Wall clock time and date at job start Tue Mar 31 2020 07:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99834 * 2 1 4 4 C 1.50704 * 109.47113 * 269.99871 * 3 2 1 5 5 H 1.08001 * 119.99666 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00223 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99793 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 119.99707 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47384 * 60.00452 * 8 6 4 10 10 H 1.48512 * 109.46903 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47592 * 300.00099 * 8 6 4 12 12 C 1.34769 * 120.00211 * 179.97438 * 2 1 3 13 13 O 1.21290 * 120.00138 * 185.35258 * 12 2 1 14 14 C 1.50696 * 120.00239 * 5.34838 * 12 2 1 15 15 C 1.52999 * 109.40826 * 177.25752 * 14 12 2 16 16 C 1.53069 * 109.44078 * 297.15702 * 14 12 2 17 17 C 1.53402 * 108.30073 * 168.30284 * 16 14 12 18 18 O 1.42827 * 108.38804 * 295.30942 * 17 16 14 19 19 C 1.35837 * 117.86604 * 49.16407 * 18 17 16 20 20 C 1.39152 * 118.50032 * 163.03796 * 19 18 17 21 21 C 1.37967 * 120.21212 * 179.54420 * 20 19 18 22 22 C 1.38293 * 119.96305 * 359.97438 * 21 20 19 23 23 C 1.38107 * 119.97783 * 0.07723 * 22 21 20 24 24 C 1.38367 * 121.80640 * 342.72573 * 19 18 17 25 25 H 1.08999 * 109.47116 * 264.96361 * 1 2 3 26 26 H 1.08994 * 109.47415 * 24.96697 * 1 2 3 27 27 H 1.09000 * 109.46457 * 144.96844 * 1 2 3 28 28 H 1.09000 * 109.47465 * 29.99460 * 3 2 1 29 29 H 1.08995 * 109.47613 * 149.99714 * 3 2 1 30 30 H 0.97001 * 119.99806 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47121 * 305.16257 * 15 14 12 32 32 H 1.09007 * 109.46867 * 65.15410 * 15 14 12 33 33 H 1.08994 * 109.47546 * 185.15781 * 15 14 12 34 34 H 1.09003 * 109.69878 * 288.01109 * 16 14 12 35 35 H 1.09003 * 109.69849 * 48.60418 * 16 14 12 36 36 H 1.09006 * 109.67796 * 55.03885 * 17 16 14 37 37 H 1.09003 * 109.68329 * 175.54646 * 17 16 14 38 38 H 1.08000 * 119.89869 * 359.52785 * 20 19 18 39 39 H 1.08001 * 120.02555 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.01108 * 179.80150 * 22 21 20 41 41 H 1.08003 * 119.83900 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1259 2.8780 -1.6729 7 7 3.5532 3.6182 -0.6733 8 14 3.4378 3.4167 -3.4340 9 1 2.1406 3.5935 -4.1348 10 1 4.1803 4.7030 -3.4341 11 1 4.2412 2.3821 -4.1333 12 6 2.1389 -1.1671 0.0005 13 8 3.3478 -1.1693 0.0985 14 6 1.3904 -2.4694 -0.1205 15 6 2.3891 -3.6278 -0.1626 16 6 0.4644 -2.6389 1.0864 17 6 -0.4898 -3.8058 0.8013 18 8 -1.3206 -3.4486 -0.3042 19 6 -0.7188 -2.9526 -1.4164 20 6 -1.4369 -2.9356 -2.6083 21 6 -0.8634 -2.4310 -3.7572 22 6 0.4289 -1.9397 -3.7257 23 6 1.1448 -1.9559 -2.5448 24 6 0.5753 -2.4636 -1.3889 25 1 -0.3633 -0.0902 1.0237 26 1 -0.3634 0.9316 -0.4337 27 1 -0.3632 -0.8415 -0.5899 28 1 1.6084 2.0284 0.5137 29 1 3.1498 1.1385 0.5138 30 1 4.0300 4.4441 -0.8506 31 1 3.1071 -3.4595 -0.9654 32 1 2.9164 -3.6877 0.7896 33 1 1.8557 -4.5612 -0.3420 34 1 1.0559 -2.8568 1.9757 35 1 -0.1090 -1.7248 1.2409 36 1 0.0852 -4.6985 0.5552 37 1 -1.1076 -3.9976 1.6786 38 1 -2.4462 -3.3189 -2.6342 39 1 -1.4232 -2.4197 -4.6807 40 1 0.8798 -1.5475 -4.6253 41 1 2.1541 -1.5720 -2.5229 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930594412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:47 Heat of formation + Delta-G solvation = -38.693091 kcal Electronic energy + Delta-G solvation = -24472.413251 eV Core-core repulsion = 21124.890910 eV Total energy + Delta-G solvation = -3347.522340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.39622 -38.76472 -37.40966 -34.96395 -34.89555 -32.51820 -30.67576 -30.20736 -28.33781 -27.83467 -25.95853 -24.82081 -23.66501 -22.83837 -21.97654 -19.79916 -18.45973 -17.70189 -16.78083 -16.49544 -16.13232 -15.76923 -15.36229 -14.93419 -14.40458 -14.29500 -14.09160 -13.80211 -13.54953 -13.07693 -13.04998 -12.47159 -12.20217 -12.09578 -12.01781 -11.93907 -11.81830 -11.56513 -11.25827 -11.16180 -10.91046 -10.85516 -10.56044 -10.48888 -10.45360 -10.15528 -9.64902 -9.01251 -8.52528 -8.43535 -8.02986 -7.61169 -6.04441 -4.09215 1.41042 1.55598 3.28537 3.29666 3.31292 3.35463 3.39305 3.81687 3.96762 4.43299 4.60885 4.67024 4.72387 4.88770 5.04793 5.17901 5.25004 5.29375 5.34768 5.39981 5.52529 5.55463 5.62213 5.75843 5.81048 5.83920 5.91909 6.01352 6.03389 6.15936 6.30413 6.37641 6.42155 6.61353 6.72898 6.87715 7.06098 7.43659 7.47391 7.54443 7.91997 8.23249 8.41075 8.88547 9.06633 9.55732 11.03667 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018184 B = 0.006293 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.449313 B = 4448.402240 C = 5189.898484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.592 5.592 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.521 3.479 13 O -0.539 6.539 14 C -0.039 4.039 15 C -0.121 4.121 16 C -0.165 4.165 17 C 0.065 3.935 18 O -0.316 6.316 19 C 0.130 3.870 20 C -0.155 4.155 21 C -0.088 4.088 22 C -0.146 4.146 23 C -0.065 4.065 24 C -0.137 4.137 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.031 0.969 29 H 0.044 0.956 30 H 0.264 0.736 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.736 -14.869 -0.081 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.322 5.322 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.306 3.694 13 O -0.417 6.417 14 C -0.042 4.042 15 C -0.179 4.179 16 C -0.203 4.203 17 C -0.010 4.010 18 O -0.231 6.231 19 C 0.085 3.915 20 C -0.173 4.173 21 C -0.106 4.106 22 C -0.165 4.165 23 C -0.083 4.083 24 C -0.138 4.138 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.189 -14.682 0.067 17.872 hybrid contribution 0.376 0.604 -0.911 1.156 sum -9.813 -14.079 -0.845 17.182 Atomic orbital electron populations 1.22045 0.81728 1.03630 0.99957 1.48023 1.06028 1.07571 1.70615 1.19316 0.92567 0.78025 0.97558 1.21392 1.36491 1.06330 0.92225 0.92401 1.24926 0.95392 0.96377 0.97334 1.69923 1.38333 1.14353 1.30766 0.86588 0.78380 0.77876 0.84783 1.20203 1.21164 1.20178 1.19859 0.87534 0.84463 0.77505 1.90664 1.13871 1.86911 1.50256 1.19725 0.95517 0.96215 0.92759 1.21696 0.97736 0.94892 1.03553 1.22636 0.98579 1.01080 0.97962 1.22974 0.93395 0.96640 0.88019 1.85964 1.36087 1.78473 1.22527 1.18598 0.91117 0.95143 0.86595 1.20488 1.00869 1.05753 0.90216 1.20900 0.95091 0.97202 0.97394 1.21036 0.95015 1.02141 0.98282 1.21073 1.00362 0.95413 0.91455 1.19388 0.94252 1.04713 0.95488 0.93812 0.90867 0.91128 0.95083 0.93757 0.92672 0.91365 0.91557 0.92639 0.89300 0.88579 0.91582 0.87398 0.85453 0.85624 0.85850 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 8.73 59.85 0.52 1.76 16 2 N -0.59 -12.83 2.85 -182.96 -0.52 -13.35 16 3 C 0.24 6.46 5.18 -5.19 -0.03 6.44 16 4 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 C 0.52 10.94 5.19 -10.99 -0.06 10.89 16 13 O -0.54 -13.50 15.49 5.55 0.09 -13.41 16 14 C -0.04 -0.62 0.39 -156.74 -0.06 -0.68 16 15 C -0.12 -1.76 7.48 37.16 0.28 -1.48 16 16 C -0.17 -2.11 4.64 -26.49 -0.12 -2.23 16 17 C 0.06 0.68 6.96 37.37 0.26 0.94 16 18 O -0.32 -4.08 10.27 -19.23 -0.20 -4.28 16 19 C 0.13 1.84 5.38 -39.19 -0.21 1.63 16 20 C -0.15 -1.98 9.94 -39.34 -0.39 -2.37 16 21 C -0.09 -1.10 10.04 -39.66 -0.40 -1.49 16 22 C -0.15 -2.13 10.05 -39.61 -0.40 -2.53 16 23 C -0.06 -1.09 9.05 -39.53 -0.36 -1.45 16 24 C -0.14 -2.15 2.50 -104.44 -0.26 -2.41 16 25 H 0.04 0.67 6.68 -51.93 -0.35 0.32 16 26 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 27 H 0.07 1.17 3.52 -51.93 -0.18 0.99 16 28 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.04 1.32 7.35 -51.93 -0.38 0.93 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.07 1.09 7.99 -51.93 -0.41 0.68 16 32 H 0.07 0.93 8.10 -51.92 -0.42 0.51 16 33 H 0.05 0.66 6.85 -51.93 -0.36 0.31 16 34 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 35 H 0.10 1.29 4.43 -51.93 -0.23 1.06 16 36 H 0.07 0.63 6.67 -51.93 -0.35 0.29 16 37 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 41 H 0.13 2.48 7.36 -52.48 -0.39 2.10 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -32.71 324.68 -7.22 -39.94 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.56 Total: 1.82 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -1.64 Total: -6.51 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.22 Total: -39.30 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.11 Total: -17.69 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.71 -7.22 -39.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930594412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.245 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds