Wall clock time and date at job start Tue Mar 31 2020 07:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99834 * 2 1 4 4 C 1.50704 * 109.47113 * 269.99871 * 3 2 1 5 5 H 1.08001 * 119.99666 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00223 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99793 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 119.99707 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47384 * 60.00452 * 8 6 4 10 10 H 1.48512 * 109.46903 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47592 * 300.00099 * 8 6 4 12 12 C 1.34769 * 120.00211 * 179.97438 * 2 1 3 13 13 O 1.21290 * 120.00138 * 185.35258 * 12 2 1 14 14 C 1.50696 * 120.00239 * 5.34838 * 12 2 1 15 15 C 1.52999 * 109.40826 * 177.25752 * 14 12 2 16 16 C 1.53069 * 109.44078 * 297.15702 * 14 12 2 17 17 C 1.53402 * 108.30073 * 168.30284 * 16 14 12 18 18 O 1.42827 * 108.38804 * 295.30942 * 17 16 14 19 19 C 1.35837 * 117.86604 * 49.16407 * 18 17 16 20 20 C 1.39152 * 118.50032 * 163.03796 * 19 18 17 21 21 C 1.37967 * 120.21212 * 179.54420 * 20 19 18 22 22 C 1.38293 * 119.96305 * 359.97438 * 21 20 19 23 23 C 1.38107 * 119.97783 * 0.07723 * 22 21 20 24 24 C 1.38367 * 121.80640 * 342.72573 * 19 18 17 25 25 H 1.08999 * 109.47116 * 264.96361 * 1 2 3 26 26 H 1.08994 * 109.47415 * 24.96697 * 1 2 3 27 27 H 1.09000 * 109.46457 * 144.96844 * 1 2 3 28 28 H 1.09000 * 109.47465 * 29.99460 * 3 2 1 29 29 H 1.08995 * 109.47613 * 149.99714 * 3 2 1 30 30 H 0.97001 * 119.99806 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47121 * 305.16257 * 15 14 12 32 32 H 1.09007 * 109.46867 * 65.15410 * 15 14 12 33 33 H 1.08994 * 109.47546 * 185.15781 * 15 14 12 34 34 H 1.09003 * 109.69878 * 288.01109 * 16 14 12 35 35 H 1.09003 * 109.69849 * 48.60418 * 16 14 12 36 36 H 1.09006 * 109.67796 * 55.03885 * 17 16 14 37 37 H 1.09003 * 109.68329 * 175.54646 * 17 16 14 38 38 H 1.08000 * 119.89869 * 359.52785 * 20 19 18 39 39 H 1.08001 * 120.02555 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.01108 * 179.80150 * 22 21 20 41 41 H 1.08003 * 119.83900 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1259 2.8780 -1.6729 7 7 3.5532 3.6182 -0.6733 8 14 3.4378 3.4167 -3.4340 9 1 2.1406 3.5935 -4.1348 10 1 4.1803 4.7030 -3.4341 11 1 4.2412 2.3821 -4.1333 12 6 2.1389 -1.1671 0.0005 13 8 3.3478 -1.1693 0.0985 14 6 1.3904 -2.4694 -0.1205 15 6 2.3891 -3.6278 -0.1626 16 6 0.4644 -2.6389 1.0864 17 6 -0.4898 -3.8058 0.8013 18 8 -1.3206 -3.4486 -0.3042 19 6 -0.7188 -2.9526 -1.4164 20 6 -1.4369 -2.9356 -2.6083 21 6 -0.8634 -2.4310 -3.7572 22 6 0.4289 -1.9397 -3.7257 23 6 1.1448 -1.9559 -2.5448 24 6 0.5753 -2.4636 -1.3889 25 1 -0.3633 -0.0902 1.0237 26 1 -0.3634 0.9316 -0.4337 27 1 -0.3632 -0.8415 -0.5899 28 1 1.6084 2.0284 0.5137 29 1 3.1498 1.1385 0.5138 30 1 4.0300 4.4441 -0.8506 31 1 3.1071 -3.4595 -0.9654 32 1 2.9164 -3.6877 0.7896 33 1 1.8557 -4.5612 -0.3420 34 1 1.0559 -2.8568 1.9757 35 1 -0.1090 -1.7248 1.2409 36 1 0.0852 -4.6985 0.5552 37 1 -1.1076 -3.9976 1.6786 38 1 -2.4462 -3.3189 -2.6342 39 1 -1.4232 -2.4197 -4.6807 40 1 0.8798 -1.5475 -4.6253 41 1 2.1541 -1.5720 -2.5229 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930594412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:46 Heat of formation + Delta-G solvation = -59.445200 kcal Electronic energy + Delta-G solvation = -24473.313130 eV Core-core repulsion = 21124.890910 eV Total energy + Delta-G solvation = -3348.422219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.60034 -40.26302 -38.43414 -36.74721 -36.25911 -34.64258 -31.68340 -31.30055 -30.03535 -29.27596 -27.52868 -26.31212 -24.93786 -24.21032 -23.36214 -21.09611 -19.85623 -18.94752 -18.58344 -18.04757 -17.35166 -17.09952 -16.96689 -16.33532 -16.05481 -15.63117 -15.36715 -15.04156 -14.66829 -14.59037 -14.31761 -14.21354 -13.72667 -13.54301 -13.43013 -13.12934 -13.10650 -13.04950 -12.82555 -12.71813 -12.55544 -12.36224 -12.21960 -12.02105 -11.76698 -11.59940 -11.47532 -10.67374 -10.59426 -9.72533 -9.49008 -9.07967 -8.25392 -6.40093 0.31085 0.45383 1.32871 1.37028 1.44305 1.69432 2.24062 2.35555 2.40546 2.77206 3.03969 3.41803 3.50162 3.62294 3.73340 3.99510 4.11902 4.20659 4.28175 4.35266 4.45475 4.49885 4.51204 4.55630 4.59468 4.76482 4.77751 4.81757 4.91618 4.97735 4.98705 5.07277 5.18075 5.21343 5.33267 5.50618 5.51716 5.62538 5.78541 5.83315 6.02442 6.46331 6.64338 6.71475 7.23018 7.39309 8.81850 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018184 B = 0.006293 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.449313 B = 4448.402240 C = 5189.898484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.597 5.597 3 C 0.259 3.741 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.964 3.036 9 H -0.260 1.260 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.514 3.486 13 O -0.593 6.593 14 C -0.031 4.031 15 C -0.117 4.117 16 C -0.164 4.164 17 C 0.067 3.933 18 O -0.315 6.315 19 C 0.133 3.867 20 C -0.150 4.150 21 C -0.076 4.076 22 C -0.158 4.158 23 C -0.092 4.092 24 C -0.150 4.150 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.021 0.979 29 H 0.000 1.000 30 H 0.268 0.732 31 H 0.040 0.960 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.146 0.854 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.129 0.871 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.875 -16.680 -0.998 21.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.327 5.327 3 C 0.138 3.862 4 C -0.579 4.579 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.568 5.568 8 Si 0.788 3.212 9 H -0.184 1.184 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.303 3.697 13 O -0.475 6.475 14 C -0.034 4.034 15 C -0.175 4.175 16 C -0.202 4.202 17 C -0.007 4.007 18 O -0.229 6.229 19 C 0.087 3.913 20 C -0.168 4.168 21 C -0.093 4.093 22 C -0.176 4.176 23 C -0.111 4.111 24 C -0.151 4.151 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.039 0.961 29 H 0.018 0.982 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.164 0.836 38 H 0.175 0.825 39 H 0.179 0.821 40 H 0.147 0.853 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.377 -16.512 -0.842 21.267 hybrid contribution 1.350 1.138 -0.597 1.864 sum -12.026 -15.374 -1.439 19.572 Atomic orbital electron populations 1.22238 0.78985 1.03845 1.02077 1.47979 1.07683 1.06349 1.70682 1.18788 0.91022 0.80103 0.96264 1.21626 1.36881 1.06611 0.92801 0.92884 1.25841 0.94866 0.96339 1.01936 1.70045 1.38839 1.14797 1.33076 0.85515 0.78900 0.77484 0.79263 1.18440 1.20153 1.20235 1.20866 0.87248 0.85964 0.75654 1.90620 1.16482 1.87899 1.52467 1.19675 0.95970 0.92849 0.94928 1.21687 0.97334 0.95838 1.02597 1.22681 0.98512 1.02251 0.96717 1.23245 0.93459 0.95527 0.88514 1.85983 1.36328 1.78116 1.22486 1.18691 0.90128 0.94713 0.87729 1.20905 1.01903 1.04509 0.89483 1.21267 0.93925 0.95228 0.98929 1.21203 0.96172 1.02643 0.97593 1.20885 0.99087 0.97612 0.93488 1.19293 0.95217 1.06049 0.94524 0.90874 0.91792 0.89524 0.96059 0.98229 0.92354 0.94090 0.91491 0.89344 0.88050 0.89175 0.90165 0.83648 0.82468 0.82061 0.85335 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.48 8.73 127.77 1.12 3.60 16 2 N -0.60 -27.05 2.85 -851.15 -2.43 -29.47 16 3 C 0.26 14.57 5.18 85.63 0.44 15.02 16 4 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.54 5.46 84.66 0.46 1.00 16 7 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 8 Si 0.96 45.66 29.54 68.60 2.03 47.69 16 9 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 C 0.51 22.70 5.19 87.66 0.45 23.16 16 13 O -0.59 -31.97 15.49 -3.06 -0.05 -32.02 16 14 C -0.03 -0.98 0.39 -53.63 -0.02 -1.00 16 15 C -0.12 -3.40 7.48 71.98 0.54 -2.86 16 16 C -0.16 -3.82 4.64 30.75 0.14 -3.68 16 17 C 0.07 1.11 6.96 72.12 0.50 1.61 16 18 O -0.32 -6.74 10.27 -91.72 -0.94 -7.68 16 19 C 0.13 3.33 5.38 22.52 0.12 3.45 16 20 C -0.15 -3.21 9.94 22.43 0.22 -2.99 16 21 C -0.08 -1.64 10.04 22.22 0.22 -1.41 16 22 C -0.16 -4.46 10.05 22.25 0.22 -4.24 16 23 C -0.09 -3.19 9.05 22.30 0.20 -2.99 16 24 C -0.15 -4.56 2.50 -19.75 -0.05 -4.61 16 25 H 0.07 2.13 6.68 -2.39 -0.02 2.12 16 26 H 0.06 2.34 8.03 -2.39 -0.02 2.32 16 27 H 0.09 2.78 3.52 -2.39 -0.01 2.77 16 28 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 29 H 0.00 -0.03 7.35 -2.39 -0.02 -0.04 16 30 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 31 H 0.04 1.39 7.99 -2.39 -0.02 1.37 16 32 H 0.07 1.89 8.10 -2.38 -0.02 1.87 16 33 H 0.09 1.94 6.85 -2.39 -0.02 1.92 16 34 H 0.10 2.11 8.06 -2.39 -0.02 2.09 16 35 H 0.09 2.21 4.43 -2.39 -0.01 2.20 16 36 H 0.08 1.16 6.67 -2.38 -0.02 1.14 16 37 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 39 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 40 H 0.13 3.36 8.06 -2.91 -0.02 3.33 16 41 H 0.08 3.61 7.36 -2.91 -0.02 3.58 16 Total: -1.00 -76.09 324.68 4.75 -71.34 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 1.04 Total: 14.70 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 4.82 Total: -7.69 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -2.14 Total: -86.33 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.99 Total: -39.70 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -76.09 4.75 -71.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930594412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.891 kcal (2) G-P(sol) polarization free energy of solvation -76.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds