2.4777 0.2195 39 1 4.5591 0.4431 -0.7315 40 1 3.7960 0.7190 0.8527 41 1 5.3408 -0.1591 0.7497 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906566923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:16 Heat of formation + Delta-G solvation = -60.235150 kcal Electronic energy + Delta-G solvation = -22800.559153 eV Core-core repulsion = 19452.102679 eV Total energy + Delta-G solvation = -3348.456474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.65236 -40.64637 -38.85151 -37.24266 -35.02296 -33.85948 -33.21534 -31.25144 -30.31100 -28.11726 -27.56799 -27.30069 -25.79521 -23.09488 -22.64448 -21.07789 -20.22259 -18.54703 -17.94631 -17.80753 -17.40656 -16.95279 -16.34337 -16.13289 -15.88036 -15.51391 -15.14927 -14.98939 -14.44991 -14.40319 -14.31509 -13.87554 -13.74122 -13.58401 -13.25185 -13.23054 -12.95062 -12.94040 -12.80342 -12.76041 -12.66292 -12.64319 -12.24936 -12.13258 -11.99429 -11.25788 -10.91685 -10.52976 -10.44259 -10.07332 -9.77587 -9.40953 -8.18548 -6.33289 -0.61736 0.28150 1.18141 1.41440 1.42350 1.52822 1.82926 2.23365 2.44077 2.71862 3.07328 3.10712 3.53698 3.70148 3.77688 4.09883 4.17838 4.29258 4.41036 4.48962 4.62014 4.65155 4.71593 4.73287 4.76110 4.77387 4.87728 4.91497 4.99274 5.02098 5.07776 5.17386 5.20396 5.30981 5.45088 5.47826 5.53483 5.63199 5.75712 5.97632 6.10540 6.56472 6.70326 6.74004 7.20969 7.39957 8.87972 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026088 B = 0.003639 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.012581 B = 7692.615072 C = 7774.593098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.395 3.605 3 O -0.487 6.487 4 C -0.170 4.170 5 C -0.052 4.052 6 C -0.110 4.110 7 C -0.096 4.096 8 C 0.532 3.468 9 O -0.601 6.601 10 N -0.587 5.587 11 C 0.071 3.929 12 C 0.260 3.740 13 H 0.008 0.992 14 C -0.128 4.128 15 C -0.542 4.542 16 H 0.062 0.938 17 C 0.017 3.983 18 N -0.918 5.918 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.288 1.288 22 H -0.269 1.269 23 C -0.105 4.105 24 C -0.042 4.042 25 C -0.117 4.117 26 H 0.117 0.883 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.190 0.810 30 H 0.161 0.839 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.022 0.978 36 H 0.059 0.941 37 H 0.265 0.735 38 H 0.114 0.886 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.526 14.974 -1.020 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.276 3.724 3 O -0.365 6.365 4 C -0.171 4.171 5 C -0.070 4.070 6 C -0.128 4.128 7 C -0.099 4.099 8 C 0.321 3.679 9 O -0.484 6.484 10 N -0.316 5.316 11 C -0.070 4.070 12 C 0.158 3.842 13 H 0.026 0.974 14 C -0.187 4.187 15 C -0.580 4.580 16 H 0.081 0.919 17 C -0.183 4.183 18 N -0.556 5.556 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.214 1.214 22 H -0.193 1.193 23 C -0.124 4.124 24 C -0.042 4.042 25 C -0.173 4.173 26 H 0.135 0.865 27 H 0.111 0.889 28 H 0.132 0.868 29 H 0.207 0.793 30 H 0.179 0.821 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.588 15.263 -1.337 22.581 hybrid contribution 1.276 -0.872 0.658 1.680 sum -15.312 14.391 -0.679 21.024 Atomic orbital electron populations 1.22294 0.89745 1.06535 1.06461 1.23075 0.93518 0.86230 0.69586 1.90488 1.72630 1.35442 1.37976 1.20834 0.93282 0.96734 1.06232 1.21830 1.02178 0.88991 0.93976 1.21790 0.91178 1.01023 0.98837 1.20152 0.95700 0.91962 1.02081 1.19108 0.84675 0.84879 0.79274 1.90704 1.26556 1.84845 1.46288 1.48169 1.20254 1.13554 1.49616 1.22233 0.82625 1.03516 0.98671 1.18615 0.89761 0.80001 0.95845 0.97368 1.21812 0.99767 1.00379 0.96752 1.21556 1.33918 1.10467 0.92058 0.91935 1.25748 0.94289 0.96347 1.01920 1.70096 1.32162 1.18797 1.34571 0.85440 0.77458 0.78642 0.79469 1.19065 1.21410 1.19309 1.21022 0.99967 0.91051 1.00338 1.20272 0.93831 0.95057 0.95047 1.21058 0.99590 0.93476 1.03199 0.86474 0.88932 0.86751 0.79313 0.82133 0.89994 0.90807 0.89562 0.92450 0.95860 0.92256 0.92577 0.86778 0.90590 0.89138 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 9.87 71.24 0.70 -0.65 16 2 C 0.39 6.76 7.16 28.10 0.20 6.96 16 3 O -0.49 -11.61 14.06 -2.86 -0.04 -11.65 16 4 C -0.17 -3.40 5.87 -20.11 -0.12 -3.52 16 5 C -0.05 -0.80 9.39 22.54 0.21 -0.59 16 6 C -0.11 -2.41 7.54 22.48 0.17 -2.24 16 7 C -0.10 -3.12 5.17 -20.03 -0.10 -3.22 16 8 C 0.53 23.26 7.32 86.85 0.64 23.90 16 9 O -0.60 -32.52 16.28 -3.79 -0.06 -32.58 16 10 N -0.59 -24.92 2.75 -829.96 -2.28 -27.21 16 11 C 0.07 2.11 7.80 127.77 1.00 3.11 16 12 C 0.26 13.54 2.55 44.25 0.11 13.65 16 13 H 0.01 0.53 6.91 -2.39 -0.02 0.51 16 14 C -0.13 -6.04 9.10 71.98 0.65 -5.39 16 15 C -0.54 -29.31 7.97 25.60 0.20 -29.11 16 16 H 0.06 3.28 7.35 -2.91 -0.02 3.26 16 17 C 0.02 0.92 5.19 84.65 0.44 1.36 16 18 N -0.92 -53.29 11.76 21.45 0.25 -53.04 16 19 Si 0.97 42.61 29.54 68.60 2.03 44.63 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 C -0.10 -3.33 9.26 22.48 0.21 -3.12 16 24 C -0.04 -1.09 5.91 -19.59 -0.12 -1.20 16 25 C -0.12 -2.82 8.74 71.24 0.62 -2.20 16 26 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.11 0.20 6.26 -2.38 -0.01 0.18 16 29 H 0.19 0.93 6.23 -2.91 -0.02 0.91 16 30 H 0.16 2.85 5.58 -2.91 -0.02 2.84 16 31 H 0.08 1.86 7.04 -2.39 -0.02 1.84 16 32 H 0.07 2.35 7.04 -2.39 -0.02 2.34 16 33 H 0.09 2.12 5.76 -2.38 -0.01 2.11 16 34 H 0.06 2.34 7.54 -2.39 -0.02 2.32 16 35 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 3.10 6.38 -2.39 -0.02 3.08 16 37 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 38 H 0.11 3.98 8.06 -2.91 -0.02 3.95 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.09 2.18 5.81 -2.39 -0.01 2.17 16 41 H 0.06 1.47 8.04 -2.39 -0.02 1.45 16 Total: -1.00 -76.57 333.42 5.76 -70.81 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 1.05 Total: 11.30 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 4.82 Total: -2.26 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -2.03 Total: -80.24 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -0.10 Total: -44.23 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -76.57 5.76 -70.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906566923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.570 kcal (2) G-P(sol) polarization free energy of solvation -76.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds