Wall clock time and date at job start Tue Mar 31 2020 06:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37649 * 120.03047 * 2 1 4 4 C 1.50701 * 120.09756 * 0.03786 * 3 2 1 5 5 C 1.39850 * 119.79921 * 180.29336 * 3 2 1 6 6 C 1.47382 * 120.07533 * 179.71916 * 5 3 2 7 7 O 1.21523 * 119.99686 * 353.17212 * 6 5 3 8 8 O 1.34756 * 120.00509 * 173.44265 * 6 5 3 9 9 C 1.45192 * 117.00409 * 184.86137 * 8 6 5 10 10 C 1.53006 * 109.47420 * 175.22956 * 9 8 6 11 11 C 1.50700 * 115.54400 * 305.63345 * 10 9 8 12 12 H 1.08005 * 119.99673 * 144.26475 * 11 10 9 13 13 C 1.37873 * 120.00111 * 324.25568 * 11 10 9 14 14 N 1.31509 * 120.00492 * 3.20998 * 13 11 10 15 15 Si 1.86808 * 119.99806 * 183.20793 * 13 11 10 16 16 H 1.48494 * 109.47117 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47006 * 120.00134 * 15 13 11 18 18 H 1.48500 * 109.46901 * 240.00261 * 15 13 11 19 19 C 1.52998 * 117.50042 * 159.96549 * 10 9 8 20 20 C 1.52996 * 117.50223 * 91.30283 * 10 9 8 21 21 C 1.39863 * 119.85431 * 359.44853 * 5 3 2 22 22 C 1.36577 * 120.04709 * 0.27193 * 21 5 3 23 23 C 1.39237 * 120.20501 * 359.97438 * 22 21 5 24 24 N 1.39007 * 119.92558 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.46824 * 270.28561 * 1 2 3 26 26 H 1.08999 * 109.46881 * 30.28298 * 1 2 3 27 27 H 1.08993 * 109.47235 * 150.28078 * 1 2 3 28 28 H 1.08998 * 109.46701 * 262.97681 * 4 3 2 29 29 H 1.08997 * 109.47107 * 22.98062 * 4 3 2 30 30 H 1.09003 * 109.46701 * 142.97884 * 4 3 2 31 31 H 1.09008 * 109.47299 * 295.22898 * 9 8 6 32 32 H 1.08996 * 109.47251 * 55.22389 * 9 8 6 33 33 H 0.96999 * 120.00643 * 184.99903 * 14 13 11 34 34 H 1.09001 * 117.49912 * 359.97438 * 19 10 9 35 35 H 1.08999 * 117.50102 * 145.02135 * 19 10 9 36 36 H 1.08998 * 117.50159 * 214.98215 * 20 10 9 37 37 H 1.09004 * 117.49679 * 359.97438 * 20 10 9 38 38 H 1.08000 * 119.97013 * 180.25729 * 21 5 3 39 39 H 1.07999 * 119.89400 * 179.97438 * 22 21 5 40 40 H 0.97001 * 120.00456 * 359.97438 * 24 23 22 41 41 H 0.97005 * 119.99998 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1917 0.0000 4 6 1.4453 2.4985 0.0009 5 6 3.5943 1.1861 -0.0062 6 6 4.3380 2.4585 -0.0125 7 8 3.7419 3.5100 -0.1374 8 8 5.6796 2.4556 0.1148 9 6 6.3356 3.7474 0.2094 10 6 7.8300 3.5429 0.4667 11 6 8.1730 2.6856 1.6577 12 1 9.0291 2.0283 1.6212 13 6 7.3939 2.7406 2.7939 14 7 6.3157 3.4932 2.8162 15 14 7.8700 1.7459 4.3017 16 1 9.1159 0.9880 4.0216 17 1 8.0958 2.6623 5.4482 18 1 6.7770 0.7971 4.6341 19 6 8.7688 4.7059 0.1395 20 6 8.7520 3.4613 -0.7515 21 6 4.2857 -0.0297 -0.0007 22 6 3.5961 -1.2086 0.0051 23 6 2.2037 -1.2056 0.0061 24 7 1.5076 -2.4088 0.0125 25 1 -0.3633 0.0051 1.0276 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3633 -0.8924 -0.5094 28 1 1.3727 2.8764 -1.0189 29 1 0.4442 2.3422 0.4026 30 1 1.9762 3.2220 0.6196 31 1 6.1991 4.2935 -0.7241 32 1 5.9001 4.3168 1.0304 33 1 5.8080 3.5891 3.6372 34 1 8.3219 5.6165 -0.2596 35 1 9.6348 4.8506 0.7853 36 1 9.6069 2.7878 -0.6915 37 1 8.2939 3.5528 -1.7364 38 1 5.3657 -0.0362 -0.0013 39 1 4.1324 -2.1459 0.0089 40 1 1.9919 -3.2493 0.0160 41 1 0.5376 -2.4080 0.0129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922978801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:28 Heat of formation + Delta-G solvation = -53.741311 kcal Electronic energy + Delta-G solvation = -23248.794209 eV Core-core repulsion = 19900.619329 eV Total energy + Delta-G solvation = -3348.174880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.46667 -40.20683 -38.48522 -36.73770 -35.73825 -34.40386 -34.17279 -30.90505 -29.22926 -27.91155 -27.30841 -27.20436 -23.99987 -22.99763 -22.02217 -21.28510 -21.05155 -18.60317 -18.45422 -17.89240 -17.41495 -17.18040 -17.06198 -16.45903 -15.62888 -15.48450 -15.24696 -14.91857 -14.63125 -14.10100 -13.91843 -13.90434 -13.63434 -13.44788 -13.29304 -13.18546 -13.03221 -12.93775 -12.66168 -12.54518 -12.30061 -12.11423 -11.76951 -11.62893 -11.47492 -11.16724 -10.89359 -10.82421 -10.65848 -10.14244 -9.60396 -8.48678 -7.98909 -6.17925 0.02145 0.46472 1.40261 1.42928 1.53896 1.79195 2.18499 2.43022 2.88424 2.93602 3.07270 3.59257 3.82560 3.89205 4.04548 4.18430 4.27402 4.35070 4.41015 4.55202 4.58896 4.69219 4.79270 4.82674 4.86496 4.88398 4.91249 4.94756 5.02669 5.17646 5.21206 5.29265 5.34244 5.43969 5.46662 5.52560 5.68815 5.83316 5.86678 6.02598 6.34357 6.48825 6.81039 6.94857 7.16877 7.46029 8.94713 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016816 B = 0.005161 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.646015 B = 5424.473982 C = 6039.626294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.191 4.191 3 C 0.013 3.987 4 C -0.116 4.116 5 C -0.215 4.215 6 C 0.497 3.503 7 O -0.554 6.554 8 O -0.335 6.335 9 C 0.130 3.870 10 C 0.005 3.995 11 C -0.492 4.492 12 H 0.057 0.943 13 C 0.029 3.971 14 N -0.905 5.905 15 Si 0.954 3.046 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.285 1.285 19 C -0.186 4.186 20 C -0.188 4.188 21 C -0.024 4.024 22 C -0.216 4.216 23 C 0.260 3.740 24 N -0.846 5.846 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.021 0.979 32 H 0.086 0.914 33 H 0.257 0.743 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.123 0.877 39 H 0.152 0.848 40 H 0.412 0.588 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.176 -11.941 -5.633 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.196 4.196 3 C 0.012 3.988 4 C -0.172 4.172 5 C -0.218 4.218 6 C 0.346 3.654 7 O -0.449 6.449 8 O -0.250 6.250 9 C 0.056 3.944 10 C 0.005 3.995 11 C -0.529 4.529 12 H 0.075 0.925 13 C -0.171 4.171 14 N -0.544 5.544 15 Si 0.779 3.221 16 H -0.188 1.188 17 H -0.205 1.205 18 H -0.211 1.211 19 C -0.223 4.223 20 C -0.225 4.225 21 C -0.043 4.043 22 C -0.238 4.238 23 C 0.150 3.850 24 N -0.385 5.385 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.141 0.859 39 H 0.169 0.831 40 H 0.243 0.757 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -12.476 -11.642 -5.572 17.951 hybrid contribution 0.559 -0.010 0.836 1.006 sum -11.917 -11.652 -4.737 17.327 Atomic orbital electron populations 1.20666 0.88238 1.03845 1.02961 1.19361 0.97670 0.89918 1.12659 1.19784 0.90760 0.96517 0.91738 1.21031 0.99780 0.93469 1.02929 1.18930 0.93456 0.90581 1.18841 1.21616 0.81583 0.90008 0.72182 1.90639 1.69723 1.35207 1.49307 1.86475 1.20027 1.36668 1.81782 1.22551 0.92377 0.81406 0.98044 1.19094 0.87320 0.98579 0.94543 1.20707 1.11350 1.23104 0.97751 0.92513 1.25635 0.93895 0.96182 1.01389 1.69974 1.16668 1.40767 1.26969 0.85570 0.78223 0.78712 0.79554 1.18825 1.20521 1.21133 1.22989 1.03228 0.92242 1.03886 1.22955 1.03496 1.01227 0.94831 1.20960 1.00287 0.91362 0.91705 1.20475 0.92523 0.98585 1.12244 1.17793 0.90997 0.87209 0.89012 1.42444 1.09970 1.04401 1.81672 0.90684 0.90696 0.89776 0.90831 0.89239 0.92114 0.96083 0.89620 0.93374 0.90130 0.89589 0.89553 0.89775 0.85905 0.83050 0.75711 0.75672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 8.74 71.24 0.62 -1.03 16 2 C -0.19 -4.84 5.89 -19.76 -0.12 -4.96 16 3 C 0.01 0.45 5.91 -19.61 -0.12 0.33 16 4 C -0.12 -3.74 8.06 71.24 0.57 -3.17 16 5 C -0.21 -8.72 5.88 -20.09 -0.12 -8.84 16 6 C 0.50 24.41 7.81 70.23 0.55 24.96 16 7 O -0.55 -28.45 13.15 19.76 0.26 -28.19 16 8 O -0.33 -17.69 9.07 -56.67 -0.51 -18.20 16 9 C 0.13 6.95 4.39 71.98 0.32 7.27 16 10 C 0.01 0.26 2.20 -52.93 -0.12 0.14 16 11 C -0.49 -27.35 8.79 25.60 0.22 -27.12 16 12 H 0.06 3.11 7.82 -2.91 -0.02 3.09 16 13 C 0.03 1.59 5.36 84.65 0.45 2.04 16 14 N -0.91 -52.80 10.25 21.44 0.22 -52.58 16 15 Si 0.95 44.20 29.54 68.60 2.03 46.22 16 16 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 19 C -0.19 -8.33 9.96 30.62 0.30 -8.02 16 20 C -0.19 -8.19 9.92 30.62 0.30 -7.89 16 21 C -0.02 -0.85 9.55 22.27 0.21 -0.64 16 22 C -0.22 -5.77 9.82 22.12 0.22 -5.55 16 23 C 0.26 5.90 6.73 38.49 0.26 6.16 16 24 N -0.85 -10.70 8.96 -51.38 -0.46 -11.16 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.21 6.57 -2.39 -0.02 1.19 16 27 H 0.08 0.90 6.54 -2.39 -0.02 0.88 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.09 2.19 6.32 -2.39 -0.02 2.18 16 30 H 0.06 2.43 5.93 -2.39 -0.01 2.42 16 31 H 0.02 1.07 8.09 -2.38 -0.02 1.05 16 32 H 0.09 5.11 5.87 -2.39 -0.01 5.09 16 33 H 0.26 14.51 8.32 -92.71 -0.77 13.74 16 34 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 35 H 0.09 3.77 8.14 -2.39 -0.02 3.75 16 36 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 37 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 38 H 0.12 4.68 7.61 -2.91 -0.02 4.66 16 39 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 40 H 0.41 3.49 8.83 -92.71 -0.82 2.67 16 41 H 0.41 3.41 6.80 -92.70 -0.63 2.78 16 Total: -1.00 -70.21 336.89 4.72 -65.49 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: -0.38 Total: 24.75 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 3.57 Total: -26.32 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -0.24 Total: -63.75 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.25 Total: -46.39 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -70.21 4.72 -65.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922978801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.747 kcal (2) G-P(sol) polarization free energy of solvation -70.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds