Wall clock time and date at job start Tue Mar 31 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.46793 * 126.90720 * 2 1 4 4 C 1.39404 * 134.36795 * 359.97438 * 3 2 1 5 5 C 1.36733 * 119.71849 * 180.02562 * 4 3 2 6 6 C 1.38748 * 120.41169 * 359.65571 * 5 4 3 7 7 C 1.37846 * 120.68871 * 0.66073 * 6 5 4 8 8 C 1.38945 * 119.81609 * 359.37422 * 7 6 5 9 9 O 1.34803 * 133.49972 * 180.28044 * 8 7 6 10 10 C 1.34000 * 126.91201 * 180.02562 * 2 1 3 11 11 C 1.50696 * 124.91776 * 359.95466 * 10 2 1 12 12 H 1.09001 * 109.47320 * 345.00057 * 11 10 2 13 13 C 1.53009 * 109.46942 * 105.00050 * 11 10 2 14 14 N 1.46903 * 109.47365 * 224.99958 * 11 10 2 15 15 C 1.46892 * 111.00289 * 155.00279 * 14 11 10 16 16 C 1.53001 * 109.47057 * 180.02562 * 15 14 11 17 17 H 1.09001 * 109.47071 * 60.00046 * 16 15 14 18 18 O 1.42898 * 109.46980 * 299.99425 * 16 15 14 19 19 C 1.50704 * 109.46998 * 180.02562 * 16 15 14 20 20 H 1.07998 * 119.99830 * 359.97438 * 19 16 15 21 21 C 1.37870 * 120.00091 * 180.02562 * 19 16 15 22 22 N 1.31514 * 120.00035 * 359.97438 * 21 19 16 23 23 Si 1.86802 * 120.00170 * 179.97438 * 21 19 16 24 24 H 1.48499 * 109.47085 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47071 * 119.99739 * 23 21 19 26 26 H 1.48501 * 109.47178 * 239.99482 * 23 21 19 27 27 H 1.08994 * 109.47714 * 89.97059 * 1 2 3 28 28 H 1.09000 * 109.46915 * 209.97484 * 1 2 3 29 29 H 1.08998 * 109.47172 * 329.96884 * 1 2 3 30 30 H 1.08007 * 120.14022 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.79605 * 179.97438 * 5 4 3 32 32 H 1.08008 * 119.65824 * 180.33364 * 6 5 4 33 33 H 1.08002 * 120.09651 * 179.65776 * 7 6 5 34 34 H 1.09001 * 109.47107 * 59.99877 * 13 11 10 35 35 H 1.08998 * 109.47082 * 179.97438 * 13 11 10 36 36 H 1.08996 * 109.47073 * 299.99910 * 13 11 10 37 37 H 1.00900 * 110.99746 * 278.96203 * 14 11 10 38 38 H 1.09000 * 109.46952 * 299.99983 * 15 14 11 39 39 H 1.09001 * 109.47263 * 59.99766 * 15 14 11 40 40 H 0.96690 * 114.00344 * 300.00344 * 18 16 15 41 41 H 0.97006 * 120.00381 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3884 1.1738 0.0000 4 6 2.1770 2.5517 -0.0004 5 6 3.2479 3.4018 -0.0008 6 6 4.5420 2.9013 0.0064 7 6 4.7706 1.5420 0.0004 8 6 3.6963 0.6607 0.0002 9 8 3.5991 -0.6838 0.0000 10 6 2.3117 -1.0714 -0.0005 11 6 1.8418 -2.5032 -0.0001 12 1 0.7855 -2.5389 0.2665 13 6 2.0366 -3.1043 -1.3937 14 7 2.6202 -3.2739 0.9787 15 6 1.8661 -4.4443 1.4470 16 6 2.7071 -5.2197 2.4631 17 1 2.9395 -4.5744 3.3103 18 8 3.9215 -5.6513 1.8458 19 6 1.9337 -6.4208 2.9430 20 1 0.9415 -6.6117 2.5618 21 6 2.4925 -7.2753 3.8696 22 7 3.7006 -7.0425 4.3342 23 14 1.5336 -8.7637 4.4650 24 1 0.2091 -8.7999 3.7945 25 1 2.2877 -10.0010 4.1396 26 1 1.3415 -8.6733 5.9348 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 1.1715 2.9460 -0.0005 31 1 3.0855 4.4695 -0.0016 32 1 5.3790 3.5839 0.0115 33 1 5.7819 1.1629 0.0006 34 1 3.0929 -3.0686 -1.6603 35 1 1.6972 -4.1400 -1.3933 36 1 1.4591 -2.5325 -2.1200 37 1 3.5125 -3.5481 0.5958 38 1 0.9400 -4.1151 1.9182 39 1 1.6333 -5.0894 0.5997 40 1 3.7906 -6.2304 1.0827 41 1 4.0939 -7.6439 4.9859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930257674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:16 Heat of formation + Delta-G solvation = -53.958283 kcal Electronic energy + Delta-G solvation = -22488.651692 eV Core-core repulsion = 19140.467403 eV Total energy + Delta-G solvation = -3348.184289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.43390 -39.11905 -38.52556 -36.87766 -34.85481 -34.24802 -32.12589 -31.46113 -30.28675 -29.17202 -27.99145 -26.17494 -24.55725 -23.74078 -22.46048 -21.86387 -20.93578 -19.05833 -17.92547 -17.87849 -17.23536 -16.98424 -16.67096 -16.28600 -16.07620 -15.69326 -15.26282 -14.96237 -14.66477 -14.47692 -14.30383 -14.03034 -13.83736 -13.57734 -13.30527 -13.16560 -13.10649 -12.93922 -12.87238 -12.70073 -12.56981 -12.47053 -12.20145 -12.02108 -11.74405 -11.07013 -10.75411 -10.71830 -10.19195 -9.55438 -9.35537 -8.93952 -8.13476 -6.39895 -0.01364 0.43029 1.34833 1.40513 1.41704 1.53964 1.82460 2.38628 2.79437 3.10802 3.14511 3.50897 3.71908 3.89261 4.00624 4.07340 4.14675 4.22116 4.28976 4.41451 4.47721 4.50849 4.53402 4.60974 4.71025 4.74945 4.83318 4.84854 5.00574 5.05921 5.11588 5.12501 5.31942 5.40488 5.52795 5.58297 5.62742 5.70164 5.81354 5.99326 6.13026 6.31168 6.42043 6.74406 7.33533 7.55061 8.91529 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.003220 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.591047 B = 8694.223490 C = 9032.701306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.190 4.190 3 C -0.145 4.145 4 C -0.081 4.081 5 C -0.135 4.135 6 C -0.092 4.092 7 C -0.126 4.126 8 C 0.015 3.985 9 O -0.207 6.207 10 C 0.041 3.959 11 C 0.157 3.843 12 H 0.118 0.882 13 C -0.172 4.172 14 N -0.692 5.692 15 C 0.057 3.943 16 C 0.231 3.769 17 H 0.016 0.984 18 O -0.579 6.579 19 C -0.584 4.584 20 H 0.065 0.935 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.963 3.037 24 H -0.260 1.260 25 H -0.280 1.280 26 H -0.281 1.281 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.137 0.863 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.345 0.655 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.354 0.646 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 18.846 -13.063 23.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.192 4.192 3 C -0.146 4.146 4 C -0.099 4.099 5 C -0.153 4.153 6 C -0.109 4.109 7 C -0.145 4.145 8 C -0.032 4.032 9 O -0.109 6.109 10 C -0.008 4.008 11 C 0.047 3.953 12 H 0.135 0.865 13 C -0.230 4.230 14 N -0.324 5.324 15 C -0.072 4.072 16 C 0.174 3.826 17 H 0.034 0.966 18 O -0.383 6.383 19 C -0.622 4.622 20 H 0.083 0.917 21 C -0.180 4.180 22 N -0.539 5.539 23 Si 0.788 3.212 24 H -0.184 1.184 25 H -0.205 1.205 26 H -0.207 1.207 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.164 0.836 31 H 0.180 0.820 32 H 0.184 0.816 33 H 0.155 0.845 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.164 0.836 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.199 0.801 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.689 19.372 -11.925 23.227 hybrid contribution -0.196 -1.891 -0.425 1.948 sum -4.885 17.481 -12.350 21.954 Atomic orbital electron populations 1.20233 0.86511 1.03410 1.03165 1.21194 0.97906 0.89896 1.10200 1.20155 0.92230 0.95488 1.06760 1.20608 1.01172 0.89634 0.98468 1.21201 0.91711 1.01363 1.01037 1.21354 0.98868 0.93023 0.97693 1.20330 0.96677 0.92218 1.05234 1.20235 0.97117 0.81435 1.04402 1.83941 1.28872 1.21609 1.76448 1.22436 0.80147 0.96579 1.01591 1.20314 0.98216 0.84523 0.92226 0.86481 1.22422 1.02644 1.01939 0.96011 1.60419 1.06816 1.24858 1.40269 1.22504 0.96987 0.90037 0.97693 1.19237 0.82015 0.91552 0.89831 0.96564 1.86537 1.34529 1.68888 1.48302 1.22050 1.02885 1.11137 1.26125 0.91731 1.25959 0.95483 1.01003 0.95556 1.70250 1.15980 1.38102 1.29533 0.85457 0.79053 0.78742 0.77968 1.18351 1.20536 1.20734 0.89769 0.91110 0.90388 0.83611 0.82036 0.81625 0.84469 0.92758 0.90798 0.90072 0.83572 0.91256 0.94373 0.80104 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 10.13 71.23 0.72 -0.79 16 2 C -0.19 -5.27 6.35 -18.59 -0.12 -5.39 16 3 C -0.15 -4.06 6.38 -20.21 -0.13 -4.19 16 4 C -0.08 -1.68 10.05 22.20 0.22 -1.46 16 5 C -0.14 -2.25 9.98 22.04 0.22 -2.03 16 6 C -0.09 -1.63 10.01 22.30 0.22 -1.40 16 7 C -0.13 -3.09 10.07 22.35 0.23 -2.87 16 8 C 0.02 0.47 7.42 22.99 0.17 0.64 16 9 O -0.21 -7.30 10.58 -8.84 -0.09 -7.40 16 10 C 0.04 1.28 6.07 24.72 0.15 1.43 16 11 C 0.16 4.62 2.95 44.17 0.13 4.75 16 12 H 0.12 3.10 6.37 -2.39 -0.02 3.09 16 13 C -0.17 -4.19 9.14 71.99 0.66 -3.53 16 14 N -0.69 -25.71 6.23 -495.45 -3.09 -28.79 16 15 C 0.06 2.27 5.13 86.31 0.44 2.71 16 16 C 0.23 11.98 3.10 29.85 0.09 12.07 16 17 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 18 O -0.58 -30.14 12.07 -148.98 -1.80 -31.94 16 19 C -0.58 -31.90 8.76 25.60 0.22 -31.67 16 20 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 21 C 0.02 1.25 5.40 84.65 0.46 1.70 16 22 N -0.90 -54.81 12.84 21.44 0.28 -54.53 16 23 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.37 6.95 -2.39 -0.02 1.35 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 32 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 33 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.05 1.41 8.13 -2.39 -0.02 1.39 16 35 H 0.07 1.72 7.45 -2.39 -0.02 1.71 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.35 13.36 7.86 -89.69 -0.71 12.66 16 38 H 0.07 2.72 8.06 -2.39 -0.02 2.70 16 39 H 0.04 1.40 7.44 -2.39 -0.02 1.38 16 40 H 0.35 15.99 9.04 -74.06 -0.67 15.32 16 41 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 Total: -1.00 -71.12 345.67 0.69 -70.43 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -0.32 Total: 36.93 kcal Atomic # 6 Polarization: -33.72 SS G_CDS: 3.69 Total: -30.03 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.81 Total: -83.33 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -1.89 Total: -39.34 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -71.12 0.69 -70.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930257674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.470 kcal (2) G-P(sol) polarization free energy of solvation -71.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds