Wall clock time and date at job start Tue Mar 31 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21222 * 120.00328 * 2 1 4 4 C 1.47392 * 119.99865 * 180.02562 * 2 1 3 5 5 C 1.39826 * 120.03083 * 353.96991 * 4 2 1 6 6 C 1.37749 * 119.97544 * 179.97438 * 5 4 2 7 7 C 1.39591 * 120.02844 * 0.02562 * 6 5 4 8 8 C 1.48070 * 119.97184 * 180.02562 * 7 6 5 9 9 O 1.21518 * 119.99829 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99913 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99899 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47117 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47076 * 180.02562 * 12 11 10 14 14 C 1.50708 * 109.47053 * 180.02562 * 13 12 11 15 15 H 1.07993 * 119.99908 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99644 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99781 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00267 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46984 * 90.00059 * 18 16 14 20 20 H 1.48498 * 109.46736 * 209.99896 * 18 16 14 21 21 H 1.48502 * 109.47000 * 330.00039 * 18 16 14 22 22 C 1.39546 * 120.05440 * 359.97438 * 7 6 5 23 23 C 1.37800 * 120.02912 * 359.74655 * 22 7 6 24 24 C 1.50699 * 120.01217 * 180.27748 * 23 22 7 25 25 H 1.08996 * 109.47227 * 239.99915 * 1 2 3 26 26 H 1.09007 * 109.46935 * 119.99488 * 1 2 3 27 27 H 1.09000 * 109.47095 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.01406 * 0.02562 * 5 4 2 29 29 H 1.08002 * 119.98560 * 180.02562 * 6 5 4 30 30 H 0.97001 * 120.00083 * 0.02562 * 10 8 7 31 31 H 1.08998 * 109.47029 * 300.00467 * 11 10 8 32 32 H 1.09004 * 109.46902 * 60.00461 * 11 10 8 33 33 H 1.09002 * 109.47084 * 300.00094 * 12 11 10 34 34 H 1.09000 * 109.47269 * 60.00180 * 12 11 10 35 35 H 1.09002 * 109.47010 * 299.99857 * 13 12 11 36 36 H 1.09000 * 109.47155 * 59.99827 * 13 12 11 37 37 H 0.96991 * 119.99972 * 179.97438 * 17 16 14 38 38 H 1.08000 * 119.98486 * 180.02562 * 22 7 6 39 39 H 1.08995 * 109.46938 * 263.54896 * 24 23 22 40 40 H 1.09001 * 109.47483 * 23.54930 * 24 23 22 41 41 H 1.09006 * 109.46883 * 143.55000 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0498 0.0000 4 6 2.2439 -1.2765 -0.0006 5 6 1.5512 -2.4845 0.1261 6 6 2.2410 -3.6768 0.1249 7 6 3.6311 -3.6795 -0.0022 8 6 4.3713 -4.9619 -0.0039 9 8 5.5814 -4.9648 -0.1149 10 7 3.7029 -6.1259 0.1177 11 6 4.4352 -7.3947 0.1154 12 6 3.4479 -8.5537 0.2668 13 6 4.2127 -9.8787 0.2651 14 6 3.2401 -11.0203 0.4136 15 1 2.1824 -10.8207 0.5009 16 6 3.7008 -12.3196 0.4380 17 7 2.8520 -13.3159 0.5681 18 14 5.5303 -12.6650 0.2862 19 1 6.1441 -12.6847 1.6383 20 1 5.7326 -13.9824 -0.3685 21 1 6.1684 -11.6025 -0.5318 22 6 4.3237 -2.4746 -0.1286 23 6 3.6354 -1.2808 -0.1335 24 6 4.3831 0.0198 -0.2763 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3633 -0.5138 -0.8901 27 1 -0.3633 1.0277 0.0005 28 1 0.4756 -2.4828 0.2239 29 1 1.7061 -4.6100 0.2222 30 1 2.7369 -6.1235 0.2059 31 1 4.9777 -7.4994 -0.8241 32 1 5.1410 -7.4084 0.9460 33 1 2.9057 -8.4487 1.2066 34 1 2.7417 -8.5402 -0.5634 35 1 4.7551 -9.9839 -0.6745 36 1 4.9186 -9.8919 1.0956 37 1 3.1760 -14.2299 0.5848 38 1 5.3992 -2.4780 -0.2273 39 1 4.5570 0.4492 0.7103 40 1 5.3393 -0.1627 -0.7668 41 1 3.7939 0.7137 -0.8759 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906570180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:10 Heat of formation + Delta-G solvation = -86.405972 kcal Electronic energy + Delta-G solvation = -21427.687668 eV Core-core repulsion = 18078.096342 eV Total energy + Delta-G solvation = -3349.591326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61786 -40.66212 -38.89120 -37.05870 -35.25803 -34.08205 -33.44548 -32.85044 -30.43532 -29.14213 -27.87756 -25.99060 -24.18713 -22.99057 -22.25314 -21.69816 -20.61885 -19.07869 -18.52366 -17.66422 -17.42330 -16.78805 -16.52307 -16.20884 -16.17919 -15.58606 -15.50261 -15.12747 -15.06205 -14.76914 -14.40351 -14.21825 -13.82119 -13.71258 -13.69285 -13.27948 -13.01479 -12.99105 -12.81864 -12.74280 -12.69993 -12.14457 -11.95331 -11.79110 -11.59522 -11.32779 -11.14079 -10.75443 -10.52860 -10.32050 -10.02119 -9.85764 -8.28718 -6.32234 -0.75333 0.25190 1.05686 1.37207 1.39151 1.50390 1.88623 2.03986 2.36707 2.73934 3.02699 3.07253 3.58153 3.65010 3.75070 4.06362 4.09042 4.15491 4.19856 4.25238 4.48932 4.50185 4.57307 4.69404 4.73317 4.74695 4.85904 4.87985 4.88266 5.04401 5.06751 5.14137 5.16812 5.24016 5.31329 5.45520 5.48765 5.56374 5.65742 5.70742 6.28133 6.45263 6.52150 6.76040 7.08767 7.32643 8.87518 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035278 B = 0.002459 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.500205 B =11382.886966 C =12138.546428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.391 3.609 3 O -0.485 6.485 4 C -0.163 4.163 5 C -0.058 4.058 6 C -0.102 4.102 7 C -0.109 4.109 8 C 0.548 3.452 9 O -0.581 6.581 10 N -0.706 5.706 11 C 0.125 3.875 12 C -0.100 4.100 13 C -0.014 4.014 14 C -0.528 4.528 15 H 0.040 0.960 16 C 0.005 3.995 17 N -0.950 5.950 18 Si 0.945 3.055 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.248 1.248 22 C -0.092 4.092 23 C -0.048 4.048 24 C -0.118 4.118 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.084 0.916 28 H 0.183 0.817 29 H 0.162 0.838 30 H 0.416 0.584 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.020 0.980 36 H 0.019 0.981 37 H 0.266 0.734 38 H 0.128 0.872 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 27.921 -1.352 28.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.272 3.728 3 O -0.363 6.363 4 C -0.164 4.164 5 C -0.076 4.076 6 C -0.121 4.121 7 C -0.112 4.112 8 C 0.336 3.664 9 O -0.462 6.462 10 N -0.358 5.358 11 C 0.001 3.999 12 C -0.138 4.138 13 C -0.052 4.052 14 C -0.566 4.566 15 H 0.058 0.942 16 C -0.192 4.192 17 N -0.591 5.591 18 Si 0.769 3.231 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.172 1.172 22 C -0.111 4.111 23 C -0.048 4.048 24 C -0.175 4.175 25 H 0.138 0.862 26 H 0.135 0.865 27 H 0.103 0.897 28 H 0.201 0.799 29 H 0.179 0.821 30 H 0.254 0.746 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.146 0.854 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.711 28.249 -1.420 28.675 hybrid contribution 0.568 -0.978 0.048 1.132 sum -4.143 27.271 -1.372 27.618 Atomic orbital electron populations 1.22313 0.90007 1.06081 1.06808 1.23110 0.93471 0.86464 0.69730 1.90503 1.72642 1.35506 1.37678 1.20850 0.93574 0.96517 1.05492 1.21776 1.02216 0.89384 0.94210 1.21622 0.91658 1.00633 0.98138 1.20126 0.95196 0.92206 1.03678 1.18762 0.86863 0.84737 0.76043 1.90748 1.15732 1.88113 1.51586 1.45883 1.11887 1.05158 1.72840 1.21386 0.95041 0.81860 1.01609 1.21488 0.97579 0.92319 1.02410 1.19480 0.95837 0.93040 0.96809 1.21460 0.94465 0.91300 1.49420 0.94151 1.25966 1.02706 0.96185 0.94374 1.70053 1.36809 0.99789 1.52410 0.85729 0.80100 0.77954 0.79312 1.19342 1.21143 1.17161 1.21145 1.00671 0.90763 0.98491 1.20321 0.93603 0.95546 0.95320 1.21053 0.99720 0.93509 1.03170 0.86237 0.86468 0.89703 0.79946 0.82092 0.74561 0.92198 0.92158 0.91355 0.91347 0.96133 0.96251 0.92547 0.85445 0.90642 0.91331 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.87 9.01 71.24 0.64 -0.23 16 2 C 0.39 5.27 7.16 28.10 0.20 5.48 16 3 O -0.48 -9.92 14.06 -2.85 -0.04 -9.96 16 4 C -0.16 -2.40 5.87 -20.11 -0.12 -2.52 16 5 C -0.06 -0.57 9.45 22.54 0.21 -0.36 16 6 C -0.10 -1.36 9.52 22.48 0.21 -1.15 16 7 C -0.11 -2.32 5.88 -20.03 -0.12 -2.44 16 8 C 0.55 15.16 7.78 86.85 0.68 15.83 16 9 O -0.58 -21.04 16.33 -3.77 -0.06 -21.10 16 10 N -0.71 -17.25 5.51 -465.76 -2.56 -19.81 16 11 C 0.12 3.78 5.67 86.38 0.49 4.27 16 12 C -0.10 -3.40 5.27 30.59 0.16 -3.24 16 13 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 14 C -0.53 -29.27 9.66 25.60 0.25 -29.03 16 15 H 0.04 2.42 7.99 -2.91 -0.02 2.39 16 16 C 0.00 0.26 5.47 84.65 0.46 0.73 16 17 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 18 Si 0.95 43.83 27.47 68.60 1.88 45.72 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 21 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 22 C -0.09 -2.03 9.20 22.48 0.21 -1.82 16 23 C -0.05 -0.92 5.91 -19.59 -0.12 -1.03 16 24 C -0.12 -2.17 8.71 71.24 0.62 -1.55 16 25 H 0.12 0.00 7.90 -2.39 -0.02 -0.01 16 26 H 0.12 0.06 8.14 -2.38 -0.02 0.04 16 27 H 0.08 0.46 8.12 -2.39 -0.02 0.44 16 28 H 0.18 0.19 6.97 -2.91 -0.02 0.17 16 29 H 0.16 1.26 6.38 -2.91 -0.02 1.24 16 30 H 0.42 7.25 6.49 -92.71 -0.60 6.64 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 36 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 37 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.13 3.08 7.63 -2.91 -0.02 3.06 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.13 8.04 -2.39 -0.02 1.11 16 41 H 0.09 1.67 5.86 -2.38 -0.01 1.65 16 Total: -1.00 -75.92 344.02 3.81 -72.11 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.38 Total: 8.84 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 3.90 Total: -17.55 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -2.27 Total: -78.06 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.10 Total: -31.06 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.72 kcal Total: -75.92 3.81 -72.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906570180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.296 kcal (2) G-P(sol) polarization free energy of solvation -75.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds