Wall clock time and date at job start Tue Mar 31 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.46793 * 126.90720 * 2 1 4 4 C 1.39404 * 134.36795 * 359.97438 * 3 2 1 5 5 C 1.36733 * 119.71849 * 180.02562 * 4 3 2 6 6 C 1.38748 * 120.41169 * 359.65571 * 5 4 3 7 7 C 1.37846 * 120.68871 * 0.66073 * 6 5 4 8 8 C 1.38945 * 119.81609 * 359.37422 * 7 6 5 9 9 O 1.34803 * 133.49972 * 180.28044 * 8 7 6 10 10 C 1.34000 * 126.91201 * 180.02562 * 2 1 3 11 11 C 1.50696 * 124.91776 * 359.95466 * 10 2 1 12 12 H 1.09001 * 109.47320 * 345.00057 * 11 10 2 13 13 C 1.53009 * 109.46942 * 105.00050 * 11 10 2 14 14 N 1.46903 * 109.47365 * 224.99958 * 11 10 2 15 15 C 1.46892 * 111.00289 * 155.00279 * 14 11 10 16 16 C 1.53001 * 109.47057 * 180.02562 * 15 14 11 17 17 H 1.09001 * 109.47071 * 60.00046 * 16 15 14 18 18 O 1.42898 * 109.46980 * 299.99425 * 16 15 14 19 19 C 1.50704 * 109.46998 * 180.02562 * 16 15 14 20 20 H 1.07998 * 119.99830 * 359.97438 * 19 16 15 21 21 C 1.37870 * 120.00091 * 180.02562 * 19 16 15 22 22 N 1.31514 * 120.00035 * 359.97438 * 21 19 16 23 23 Si 1.86802 * 120.00170 * 179.97438 * 21 19 16 24 24 H 1.48499 * 109.47085 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47071 * 119.99739 * 23 21 19 26 26 H 1.48501 * 109.47178 * 239.99482 * 23 21 19 27 27 H 1.08994 * 109.47714 * 89.97059 * 1 2 3 28 28 H 1.09000 * 109.46915 * 209.97484 * 1 2 3 29 29 H 1.08998 * 109.47172 * 329.96884 * 1 2 3 30 30 H 1.08007 * 120.14022 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.79605 * 179.97438 * 5 4 3 32 32 H 1.08008 * 119.65824 * 180.33364 * 6 5 4 33 33 H 1.08002 * 120.09651 * 179.65776 * 7 6 5 34 34 H 1.09001 * 109.47107 * 59.99877 * 13 11 10 35 35 H 1.08998 * 109.47082 * 179.97438 * 13 11 10 36 36 H 1.08996 * 109.47073 * 299.99910 * 13 11 10 37 37 H 1.00900 * 110.99746 * 278.96203 * 14 11 10 38 38 H 1.09000 * 109.46952 * 299.99983 * 15 14 11 39 39 H 1.09001 * 109.47263 * 59.99766 * 15 14 11 40 40 H 0.96690 * 114.00344 * 300.00344 * 18 16 15 41 41 H 0.97006 * 120.00381 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3884 1.1738 0.0000 4 6 2.1770 2.5517 -0.0004 5 6 3.2479 3.4018 -0.0008 6 6 4.5420 2.9013 0.0064 7 6 4.7706 1.5420 0.0004 8 6 3.6963 0.6607 0.0002 9 8 3.5991 -0.6838 0.0000 10 6 2.3117 -1.0714 -0.0005 11 6 1.8418 -2.5032 -0.0001 12 1 0.7855 -2.5389 0.2665 13 6 2.0366 -3.1043 -1.3937 14 7 2.6202 -3.2739 0.9787 15 6 1.8661 -4.4443 1.4470 16 6 2.7071 -5.2197 2.4631 17 1 2.9395 -4.5744 3.3103 18 8 3.9215 -5.6513 1.8458 19 6 1.9337 -6.4208 2.9430 20 1 0.9415 -6.6117 2.5618 21 6 2.4925 -7.2753 3.8696 22 7 3.7006 -7.0425 4.3342 23 14 1.5336 -8.7637 4.4650 24 1 0.2091 -8.7999 3.7945 25 1 2.2877 -10.0010 4.1396 26 1 1.3415 -8.6733 5.9348 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 1.1715 2.9460 -0.0005 31 1 3.0855 4.4695 -0.0016 32 1 5.3790 3.5839 0.0115 33 1 5.7819 1.1629 0.0006 34 1 3.0929 -3.0686 -1.6603 35 1 1.6972 -4.1400 -1.3933 36 1 1.4591 -2.5325 -2.1200 37 1 3.5125 -3.5481 0.5958 38 1 0.9400 -4.1151 1.9182 39 1 1.6333 -5.0894 0.5997 40 1 3.7906 -6.2304 1.0827 41 1 4.0939 -7.6439 4.9859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930257674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:17 Heat of formation + Delta-G solvation = -32.054625 kcal Electronic energy + Delta-G solvation = -22487.701878 eV Core-core repulsion = 19140.467403 eV Total energy + Delta-G solvation = -3347.234475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.41172 -38.06234 -37.11168 -35.25065 -33.76840 -32.12861 -30.76308 -30.57193 -29.25894 -27.42735 -27.04880 -24.52596 -23.34688 -22.76997 -20.85339 -20.63000 -19.89899 -17.08798 -16.89847 -16.77052 -16.17362 -15.80702 -14.93109 -14.61175 -14.49431 -14.38517 -14.03371 -13.84382 -13.60541 -13.21296 -13.09080 -12.72794 -12.58531 -12.52081 -12.31886 -12.18802 -11.96818 -11.53922 -11.22618 -11.14478 -11.03572 -10.87781 -10.85060 -10.72293 -10.10432 -9.80992 -9.06702 -8.61418 -8.58716 -8.23301 -8.03815 -7.83887 -6.01436 -4.20295 0.91462 1.34823 2.37306 2.81694 3.25994 3.34278 3.37050 3.68627 4.23691 4.38212 4.61240 4.71389 4.86056 4.92395 5.01524 5.10878 5.16954 5.25690 5.30096 5.36727 5.50587 5.57008 5.59570 5.73514 5.75174 5.86280 5.96130 6.05052 6.09440 6.19548 6.25130 6.29110 6.38145 6.38554 6.50632 6.66793 6.82514 7.27270 7.43429 7.73247 7.78516 7.94665 8.19534 8.83307 9.36780 9.56965 11.02812 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.003220 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.591047 B = 8694.223490 C = 9032.701306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.194 4.194 3 C -0.120 4.120 4 C -0.075 4.075 5 C -0.140 4.140 6 C -0.103 4.103 7 C -0.104 4.104 8 C 0.051 3.949 9 O -0.178 6.178 10 C 0.075 3.925 11 C 0.153 3.847 12 H 0.107 0.893 13 C -0.180 4.180 14 N -0.678 5.678 15 C 0.035 3.965 16 C 0.232 3.768 17 H 0.064 0.936 18 O -0.564 6.564 19 C -0.573 4.573 20 H 0.056 0.944 21 C 0.079 3.921 22 N -0.857 5.857 23 Si 0.889 3.111 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.351 0.649 38 H 0.067 0.933 39 H 0.022 0.978 40 H 0.341 0.659 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 17.387 -12.021 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.196 4.196 3 C -0.121 4.121 4 C -0.093 4.093 5 C -0.158 4.158 6 C -0.121 4.121 7 C -0.123 4.123 8 C 0.003 3.997 9 O -0.078 6.078 10 C 0.026 3.974 11 C 0.042 3.958 12 H 0.124 0.876 13 C -0.239 4.239 14 N -0.310 5.310 15 C -0.093 4.093 16 C 0.174 3.826 17 H 0.082 0.918 18 O -0.366 6.366 19 C -0.612 4.612 20 H 0.074 0.926 21 C -0.127 4.127 22 N -0.492 5.492 23 Si 0.717 3.283 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.171 0.829 38 H 0.085 0.915 39 H 0.040 0.960 40 H 0.184 0.816 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.966 17.902 -10.861 21.148 hybrid contribution -0.793 -1.633 -0.724 1.955 sum -3.759 16.268 -11.585 20.322 Atomic orbital electron populations 1.20119 0.88733 1.02738 1.01770 1.20728 0.96424 0.90248 1.12216 1.19814 0.92620 0.94160 1.05458 1.20220 0.99321 0.90656 0.99128 1.20709 0.92375 0.99661 1.03092 1.20862 0.97331 0.93672 1.00201 1.19962 0.96747 0.91284 1.04290 1.19656 0.95480 0.81718 1.02836 1.84014 1.27954 1.20375 1.75497 1.22300 0.80065 0.96042 0.98975 1.20260 0.98386 0.85089 0.92037 0.87564 1.22515 1.02847 1.01674 0.96894 1.60533 1.06747 1.25540 1.38197 1.22934 0.98156 0.89634 0.98598 1.19432 0.81680 0.92002 0.89497 0.91815 1.86606 1.34125 1.68312 1.47559 1.21641 1.02498 1.10721 1.26294 0.92605 1.25041 0.94599 0.97730 0.95352 1.70097 1.13979 1.36635 1.28519 0.86611 0.80170 0.82850 0.78691 1.19735 1.20903 1.20854 0.91658 0.91244 0.91633 0.85920 0.85691 0.85076 0.85131 0.91852 0.91187 0.92007 0.82885 0.91492 0.95976 0.81623 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.13 36.00 0.36 -0.46 16 2 C -0.19 -2.73 6.35 -102.66 -0.65 -3.38 16 3 C -0.12 -1.70 6.38 -105.16 -0.67 -2.37 16 4 C -0.08 -0.86 10.05 -39.69 -0.40 -1.26 16 5 C -0.14 -1.39 9.98 -39.94 -0.40 -1.79 16 6 C -0.10 -1.03 10.01 -39.54 -0.40 -1.43 16 7 C -0.10 -1.29 10.07 -39.46 -0.40 -1.68 16 8 C 0.05 0.77 7.42 -38.47 -0.29 0.48 16 9 O -0.18 -2.98 10.58 3.93 0.04 -2.94 16 10 C 0.08 1.16 6.07 -35.80 -0.22 0.94 16 11 C 0.15 2.25 2.95 -68.86 -0.20 2.04 16 12 H 0.11 1.45 6.37 -51.93 -0.33 1.12 16 13 C -0.18 -2.25 9.14 37.16 0.34 -1.91 16 14 N -0.68 -12.26 6.23 -107.95 -0.67 -12.94 16 15 C 0.04 0.70 5.13 -3.83 -0.02 0.68 16 16 C 0.23 5.82 3.10 -27.88 -0.09 5.73 16 17 H 0.06 1.83 8.14 -51.93 -0.42 1.40 16 18 O -0.56 -14.24 12.07 -35.23 -0.43 -14.67 16 19 C -0.57 -15.56 8.76 -34.44 -0.30 -15.86 16 20 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 21 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 22 N -0.86 -25.43 12.84 55.43 0.71 -24.71 16 23 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.72 6.95 -51.93 -0.36 0.36 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 35 H 0.07 0.86 7.45 -51.93 -0.39 0.47 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.35 6.51 7.86 -39.29 -0.31 6.20 16 38 H 0.07 1.32 8.06 -51.93 -0.42 0.90 16 39 H 0.02 0.41 7.44 -51.93 -0.39 0.03 16 40 H 0.34 7.55 9.04 45.56 0.41 7.96 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -31.77 345.67 -8.70 -40.47 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -5.13 Total: 11.71 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -3.42 Total: -18.15 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.04 Total: -37.65 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.38 Total: -17.61 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.77 -8.70 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930257674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.416 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds