Wall clock time and date at job start Tue Mar 31 2020 07:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38367 * 119.45529 * 2 1 4 4 C 1.38336 * 119.31050 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.85795 * 179.97438 * 4 3 2 6 6 C 1.40082 * 118.28392 * 359.97438 * 4 3 2 7 7 C 1.47717 * 120.56242 * 180.02562 * 6 4 3 8 8 O 1.21475 * 120.00131 * 89.99780 * 7 6 4 9 9 O 1.34712 * 120.00207 * 269.99574 * 7 6 4 10 10 C 1.45201 * 117.00089 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46888 * 180.02562 * 10 9 7 12 12 C 1.50697 * 115.55387 * 65.10532 * 11 10 9 13 13 H 1.07997 * 120.00637 * 266.11367 * 12 11 10 14 14 C 1.37879 * 119.99564 * 86.11413 * 12 11 10 15 15 N 1.31516 * 120.00298 * 353.69972 * 14 12 11 16 16 Si 1.86804 * 119.99668 * 173.70665 * 14 12 11 17 17 H 1.48498 * 109.47321 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47128 * 120.00018 * 16 14 12 19 19 H 1.48503 * 109.46914 * 239.99578 * 16 14 12 20 20 C 1.53006 * 117.49641 * 279.43576 * 11 10 9 21 21 C 1.53008 * 117.49620 * 210.77654 * 11 10 9 22 22 C 1.39566 * 118.87076 * 0.27466 * 6 4 3 23 23 C 1.50697 * 119.72020 * 179.72763 * 22 6 4 24 24 N 1.31692 * 120.56109 * 359.40817 * 22 6 4 25 25 H 1.09001 * 109.47245 * 90.00298 * 1 2 3 26 26 H 1.09002 * 109.47011 * 210.00084 * 1 2 3 27 27 H 1.08998 * 109.47790 * 330.00042 * 1 2 3 28 28 H 1.08002 * 120.34100 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.47269 * 270.02311 * 5 4 3 30 30 H 1.08998 * 109.47286 * 30.02594 * 5 4 3 31 31 H 1.09010 * 109.47024 * 150.02025 * 5 4 3 32 32 H 1.09003 * 109.47351 * 300.00444 * 10 9 7 33 33 H 1.08999 * 109.46864 * 60.00321 * 10 9 7 34 34 H 0.97001 * 119.99627 * 179.97438 * 15 14 12 35 35 H 1.08996 * 117.49594 * 0.02562 * 20 11 10 36 36 H 1.08997 * 117.49938 * 145.02474 * 20 11 10 37 37 H 1.09000 * 117.49999 * 214.97330 * 21 11 10 38 38 H 1.09001 * 117.49885 * 359.97438 * 21 11 10 39 39 H 1.09001 * 109.47513 * 89.99692 * 23 22 6 40 40 H 1.08999 * 109.47491 * 209.99993 * 23 22 6 41 41 H 1.08997 * 109.47268 * 329.99614 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1873 1.2048 0.0000 4 6 3.5707 1.2013 -0.0005 5 6 4.3469 2.4930 -0.0011 6 6 4.2313 -0.0339 -0.0005 7 6 5.7072 -0.0964 -0.0005 8 8 6.3140 -0.1220 1.0515 9 8 6.3802 -0.1250 -1.1671 10 6 7.8289 -0.1869 -1.0911 11 6 8.4131 -0.2110 -2.5049 12 6 8.1856 1.0336 -3.3236 13 1 7.3373 1.0946 -3.9892 14 6 9.0605 2.0944 -3.2229 15 7 10.0208 2.0719 -2.3246 16 14 8.8817 3.5639 -4.3624 17 1 7.7315 3.3449 -5.2758 18 1 8.6484 4.7894 -3.5568 19 1 10.1235 3.7252 -5.1606 20 6 8.4204 -1.5509 -3.2435 21 6 9.7299 -0.9622 -2.7124 22 6 3.4714 -1.2046 -0.0058 23 6 4.1624 -2.5438 -0.0121 24 7 2.1557 -1.1488 0.0010 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 1.6440 2.1382 -0.0004 29 1 4.5333 2.8045 -1.0289 30 1 3.7716 3.2629 0.5131 31 1 5.2973 2.3460 0.5121 32 1 8.2025 0.6879 -0.5587 33 1 8.1265 -1.0905 -0.5591 34 1 10.6365 2.8181 -2.2541 35 1 8.0085 -2.4151 -2.7223 36 1 8.2610 -1.5322 -4.3216 37 1 10.4313 -0.5564 -3.4414 38 1 10.1800 -1.4388 -1.8416 39 1 4.3292 -2.8715 1.0140 40 1 3.5380 -3.2724 -0.5292 41 1 5.1197 -2.4563 -0.5257 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923466686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:36 Heat of formation + Delta-G solvation = -41.558848 kcal Electronic energy + Delta-G solvation = -23059.079520 eV Core-core repulsion = 19711.432911 eV Total energy + Delta-G solvation = -3347.646609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82187 -39.32370 -36.81110 -35.25132 -34.26986 -33.82973 -31.99661 -29.33082 -28.14316 -27.58878 -26.56440 -25.26178 -22.80859 -21.32449 -21.16075 -20.33542 -19.30977 -17.46949 -17.16144 -16.72908 -15.78055 -15.19571 -15.04052 -14.87413 -14.59403 -14.15474 -13.72566 -13.35404 -13.29024 -13.17172 -13.00455 -12.76969 -12.37880 -12.24856 -12.14539 -12.06736 -11.82615 -11.71383 -11.60922 -11.04145 -10.89442 -10.58795 -10.36673 -10.27183 -9.93237 -9.71012 -9.50220 -9.45729 -8.86260 -8.84073 -8.50989 -8.25270 -6.11100 -4.16243 0.83085 1.15410 2.51216 3.16942 3.24113 3.32765 3.37143 3.59029 4.07251 4.35389 4.49461 4.50908 4.94674 4.97517 5.18305 5.22795 5.29990 5.32491 5.40026 5.42951 5.46592 5.57427 5.60744 5.65408 5.76316 5.91745 5.98236 6.02010 6.10498 6.18749 6.19601 6.28154 6.46464 6.54457 6.61893 6.69891 6.99638 7.10707 7.31593 7.42159 7.82715 7.87567 8.24388 8.36575 8.86102 9.49773 10.98247 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.004838 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.371965 B = 5786.119868 C = 6589.507052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.146 3.854 3 C -0.184 4.184 4 C 0.009 3.991 5 C -0.128 4.128 6 C -0.158 4.158 7 C 0.512 3.488 8 O -0.509 6.509 9 O -0.327 6.327 10 C 0.113 3.887 11 C 0.036 3.964 12 C -0.488 4.488 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.881 5.881 16 Si 0.890 3.110 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.205 4.205 21 C -0.143 4.143 22 C 0.179 3.821 23 C -0.112 4.112 24 N -0.490 5.490 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.141 0.859 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.540 -2.965 4.506 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.009 3.991 3 C -0.204 4.204 4 C 0.002 3.998 5 C -0.185 4.185 6 C -0.162 4.162 7 C 0.354 3.646 8 O -0.398 6.398 9 O -0.241 6.241 10 C 0.040 3.960 11 C 0.036 3.964 12 C -0.526 4.526 13 H 0.082 0.918 14 C -0.134 4.134 15 N -0.517 5.517 16 Si 0.718 3.282 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.242 4.242 21 C -0.181 4.181 22 C 0.040 3.960 23 C -0.169 4.169 24 N -0.201 5.201 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.159 0.841 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.617 -3.628 4.860 15.825 hybrid contribution 0.719 1.702 -0.424 1.896 sum -13.897 -1.926 4.436 14.715 Atomic orbital electron populations 1.20734 0.88497 1.03528 1.03297 1.21403 0.97082 0.88108 0.92554 1.21713 0.93392 0.99549 1.05735 1.20348 0.93866 0.94420 0.91181 1.20988 1.00145 0.93011 1.04320 1.19983 0.91606 0.95070 1.09515 1.20875 0.87886 0.72687 0.83128 1.90825 1.69832 1.45947 1.33238 1.86705 1.24406 1.81494 1.31535 1.23002 0.73012 1.00274 0.99715 1.18779 0.96121 0.91152 0.90367 1.20418 1.10712 0.97790 1.23695 0.91847 1.25007 0.95120 0.98134 0.95122 1.70008 1.17305 1.31581 1.32837 0.86561 0.78179 0.82484 0.81001 1.19582 1.20993 1.20862 1.23019 1.03408 0.97945 0.99856 1.22541 0.90974 1.03115 1.01431 1.21236 0.88875 0.94428 0.91413 1.20842 1.00239 0.92177 1.03638 1.67377 1.08504 1.29087 1.15101 0.90101 0.90338 0.90561 0.84114 0.88919 0.90354 0.90565 0.90473 0.94092 0.92936 0.91512 0.90027 0.89366 0.91599 0.89734 0.89546 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.16 36.00 0.37 -0.49 16 2 C 0.15 1.82 6.78 -82.50 -0.56 1.26 16 3 C -0.18 -2.26 9.43 -39.50 -0.37 -2.63 16 4 C 0.01 0.14 5.95 -103.89 -0.62 -0.48 16 5 C -0.13 -1.79 9.69 36.01 0.35 -1.45 16 6 C -0.16 -2.75 5.77 -104.84 -0.60 -3.35 16 7 C 0.51 10.31 4.49 34.60 0.16 10.47 16 8 O -0.51 -11.19 16.90 -19.25 -0.33 -11.52 16 9 O -0.33 -7.24 10.17 -40.52 -0.41 -7.65 16 10 C 0.11 2.65 5.29 37.16 0.20 2.85 16 11 C 0.04 0.89 1.62 -155.66 -0.25 0.64 16 12 C -0.49 -13.12 8.78 -34.44 -0.30 -13.42 16 13 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 14 C 0.07 1.86 5.38 -17.82 -0.10 1.76 16 15 N -0.88 -24.39 12.88 55.43 0.71 -23.67 16 16 Si 0.89 20.70 29.54 -169.99 -5.02 15.67 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 C -0.21 -4.41 9.96 -26.68 -0.27 -4.67 16 21 C -0.14 -3.27 9.37 -26.68 -0.25 -3.52 16 22 C 0.18 2.83 6.82 -82.16 -0.56 2.26 16 23 C -0.11 -1.52 9.79 36.00 0.35 -1.17 16 24 N -0.49 -7.21 10.17 -5.41 -0.05 -7.26 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 28 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 29 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.08 1.23 7.19 -51.92 -0.37 0.86 16 32 H 0.08 1.99 8.14 -51.93 -0.42 1.56 16 33 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 37 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.15 7.07 -51.93 -0.37 0.79 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -30.54 354.40 -8.42 -38.96 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.20 Total: 2.07 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -2.46 Total: -11.94 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.66 Total: -30.93 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.74 Total: -19.17 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.54 -8.42 -38.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923466686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.597 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds