Wall clock time and date at job start Tue Mar 31 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21226 * 120.00159 * 2 1 4 4 C 1.47397 * 120.00081 * 179.97438 * 2 1 3 5 5 C 1.39819 * 120.02830 * 5.89040 * 4 2 1 6 6 C 1.37754 * 119.97617 * 179.78897 * 5 4 2 7 7 C 1.39586 * 120.02203 * 0.48892 * 6 5 4 8 8 C 1.48070 * 119.97177 * 179.76678 * 7 6 5 9 9 O 1.21519 * 120.00309 * 202.51618 * 8 7 6 10 10 N 1.34780 * 119.99818 * 22.51023 * 8 7 6 11 11 C 1.46498 * 119.99941 * 4.56537 * 10 8 7 12 12 C 1.46503 * 119.99927 * 184.55787 * 10 8 7 13 13 H 1.09003 * 109.46939 * 0.02562 * 12 10 8 14 14 C 1.53007 * 109.46894 * 120.00093 * 12 10 8 15 15 C 1.50699 * 109.47398 * 240.00008 * 12 10 8 16 16 H 1.07997 * 119.99516 * 0.02562 * 15 12 10 17 17 C 1.37868 * 120.00108 * 179.97438 * 15 12 10 18 18 N 1.31516 * 120.00077 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 120.00106 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46745 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47071 * 120.00082 * 19 17 15 22 22 H 1.48496 * 109.47009 * 240.00398 * 19 17 15 23 23 C 1.39548 * 120.06050 * 359.49351 * 7 6 5 24 24 C 1.37794 * 120.02575 * 0.26639 * 23 7 6 25 25 C 1.50701 * 120.01730 * 179.97438 * 24 23 7 26 26 H 1.08993 * 109.47168 * 239.99959 * 1 2 3 27 27 H 1.08996 * 109.47162 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.46785 * 119.99595 * 1 2 3 29 29 H 1.08004 * 120.01113 * 0.05060 * 5 4 2 30 30 H 1.07995 * 119.98862 * 180.25663 * 6 5 4 31 31 H 1.09006 * 109.46807 * 263.99115 * 11 10 8 32 32 H 1.08994 * 109.47159 * 23.98656 * 11 10 8 33 33 H 1.09002 * 109.47223 * 143.99535 * 11 10 8 34 34 H 1.08995 * 109.47044 * 300.00629 * 14 12 10 35 35 H 1.08996 * 109.46753 * 179.97438 * 14 12 10 36 36 H 1.09009 * 109.46601 * 60.00144 * 14 12 10 37 37 H 0.97004 * 120.00136 * 180.02562 * 18 17 15 38 38 H 1.07994 * 119.99042 * 180.25557 * 23 7 6 39 39 H 1.08998 * 109.46707 * 97.16975 * 25 24 23 40 40 H 1.09001 * 109.47638 * 217.16856 * 25 24 23 41 41 H 1.09004 * 109.46811 * 337.17247 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0498 0.0000 4 6 2.2440 -1.2765 0.0006 5 6 1.5511 -2.4846 -0.1231 6 6 2.2413 -3.6767 -0.1268 7 6 3.6311 -3.6794 0.0031 8 6 4.3714 -4.9617 0.0042 9 8 5.4748 -5.0260 0.5093 10 7 3.8215 -6.0578 -0.5551 11 6 2.5365 -5.9584 -1.2516 12 6 4.5088 -7.3486 -0.4665 13 1 5.4416 -7.2265 0.0841 14 6 3.6146 -8.3535 0.2625 15 6 4.8066 -7.8554 -1.8541 16 1 4.5136 -7.2739 -2.7158 17 6 5.4540 -9.0608 -2.0236 18 7 5.8113 -9.7686 -0.9743 19 14 5.8239 -9.6887 -3.7436 20 1 5.3232 -8.7130 -4.7449 21 1 7.2907 -9.8547 -3.9053 22 1 5.1521 -10.9972 -3.9479 23 6 4.3240 -2.4744 0.1263 24 6 3.6363 -1.2803 0.1253 25 6 4.3847 0.0208 0.2589 26 1 -0.3633 -0.5138 0.8899 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5138 -0.8901 29 1 0.4754 -2.4829 -0.2200 30 1 1.7066 -4.6097 -0.2265 31 1 1.7321 -6.2396 -0.5719 32 1 2.3849 -4.9334 -1.5897 33 1 2.5365 -6.6284 -2.1114 34 1 3.3991 -7.9869 1.2661 35 1 4.1258 -9.3140 0.3279 36 1 2.6816 -8.4756 -0.2879 37 1 6.2671 -10.6165 -1.0935 38 1 5.3996 -2.4776 0.2226 39 1 4.5456 0.4505 -0.7298 40 1 3.8027 0.7142 0.8661 41 1 5.3472 -0.1611 0.7370 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906566924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:20 Heat of formation + Delta-G solvation = -26.121057 kcal Electronic energy + Delta-G solvation = -22803.213582 eV Core-core repulsion = 19456.236406 eV Total energy + Delta-G solvation = -3346.977176 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.58246 -39.41240 -37.67190 -35.54789 -33.51593 -32.63033 -32.00384 -29.73461 -29.30569 -27.19715 -26.22914 -25.29544 -24.54747 -21.78256 -21.28761 -20.04272 -18.79741 -16.97338 -16.68029 -16.37128 -15.97549 -15.42534 -15.32189 -14.61369 -14.55556 -14.44234 -14.14276 -13.55882 -13.37979 -13.30886 -12.68044 -12.57398 -12.49969 -12.45148 -12.31509 -12.10565 -11.99917 -11.63672 -11.47224 -11.11991 -10.89277 -10.81489 -10.61955 -10.30512 -10.20675 -9.71320 -9.26595 -9.13005 -8.98824 -8.71502 -8.47696 -7.69469 -6.11798 -4.19985 0.36766 1.28119 2.10006 3.23286 3.25278 3.31895 3.34618 3.73886 3.84154 3.99047 4.35884 4.60743 4.71721 4.80662 4.87882 5.07280 5.10502 5.19928 5.21868 5.31483 5.45267 5.58158 5.63956 5.69746 5.74933 5.83324 5.89274 6.08332 6.11379 6.29190 6.33556 6.43349 6.68857 6.73387 6.78842 6.98903 7.32495 7.32766 7.46239 7.65860 7.95317 8.13093 8.40805 8.75785 8.92922 9.46588 10.93665 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028440 B = 0.003580 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.299923 B = 7818.649347 C = 8003.722361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.393 3.607 3 O -0.455 6.455 4 C -0.168 4.168 5 C -0.080 4.080 6 C -0.131 4.131 7 C -0.080 4.080 8 C 0.538 3.462 9 O -0.542 6.542 10 N -0.581 5.581 11 C 0.065 3.935 12 C 0.257 3.743 13 H 0.065 0.935 14 C -0.147 4.147 15 C -0.527 4.527 16 H 0.061 0.939 17 C 0.065 3.935 18 N -0.887 5.887 19 Si 0.899 3.101 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.083 4.083 24 C -0.035 4.035 25 C -0.120 4.120 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.135 0.865 30 H 0.158 0.842 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.012 0.988 35 H 0.095 0.905 36 H 0.030 0.970 37 H 0.263 0.737 38 H 0.139 0.861 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.516 14.733 1.323 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.272 3.728 3 O -0.331 6.331 4 C -0.170 4.170 5 C -0.098 4.098 6 C -0.149 4.149 7 C -0.083 4.083 8 C 0.325 3.675 9 O -0.421 6.421 10 N -0.311 5.311 11 C -0.078 4.078 12 C 0.157 3.843 13 H 0.083 0.917 14 C -0.205 4.205 15 C -0.565 4.565 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.525 5.525 19 Si 0.727 3.273 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.102 4.102 24 C -0.035 4.035 25 C -0.176 4.176 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.153 0.847 30 H 0.176 0.824 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.031 0.969 35 H 0.113 0.887 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.157 0.843 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.525 15.019 1.625 19.001 hybrid contribution 0.067 -0.698 -1.002 1.223 sum -11.459 14.321 0.623 18.352 Atomic orbital electron populations 1.22252 0.93794 1.05002 1.04628 1.22549 0.91579 0.87603 0.71039 1.90487 1.71614 1.34609 1.36407 1.20428 0.94010 0.94904 1.07621 1.21345 0.99887 0.91155 0.97453 1.22284 0.93805 0.99888 0.98926 1.20519 0.94142 0.94627 0.99047 1.18315 0.85761 0.83472 0.79970 1.90735 1.19568 1.84796 1.47039 1.48168 1.21272 1.10042 1.51642 1.22290 0.85537 1.02235 0.97768 1.19016 0.92155 0.76175 0.96953 0.91749 1.22094 0.99247 1.03293 0.95867 1.21328 1.38598 1.04829 0.91764 0.92110 1.24891 0.95190 0.96475 0.97192 1.69886 1.39777 1.14058 1.28795 0.86426 0.78188 0.78628 0.84079 1.19793 1.20866 1.20897 1.21193 1.00956 0.90152 0.97857 1.20144 0.92496 0.95819 0.95069 1.21072 0.99467 0.93889 1.03159 0.88811 0.89824 0.88766 0.84741 0.82447 0.93041 0.90885 0.90176 0.96933 0.88668 0.95056 0.92671 0.84338 0.90643 0.89285 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.24 9.01 36.01 0.32 -0.92 16 2 C 0.39 4.06 7.17 -30.58 -0.22 3.84 16 3 O -0.45 -5.88 14.06 5.60 0.08 -5.80 16 4 C -0.17 -1.95 5.87 -105.00 -0.62 -2.57 16 5 C -0.08 -0.82 9.45 -39.17 -0.37 -1.19 16 6 C -0.13 -1.66 7.53 -39.26 -0.30 -1.95 16 7 C -0.08 -1.31 5.57 -104.87 -0.58 -1.89 16 8 C 0.54 11.30 7.52 -12.23 -0.09 11.21 16 9 O -0.54 -13.53 15.89 5.35 0.09 -13.44 16 10 N -0.58 -12.17 2.75 -176.29 -0.49 -12.66 16 11 C 0.06 1.03 7.72 59.85 0.46 1.49 16 12 C 0.26 6.45 2.63 -69.08 -0.18 6.27 16 13 H 0.06 1.89 6.91 -51.93 -0.36 1.53 16 14 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 15 C -0.53 -14.01 8.04 -34.44 -0.28 -14.29 16 16 H 0.06 1.60 7.24 -52.49 -0.38 1.22 16 17 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 19 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 C -0.08 -1.26 9.19 -39.26 -0.36 -1.63 16 24 C -0.03 -0.46 5.91 -104.21 -0.62 -1.08 16 25 C -0.12 -1.42 8.70 36.01 0.31 -1.11 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 28 H 0.09 0.43 7.90 -51.93 -0.41 0.02 16 29 H 0.13 0.87 6.97 -52.48 -0.37 0.50 16 30 H 0.16 1.78 4.19 -52.49 -0.22 1.56 16 31 H 0.05 0.69 7.22 -51.93 -0.37 0.32 16 32 H 0.07 0.97 4.91 -51.93 -0.26 0.72 16 33 H 0.08 1.36 6.96 -51.93 -0.36 1.00 16 34 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 36 H 0.03 0.66 7.67 -51.92 -0.40 0.26 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.14 2.17 7.80 -52.49 -0.41 1.76 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.08 5.88 -51.93 -0.31 0.78 16 41 H 0.06 0.68 8.03 -51.93 -0.42 0.26 16 LS Contribution 332.08 15.07 5.00 5.00 Total: -1.00 -32.10 332.08 -7.38 -39.48 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.40 Total: 1.03 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.27 Total: -5.23 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.14 Total: -36.81 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.16 Total: -19.24 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.10 -7.38 -39.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906566924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.359 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds