Wall clock time and date at job start Tue Mar 31 2020 06:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37649 * 120.03047 * 2 1 4 4 C 1.50701 * 120.09756 * 0.03786 * 3 2 1 5 5 C 1.39850 * 119.79921 * 180.29336 * 3 2 1 6 6 C 1.47382 * 120.07533 * 179.71916 * 5 3 2 7 7 O 1.21523 * 119.99686 * 353.17212 * 6 5 3 8 8 O 1.34756 * 120.00509 * 173.44265 * 6 5 3 9 9 C 1.45192 * 117.00409 * 184.86137 * 8 6 5 10 10 C 1.53006 * 109.47420 * 175.22956 * 9 8 6 11 11 C 1.50700 * 115.54400 * 305.63345 * 10 9 8 12 12 H 1.08005 * 119.99673 * 144.26475 * 11 10 9 13 13 C 1.37873 * 120.00111 * 324.25568 * 11 10 9 14 14 N 1.31509 * 120.00492 * 3.20998 * 13 11 10 15 15 Si 1.86808 * 119.99806 * 183.20793 * 13 11 10 16 16 H 1.48494 * 109.47117 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47006 * 120.00134 * 15 13 11 18 18 H 1.48500 * 109.46901 * 240.00261 * 15 13 11 19 19 C 1.52998 * 117.50042 * 159.96549 * 10 9 8 20 20 C 1.52996 * 117.50223 * 91.30283 * 10 9 8 21 21 C 1.39863 * 119.85431 * 359.44853 * 5 3 2 22 22 C 1.36577 * 120.04709 * 0.27193 * 21 5 3 23 23 C 1.39237 * 120.20501 * 359.97438 * 22 21 5 24 24 N 1.39007 * 119.92558 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.46824 * 270.28561 * 1 2 3 26 26 H 1.08999 * 109.46881 * 30.28298 * 1 2 3 27 27 H 1.08993 * 109.47235 * 150.28078 * 1 2 3 28 28 H 1.08998 * 109.46701 * 262.97681 * 4 3 2 29 29 H 1.08997 * 109.47107 * 22.98062 * 4 3 2 30 30 H 1.09003 * 109.46701 * 142.97884 * 4 3 2 31 31 H 1.09008 * 109.47299 * 295.22898 * 9 8 6 32 32 H 1.08996 * 109.47251 * 55.22389 * 9 8 6 33 33 H 0.96999 * 120.00643 * 184.99903 * 14 13 11 34 34 H 1.09001 * 117.49912 * 359.97438 * 19 10 9 35 35 H 1.08999 * 117.50102 * 145.02135 * 19 10 9 36 36 H 1.08998 * 117.50159 * 214.98215 * 20 10 9 37 37 H 1.09004 * 117.49679 * 359.97438 * 20 10 9 38 38 H 1.08000 * 119.97013 * 180.25729 * 21 5 3 39 39 H 1.07999 * 119.89400 * 179.97438 * 22 21 5 40 40 H 0.97001 * 120.00456 * 359.97438 * 24 23 22 41 41 H 0.97005 * 119.99998 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1917 0.0000 4 6 1.4453 2.4985 0.0009 5 6 3.5943 1.1861 -0.0062 6 6 4.3380 2.4585 -0.0125 7 8 3.7419 3.5100 -0.1374 8 8 5.6796 2.4556 0.1148 9 6 6.3356 3.7474 0.2094 10 6 7.8300 3.5429 0.4667 11 6 8.1730 2.6856 1.6577 12 1 9.0291 2.0283 1.6212 13 6 7.3939 2.7406 2.7939 14 7 6.3157 3.4932 2.8162 15 14 7.8700 1.7459 4.3017 16 1 9.1159 0.9880 4.0216 17 1 8.0958 2.6623 5.4482 18 1 6.7770 0.7971 4.6341 19 6 8.7688 4.7059 0.1395 20 6 8.7520 3.4613 -0.7515 21 6 4.2857 -0.0297 -0.0007 22 6 3.5961 -1.2086 0.0051 23 6 2.2037 -1.2056 0.0061 24 7 1.5076 -2.4088 0.0125 25 1 -0.3633 0.0051 1.0276 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3633 -0.8924 -0.5094 28 1 1.3727 2.8764 -1.0189 29 1 0.4442 2.3422 0.4026 30 1 1.9762 3.2220 0.6196 31 1 6.1991 4.2935 -0.7241 32 1 5.9001 4.3168 1.0304 33 1 5.8080 3.5891 3.6372 34 1 8.3219 5.6165 -0.2596 35 1 9.6348 4.8506 0.7853 36 1 9.6069 2.7878 -0.6915 37 1 8.2939 3.5528 -1.7364 38 1 5.3657 -0.0362 -0.0013 39 1 4.1324 -2.1459 0.0089 40 1 1.9919 -3.2493 0.0160 41 1 0.5376 -2.4080 0.0129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922978801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:29 Heat of formation + Delta-G solvation = -36.690909 kcal Electronic energy + Delta-G solvation = -23248.054849 eV Core-core repulsion = 19900.619329 eV Total energy + Delta-G solvation = -3347.435519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.05038 -38.68568 -36.65619 -35.05037 -34.49576 -33.24671 -32.12172 -29.81427 -27.85173 -26.21036 -26.11667 -25.24807 -22.59064 -21.20801 -20.86400 -19.76261 -19.08217 -17.35036 -16.72321 -16.50714 -16.24177 -15.41563 -15.19574 -14.60537 -14.35384 -14.08200 -13.85897 -13.46876 -13.05208 -12.85745 -12.75365 -12.54533 -12.20878 -11.98106 -11.82950 -11.75776 -11.46200 -11.32576 -11.01801 -10.71811 -10.60097 -10.45245 -10.33031 -10.25926 -9.74444 -9.25150 -9.09118 -8.90003 -8.70395 -8.41772 -8.17810 -7.43870 -5.94438 -4.06728 1.35265 1.64800 3.29026 3.33854 3.37936 3.40983 3.76371 3.84539 4.26799 4.40139 4.94018 4.95831 5.03979 5.24496 5.39863 5.50000 5.57194 5.59198 5.66972 5.83211 5.86650 6.05675 6.11524 6.16247 6.24441 6.29973 6.41368 6.49699 6.58047 6.65887 6.69109 6.74755 6.85647 6.96116 6.97054 7.09443 7.28790 7.44287 7.54987 7.63113 7.80130 7.97492 8.38509 8.86549 8.98153 9.55465 11.01506 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016816 B = 0.005161 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.646015 B = 5424.473982 C = 6039.626294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.191 4.191 3 C 0.026 3.974 4 C -0.123 4.123 5 C -0.172 4.172 6 C 0.508 3.492 7 O -0.530 6.530 8 O -0.320 6.320 9 C 0.121 3.879 10 C 0.046 3.954 11 C -0.478 4.478 12 H 0.061 0.939 13 C 0.074 3.926 14 N -0.881 5.881 15 Si 0.895 3.105 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.196 4.196 20 C -0.209 4.209 21 C -0.010 4.010 22 C -0.217 4.217 23 C 0.244 3.756 24 N -0.872 5.872 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.019 0.981 32 H 0.117 0.883 33 H 0.261 0.739 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.141 0.859 39 H 0.123 0.877 40 H 0.398 0.602 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.754 -9.163 -5.394 15.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.196 4.196 3 C 0.024 3.976 4 C -0.179 4.179 5 C -0.175 4.175 6 C 0.355 3.645 7 O -0.424 6.424 8 O -0.234 6.234 9 C 0.048 3.952 10 C 0.045 3.955 11 C -0.515 4.515 12 H 0.080 0.920 13 C -0.129 4.129 14 N -0.519 5.519 15 Si 0.723 3.277 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.234 4.234 20 C -0.247 4.247 21 C -0.029 4.029 22 C -0.239 4.239 23 C 0.137 3.863 24 N -0.411 5.411 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.037 0.963 32 H 0.135 0.865 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.159 0.841 39 H 0.141 0.859 40 H 0.226 0.774 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -11.041 -8.815 -5.322 15.097 hybrid contribution 0.222 -0.744 0.817 1.127 sum -10.819 -9.558 -4.506 15.123 Atomic orbital electron populations 1.20556 0.91299 1.02106 1.01717 1.18997 0.95591 0.90866 1.14111 1.19595 0.91694 0.94971 0.91296 1.21136 0.98710 0.94501 1.03547 1.18918 0.92341 0.91822 1.14468 1.20816 0.82222 0.88555 0.72942 1.90672 1.69712 1.34034 1.47942 1.86474 1.18606 1.37119 1.81210 1.22824 0.92013 0.81089 0.99318 1.18953 0.86991 0.96393 0.93117 1.20487 1.11469 1.22785 0.96734 0.92041 1.24935 0.93916 0.95182 0.98836 1.69787 1.15894 1.39429 1.26821 0.86485 0.78486 0.80063 0.82697 1.19724 1.20988 1.20899 1.22978 1.04287 0.91990 1.04163 1.22943 1.04626 1.01844 0.95258 1.21034 1.00896 0.90605 0.90319 1.20249 0.91636 0.98826 1.13237 1.17743 0.91296 0.85965 0.91248 1.42462 1.09100 1.05271 1.84238 0.91876 0.91113 0.92644 0.90760 0.92502 0.88396 0.96324 0.86530 0.92868 0.91470 0.89874 0.90411 0.91309 0.84150 0.85875 0.77417 0.77363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 8.74 36.00 0.31 -0.71 16 2 C -0.19 -2.66 5.89 -104.46 -0.62 -3.27 16 3 C 0.03 0.43 5.91 -104.23 -0.62 -0.19 16 4 C -0.12 -1.95 8.06 36.01 0.29 -1.66 16 5 C -0.17 -3.36 5.88 -104.96 -0.62 -3.98 16 6 C 0.51 11.68 7.81 34.45 0.27 11.95 16 7 O -0.53 -12.68 13.15 -19.28 -0.25 -12.94 16 8 O -0.32 -7.97 9.07 -40.64 -0.37 -8.34 16 9 C 0.12 3.07 4.39 37.16 0.16 3.24 16 10 C 0.05 1.16 2.20 -155.66 -0.34 0.82 16 11 C -0.48 -13.00 8.79 -34.44 -0.30 -13.30 16 12 H 0.06 1.67 7.82 -52.48 -0.41 1.26 16 13 C 0.07 2.00 5.36 -17.82 -0.10 1.91 16 14 N -0.88 -24.68 10.25 55.43 0.57 -24.11 16 15 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C -0.20 -4.42 9.96 -26.69 -0.27 -4.68 16 20 C -0.21 -4.62 9.92 -26.70 -0.26 -4.88 16 21 C -0.01 -0.17 9.55 -39.57 -0.38 -0.55 16 22 C -0.22 -3.10 9.82 -39.81 -0.39 -3.49 16 23 C 0.24 3.17 6.73 -83.86 -0.56 2.60 16 24 N -0.87 -7.66 8.96 32.41 0.29 -7.37 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.70 6.57 -51.93 -0.34 0.35 16 27 H 0.05 0.44 6.54 -51.93 -0.34 0.10 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 0.73 6.32 -51.93 -0.33 0.40 16 30 H 0.10 1.84 5.93 -51.93 -0.31 1.53 16 31 H 0.02 0.45 8.09 -51.92 -0.42 0.03 16 32 H 0.12 3.26 5.87 -51.93 -0.31 2.96 16 33 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 36 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.14 2.52 7.61 -52.49 -0.40 2.12 16 39 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.40 2.71 8.83 -40.82 -0.36 2.35 16 41 H 0.40 2.76 6.80 -40.82 -0.28 2.48 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -30.67 336.89 -8.71 -39.38 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.58 Total: 8.34 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -3.42 Total: -16.19 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.86 Total: -31.48 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.62 Total: -21.28 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.67 -8.71 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922978801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.686 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds