Wall clock time and date at job start Tue Mar 31 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21226 * 120.00159 * 2 1 4 4 C 1.47397 * 120.00081 * 179.97438 * 2 1 3 5 5 C 1.39819 * 120.02830 * 5.89040 * 4 2 1 6 6 C 1.37754 * 119.97617 * 179.78897 * 5 4 2 7 7 C 1.39586 * 120.02203 * 0.48892 * 6 5 4 8 8 C 1.48070 * 119.97177 * 179.76678 * 7 6 5 9 9 O 1.21519 * 120.00309 * 202.51618 * 8 7 6 10 10 N 1.34780 * 119.99818 * 22.51023 * 8 7 6 11 11 C 1.46498 * 119.99941 * 4.56537 * 10 8 7 12 12 C 1.46503 * 119.99927 * 184.55787 * 10 8 7 13 13 H 1.09003 * 109.46939 * 0.02562 * 12 10 8 14 14 C 1.53007 * 109.46894 * 120.00093 * 12 10 8 15 15 C 1.50699 * 109.47398 * 240.00008 * 12 10 8 16 16 H 1.07997 * 119.99516 * 0.02562 * 15 12 10 17 17 C 1.37868 * 120.00108 * 179.97438 * 15 12 10 18 18 N 1.31516 * 120.00077 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 120.00106 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46745 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47071 * 120.00082 * 19 17 15 22 22 H 1.48496 * 109.47009 * 240.00398 * 19 17 15 23 23 C 1.39548 * 120.06050 * 359.49351 * 7 6 5 24 24 C 1.37794 * 120.02575 * 0.26639 * 23 7 6 25 25 C 1.50701 * 120.01730 * 179.97438 * 24 23 7 26 26 H 1.08993 * 109.47168 * 239.99959 * 1 2 3 27 27 H 1.08996 * 109.47162 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.46785 * 119.99595 * 1 2 3 29 29 H 1.08004 * 120.01113 * 0.05060 * 5 4 2 30 30 H 1.07995 * 119.98862 * 180.25663 * 6 5 4 31 31 H 1.09006 * 109.46807 * 263.99115 * 11 10 8 32 32 H 1.08994 * 109.47159 * 23.98656 * 11 10 8 33 33 H 1.09002 * 109.47223 * 143.99535 * 11 10 8 34 34 H 1.08995 * 109.47044 * 300.00629 * 14 12 10 35 35 H 1.08996 * 109.46753 * 179.97438 * 14 12 10 36 36 H 1.09009 * 109.46601 * 60.00144 * 14 12 10 37 37 H 0.97004 * 120.00136 * 180.02562 * 18 17 15 38 38 H 1.07994 * 119.99042 * 180.25557 * 23 7 6 39 39 H 1.08998 * 109.46707 * 97.16975 * 25 24 23 40 40 H 1.09001 * 109.47638 * 217.16856 * 25 24 23 41 41 H 1.09004 * 109.46811 * 337.17247 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0498 0.0000 4 6 2.2440 -1.2765 0.0006 5 6 1.5511 -2.4846 -0.1231 6 6 2.2413 -3.6767 -0.1268 7 6 3.6311 -3.6794 0.0031 8 6 4.3714 -4.9617 0.0042 9 8 5.4748 -5.0260 0.5093 10 7 3.8215 -6.0578 -0.5551 11 6 2.5365 -5.9584 -1.2516 12 6 4.5088 -7.3486 -0.4665 13 1 5.4416 -7.2265 0.0841 14 6 3.6146 -8.3535 0.2625 15 6 4.8066 -7.8554 -1.8541 16 1 4.5136 -7.2739 -2.7158 17 6 5.4540 -9.0608 -2.0236 18 7 5.8113 -9.7686 -0.9743 19 14 5.8239 -9.6887 -3.7436 20 1 5.3232 -8.7130 -4.7449 21 1 7.2907 -9.8547 -3.9053 22 1 5.1521 -10.9972 -3.9479 23 6 4.3240 -2.4744 0.1263 24 6 3.6363 -1.2803 0.1253 25 6 4.3847 0.0208 0.2589 26 1 -0.3633 -0.5138 0.8899 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5138 -0.8901 29 1 0.4754 -2.4829 -0.2200 30 1 1.7066 -4.6097 -0.2265 31 1 1.7321 -6.2396 -0.5719 32 1 2.3849 -4.9334 -1.5897 33 1 2.5365 -6.6284 -2.1114 34 1 3.3991 -7.9869 1.2661 35 1 4.1258 -9.3140 0.3279 36 1 2.6816 -8.4756 -0.2879 37 1 6.2671 -10.6165 -1.0935 38 1 5.3996 -2.4776 0.2226 39 1 4.5456 0.4505 -0.7298 40 1 3.8027 0.7142 0.8661 41 1 5.3472 -0.1611 0.7370 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906566924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:19 Heat of formation + Delta-G solvation = -45.543790 kcal Electronic energy + Delta-G solvation = -22804.055815 eV Core-core repulsion = 19456.236406 eV Total energy + Delta-G solvation = -3347.819409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.70954 -40.65267 -38.83482 -37.29971 -35.15078 -33.82126 -33.18467 -31.19160 -30.35189 -28.34681 -27.47637 -27.31585 -25.76967 -23.01208 -22.64534 -21.03983 -20.34917 -18.56451 -17.92264 -17.78480 -17.40909 -16.84173 -16.32312 -16.12660 -15.94040 -15.49805 -15.14760 -14.96194 -14.54249 -14.42399 -14.31520 -13.91569 -13.72361 -13.55481 -13.26327 -13.12968 -13.00325 -12.96251 -12.79954 -12.70994 -12.68651 -12.56106 -12.22564 -12.12367 -11.76529 -11.20908 -10.88788 -10.55279 -10.44599 -10.09747 -9.74254 -9.39180 -8.16617 -6.33235 -0.65930 0.28545 1.15106 1.40072 1.42377 1.53282 1.94960 2.22031 2.44203 2.76116 3.07469 3.11923 3.54576 3.70434 3.79429 4.09689 4.19373 4.26228 4.38319 4.54970 4.60099 4.64634 4.71597 4.75635 4.77588 4.78366 4.88432 4.89723 5.00067 5.03142 5.10107 5.16617 5.21275 5.29898 5.45626 5.48603 5.56592 5.64617 5.76901 6.01240 6.13809 6.56308 6.71220 6.74192 7.22520 7.40825 8.88125 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028440 B = 0.003580 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.299923 B = 7818.649347 C = 8003.722361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.394 3.606 3 O -0.486 6.486 4 C -0.166 4.166 5 C -0.054 4.054 6 C -0.125 4.125 7 C -0.103 4.103 8 C 0.529 3.471 9 O -0.602 6.602 10 N -0.587 5.587 11 C 0.058 3.942 12 C 0.260 3.740 13 H 0.007 0.993 14 C -0.131 4.131 15 C -0.539 4.539 16 H 0.061 0.939 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.965 3.035 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.272 1.272 23 C -0.099 4.099 24 C -0.046 4.046 25 C -0.116 4.116 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.190 0.810 30 H 0.178 0.822 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.022 0.978 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.265 0.735 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.652 15.798 0.048 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.275 3.725 3 O -0.365 6.365 4 C -0.168 4.168 5 C -0.072 4.072 6 C -0.142 4.142 7 C -0.106 4.106 8 C 0.318 3.682 9 O -0.485 6.485 10 N -0.316 5.316 11 C -0.083 4.083 12 C 0.158 3.842 13 H 0.025 0.975 14 C -0.190 4.190 15 C -0.577 4.577 16 H 0.079 0.921 17 C -0.184 4.184 18 N -0.556 5.556 19 Si 0.791 3.209 20 H -0.189 1.189 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.118 4.118 24 C -0.047 4.047 25 C -0.172 4.172 26 H 0.136 0.864 27 H 0.104 0.896 28 H 0.139 0.861 29 H 0.207 0.793 30 H 0.195 0.805 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.134 0.866 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.715 16.093 0.333 22.496 hybrid contribution 1.332 -0.929 -0.566 1.720 sum -14.383 15.165 -0.233 20.902 Atomic orbital electron populations 1.22306 0.89667 1.06134 1.06906 1.23106 0.93557 0.86217 0.69640 1.90493 1.72721 1.35429 1.37844 1.20867 0.93293 0.96751 1.05848 1.21839 1.02181 0.89046 0.94111 1.22471 0.91821 1.01892 0.98047 1.20177 0.95735 0.91939 1.02781 1.19114 0.85365 0.84964 0.78757 1.90687 1.22394 1.85893 1.49546 1.48141 1.22779 1.08618 1.52025 1.22652 0.83754 1.04073 0.97779 1.18618 0.91026 0.78668 0.95887 0.97528 1.21866 0.99302 1.01284 0.96531 1.21582 1.38824 1.04999 0.92333 0.92060 1.25730 0.94955 0.96755 1.00971 1.70028 1.40309 1.14393 1.30855 0.85397 0.77556 0.78455 0.79539 1.18913 1.21345 1.19705 1.21070 1.00227 0.91063 0.99453 1.20286 0.93860 0.95107 0.95424 1.21037 0.99511 0.93413 1.03209 0.86428 0.89572 0.86059 0.79312 0.80525 0.89615 0.87888 0.91204 0.95902 0.91337 0.92847 0.92587 0.86594 0.90550 0.89316 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.32 9.01 71.24 0.64 -0.68 16 2 C 0.39 6.68 7.17 28.10 0.20 6.88 16 3 O -0.49 -11.57 14.06 -2.86 -0.04 -11.61 16 4 C -0.17 -3.31 5.87 -20.11 -0.12 -3.42 16 5 C -0.05 -0.82 9.45 22.54 0.21 -0.61 16 6 C -0.12 -2.71 7.53 22.48 0.17 -2.54 16 7 C -0.10 -3.35 5.57 -20.03 -0.11 -3.46 16 8 C 0.53 23.14 7.52 86.85 0.65 23.80 16 9 O -0.60 -32.53 15.89 -3.77 -0.06 -32.59 16 10 N -0.59 -24.87 2.75 -829.94 -2.28 -27.15 16 11 C 0.06 1.71 7.72 127.77 0.99 2.70 16 12 C 0.26 13.54 2.63 44.25 0.12 13.66 16 13 H 0.01 0.42 6.91 -2.39 -0.02 0.41 16 14 C -0.13 -6.19 8.97 71.98 0.65 -5.54 16 15 C -0.54 -29.26 8.04 25.60 0.21 -29.05 16 16 H 0.06 3.24 7.24 -2.91 -0.02 3.22 16 17 C 0.02 0.85 5.30 84.65 0.45 1.30 16 18 N -0.92 -52.74 11.32 21.44 0.24 -52.50 16 19 Si 0.97 42.88 29.54 68.60 2.03 44.91 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 C -0.10 -3.13 9.19 22.48 0.21 -2.93 16 24 C -0.05 -1.20 5.91 -19.59 -0.12 -1.32 16 25 C -0.12 -2.76 8.70 71.24 0.62 -2.14 16 26 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.09 0.63 8.12 -2.39 -0.02 0.61 16 28 H 0.12 0.25 7.90 -2.38 -0.02 0.23 16 29 H 0.19 0.87 6.97 -2.91 -0.02 0.85 16 30 H 0.18 3.14 4.19 -2.91 -0.01 3.12 16 31 H 0.09 1.94 7.22 -2.38 -0.02 1.92 16 32 H 0.10 2.39 4.91 -2.39 -0.01 2.38 16 33 H 0.07 2.22 6.96 -2.39 -0.02 2.20 16 34 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 36 H 0.05 2.22 7.67 -2.38 -0.02 2.20 16 37 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.12 4.05 7.80 -2.91 -0.02 4.03 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.09 2.13 5.88 -2.39 -0.01 2.12 16 41 H 0.06 1.45 8.03 -2.39 -0.02 1.43 16 Total: -1.00 -76.63 332.08 5.70 -70.94 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.05 Total: 11.36 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 4.76 Total: -3.36 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -2.04 Total: -79.65 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -0.10 Total: -44.20 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -76.63 5.70 -70.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906566924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.394 kcal (2) G-P(sol) polarization free energy of solvation -76.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds