Wall clock time and date at job start Tue Mar 31 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21222 * 120.00328 * 2 1 4 4 C 1.47392 * 119.99865 * 180.02562 * 2 1 3 5 5 C 1.39826 * 120.03083 * 353.96991 * 4 2 1 6 6 C 1.37749 * 119.97544 * 179.97438 * 5 4 2 7 7 C 1.39591 * 120.02844 * 0.02562 * 6 5 4 8 8 C 1.48070 * 119.97184 * 180.02562 * 7 6 5 9 9 O 1.21518 * 119.99829 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99913 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99899 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47117 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47076 * 180.02562 * 12 11 10 14 14 C 1.50708 * 109.47053 * 180.02562 * 13 12 11 15 15 H 1.07993 * 119.99908 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99644 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99781 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00267 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46984 * 90.00059 * 18 16 14 20 20 H 1.48498 * 109.46736 * 209.99896 * 18 16 14 21 21 H 1.48502 * 109.47000 * 330.00039 * 18 16 14 22 22 C 1.39546 * 120.05440 * 359.97438 * 7 6 5 23 23 C 1.37800 * 120.02912 * 359.74655 * 22 7 6 24 24 C 1.50699 * 120.01217 * 180.27748 * 23 22 7 25 25 H 1.08996 * 109.47227 * 239.99915 * 1 2 3 26 26 H 1.09007 * 109.46935 * 119.99488 * 1 2 3 27 27 H 1.09000 * 109.47095 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.01406 * 0.02562 * 5 4 2 29 29 H 1.08002 * 119.98560 * 180.02562 * 6 5 4 30 30 H 0.97001 * 120.00083 * 0.02562 * 10 8 7 31 31 H 1.08998 * 109.47029 * 300.00467 * 11 10 8 32 32 H 1.09004 * 109.46902 * 60.00461 * 11 10 8 33 33 H 1.09002 * 109.47084 * 300.00094 * 12 11 10 34 34 H 1.09000 * 109.47269 * 60.00180 * 12 11 10 35 35 H 1.09002 * 109.47010 * 299.99857 * 13 12 11 36 36 H 1.09000 * 109.47155 * 59.99827 * 13 12 11 37 37 H 0.96991 * 119.99972 * 179.97438 * 17 16 14 38 38 H 1.08000 * 119.98486 * 180.02562 * 22 7 6 39 39 H 1.08995 * 109.46938 * 263.54896 * 24 23 22 40 40 H 1.09001 * 109.47483 * 23.54930 * 24 23 22 41 41 H 1.09006 * 109.46883 * 143.55000 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0498 0.0000 4 6 2.2439 -1.2765 -0.0006 5 6 1.5512 -2.4845 0.1261 6 6 2.2410 -3.6768 0.1249 7 6 3.6311 -3.6795 -0.0022 8 6 4.3713 -4.9619 -0.0039 9 8 5.5814 -4.9648 -0.1149 10 7 3.7029 -6.1259 0.1177 11 6 4.4352 -7.3947 0.1154 12 6 3.4479 -8.5537 0.2668 13 6 4.2127 -9.8787 0.2651 14 6 3.2401 -11.0203 0.4136 15 1 2.1824 -10.8207 0.5009 16 6 3.7008 -12.3196 0.4380 17 7 2.8520 -13.3159 0.5681 18 14 5.5303 -12.6650 0.2862 19 1 6.1441 -12.6847 1.6383 20 1 5.7326 -13.9824 -0.3685 21 1 6.1684 -11.6025 -0.5318 22 6 4.3237 -2.4746 -0.1286 23 6 3.6354 -1.2808 -0.1335 24 6 4.3831 0.0198 -0.2763 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3633 -0.5138 -0.8901 27 1 -0.3633 1.0277 0.0005 28 1 0.4756 -2.4828 0.2239 29 1 1.7061 -4.6100 0.2222 30 1 2.7369 -6.1235 0.2059 31 1 4.9777 -7.4994 -0.8241 32 1 5.1410 -7.4084 0.9460 33 1 2.9057 -8.4487 1.2066 34 1 2.7417 -8.5402 -0.5634 35 1 4.7551 -9.9839 -0.6745 36 1 4.9186 -9.8919 1.0956 37 1 3.1760 -14.2299 0.5848 38 1 5.3992 -2.4780 -0.2273 39 1 4.5570 0.4492 0.7103 40 1 5.3393 -0.1627 -0.7668 41 1 3.7939 0.7137 -0.8759 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906570180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:10 Heat of formation + Delta-G solvation = -64.819173 kcal Electronic energy + Delta-G solvation = -21426.751594 eV Core-core repulsion = 18078.096342 eV Total energy + Delta-G solvation = -3348.655252 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84069 -39.73641 -38.09253 -35.66495 -33.68597 -33.07140 -32.52958 -31.36382 -29.90705 -27.64761 -27.08090 -24.90750 -22.72699 -22.25289 -21.07366 -20.49554 -19.69778 -17.82238 -17.00060 -16.80146 -16.43286 -15.66048 -15.53397 -15.45355 -14.91368 -14.47492 -14.31456 -14.20671 -13.93787 -13.68153 -13.58068 -12.95430 -12.76662 -12.68810 -12.59732 -12.37765 -12.28882 -12.03461 -11.96194 -11.49354 -11.13440 -10.93536 -10.35432 -10.06507 -9.94340 -9.83057 -9.66752 -9.42896 -9.26947 -9.18643 -8.95542 -8.58770 -6.09608 -4.08624 -0.01984 0.92471 1.75693 2.76493 3.11243 3.28918 3.36752 3.40589 3.52691 3.58243 4.27270 4.36188 4.41444 4.46436 4.63540 4.79120 4.85516 4.92948 5.03296 5.13017 5.24431 5.30281 5.44025 5.45076 5.50903 5.55221 5.58166 5.75204 5.82981 5.91814 5.94067 6.12097 6.23360 6.37580 6.38232 6.60441 6.72265 7.08433 7.17732 7.31282 7.47632 7.72354 8.13964 8.46447 8.93861 9.52538 11.03563 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035278 B = 0.002459 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.500205 B =11382.886966 C =12138.546428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.392 3.608 3 O -0.450 6.450 4 C -0.160 4.160 5 C -0.075 4.075 6 C -0.109 4.109 7 C -0.091 4.091 8 C 0.548 3.452 9 O -0.535 6.535 10 N -0.717 5.717 11 C 0.113 3.887 12 C -0.114 4.114 13 C -0.011 4.011 14 C -0.523 4.523 15 H 0.072 0.928 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.264 1.264 22 C -0.078 4.078 23 C -0.032 4.032 24 C -0.122 4.122 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.400 0.600 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.019 0.981 36 H 0.015 0.985 37 H 0.264 0.736 38 H 0.143 0.857 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 26.821 -1.356 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.271 3.729 3 O -0.326 6.326 4 C -0.161 4.161 5 C -0.093 4.093 6 C -0.127 4.127 7 C -0.095 4.095 8 C 0.334 3.666 9 O -0.413 6.413 10 N -0.368 5.368 11 C -0.010 4.010 12 C -0.152 4.152 13 C -0.049 4.049 14 C -0.561 4.561 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.541 5.541 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.097 4.097 23 C -0.033 4.033 24 C -0.178 4.178 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.104 0.896 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.235 0.765 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.160 0.840 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.454 27.132 -1.427 27.388 hybrid contribution 0.313 -0.685 0.040 0.755 sum -3.141 26.447 -1.387 26.669 Atomic orbital electron populations 1.22265 0.93468 1.05302 1.04733 1.22559 0.91721 0.87468 0.71171 1.90502 1.71586 1.34523 1.35968 1.20517 0.94044 0.95106 1.06435 1.21343 1.00281 0.90962 0.96684 1.21314 0.93051 0.98822 0.99540 1.20300 0.93922 0.94013 1.01224 1.18319 0.87256 0.83774 0.77256 1.90774 1.13668 1.87452 1.49446 1.46111 1.11143 1.06296 1.73269 1.21731 0.95659 0.81352 1.02220 1.21718 0.97711 0.94035 1.01705 1.19506 0.96371 0.92266 0.96779 1.21082 0.94850 0.89593 1.50544 0.90998 1.25032 0.97757 0.96250 0.94443 1.69910 1.34440 0.99231 1.50550 0.86775 0.85980 0.77768 0.78776 1.20230 1.21346 1.18893 1.21212 1.01107 0.90056 0.97301 1.20205 0.92512 0.95975 0.94581 1.21108 0.99581 0.93772 1.03383 0.88657 0.88674 0.89599 0.84300 0.84669 0.76498 0.91460 0.91471 0.92030 0.92002 0.96261 0.96694 0.92665 0.83958 0.90376 0.91742 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.84 9.01 36.00 0.32 -0.52 16 2 C 0.39 3.08 7.16 -30.58 -0.22 2.86 16 3 O -0.45 -4.77 14.06 5.61 0.08 -4.69 16 4 C -0.16 -1.36 5.87 -105.00 -0.62 -1.97 16 5 C -0.07 -0.52 9.45 -39.17 -0.37 -0.89 16 6 C -0.11 -0.90 9.52 -39.26 -0.37 -1.28 16 7 C -0.09 -1.02 5.88 -104.87 -0.62 -1.64 16 8 C 0.55 7.76 7.78 -12.23 -0.10 7.67 16 9 O -0.54 -9.55 16.33 5.35 0.09 -9.47 16 10 N -0.72 -9.40 5.51 -61.18 -0.34 -9.74 16 11 C 0.11 1.79 5.67 -4.04 -0.02 1.77 16 12 C -0.11 -2.03 5.27 -26.73 -0.14 -2.17 16 13 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 14 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 18 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 22 C -0.08 -0.86 9.20 -39.25 -0.36 -1.22 16 23 C -0.03 -0.32 5.91 -104.21 -0.62 -0.93 16 24 C -0.12 -1.09 8.71 36.01 0.31 -0.78 16 25 H 0.09 0.25 7.90 -51.93 -0.41 -0.16 16 26 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.36 8.12 -51.93 -0.42 -0.06 16 28 H 0.14 0.51 6.97 -52.49 -0.37 0.14 16 29 H 0.14 0.83 6.38 -52.49 -0.34 0.50 16 30 H 0.40 4.06 6.49 -40.82 -0.27 3.79 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 36 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.14 1.59 7.63 -52.49 -0.40 1.19 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 41 H 0.09 0.87 5.86 -51.93 -0.30 0.56 16 LS Contribution 344.02 15.07 5.18 5.18 Total: -1.00 -33.91 344.02 -8.03 -41.94 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.81 Total: -0.96 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -3.34 Total: -12.44 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.44 Total: -36.38 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.17 Total: -14.15 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.91 -8.03 -41.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906570180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.877 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds