Wall clock time and date at job start Tue Mar 31 2020 07:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46490 * 120.00352 * 2 1 4 4 C 1.50708 * 109.47134 * 270.00183 * 3 2 1 5 5 H 1.07995 * 119.99804 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99877 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99373 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00049 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47481 * 89.99770 * 8 6 4 10 10 H 1.48506 * 109.46888 * 210.00159 * 8 6 4 11 11 H 1.48499 * 109.47072 * 329.99329 * 8 6 4 12 12 C 1.34776 * 119.99688 * 180.02562 * 2 1 3 13 13 O 1.21282 * 120.00357 * 183.82277 * 12 2 1 14 14 C 1.50707 * 120.00259 * 3.82248 * 12 2 1 15 15 C 1.52999 * 109.43671 * 212.09900 * 14 12 2 16 16 C 1.53074 * 109.43421 * 92.22813 * 14 12 2 17 17 C 1.53414 * 108.30156 * 288.13031 * 16 14 12 18 18 O 1.42828 * 108.37241 * 295.29243 * 17 16 14 19 19 C 1.35843 * 117.85819 * 49.20034 * 18 17 16 20 20 C 1.39152 * 118.49348 * 163.02276 * 19 18 17 21 21 C 1.37966 * 120.21368 * 179.60541 * 20 19 18 22 22 C 1.38290 * 119.95997 * 359.97438 * 21 20 19 23 23 C 1.38104 * 119.98354 * 0.07103 * 22 21 20 24 24 C 1.38368 * 121.80835 * 342.74229 * 19 18 17 25 25 H 1.09000 * 109.46934 * 245.27199 * 1 2 3 26 26 H 1.09001 * 109.46837 * 5.26470 * 1 2 3 27 27 H 1.08997 * 109.47809 * 125.26542 * 1 2 3 28 28 H 1.09001 * 109.47142 * 29.99830 * 3 2 1 29 29 H 1.09002 * 109.47332 * 150.00105 * 3 2 1 30 30 H 0.97005 * 119.99192 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46742 * 60.00009 * 15 14 12 32 32 H 1.08996 * 109.46697 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.46916 * 300.00040 * 15 14 12 34 34 H 1.08995 * 109.69786 * 47.82990 * 16 14 12 35 35 H 1.08992 * 109.69598 * 168.43045 * 16 14 12 36 36 H 1.08997 * 109.68403 * 175.56937 * 17 16 14 37 37 H 1.09001 * 109.71202 * 55.02759 * 17 16 14 38 38 H 1.08004 * 119.88933 * 359.56880 * 20 19 18 39 39 H 1.07998 * 120.02022 * 180.02562 * 21 20 19 40 40 H 1.07992 * 120.01149 * 180.08675 * 22 21 20 41 41 H 1.07995 * 119.84515 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3457 3.2572 -2.9128 8 14 3.7331 3.9291 -0.2530 9 1 5.1067 3.5079 0.1229 10 1 3.7480 5.3559 -0.6645 11 1 2.8272 3.7592 0.9113 12 6 2.1388 -1.1672 -0.0005 13 8 3.3496 -1.1686 0.0695 14 6 1.3878 -2.4709 -0.0881 15 6 2.1471 -3.5490 0.6877 16 6 1.2658 -2.8908 -1.5551 17 6 0.2608 -1.9569 -2.2415 18 8 -1.0226 -2.1633 -1.6495 19 6 -1.1056 -2.1508 -0.2937 20 6 -2.3569 -1.9895 0.2933 21 6 -2.4833 -1.9797 1.6671 22 6 -1.3637 -2.1310 2.4647 23 6 -0.1201 -2.2903 1.8856 24 6 0.0132 -2.2989 0.5069 25 1 -0.3633 -0.4299 0.9334 26 1 -0.3633 1.0234 -0.0943 27 1 -0.3634 -0.5933 -0.8390 28 1 1.6085 2.0283 0.5138 29 1 3.1500 1.1382 0.5138 30 1 3.8219 4.0835 -3.0900 31 1 2.2363 -3.2502 1.7322 32 1 1.6041 -4.4920 0.6251 33 1 3.1416 -3.6727 0.2590 34 1 2.2369 -2.8078 -2.0429 35 1 0.9110 -3.9197 -1.6143 36 1 0.2150 -2.1857 -3.3063 37 1 0.5672 -0.9203 -2.1016 38 1 -3.2319 -1.8711 -0.3287 39 1 -3.4560 -1.8547 2.1194 40 1 -1.4618 -2.1248 3.5401 41 1 0.7527 -2.4079 2.5106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930594413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:50 Heat of formation + Delta-G solvation = 1.379739 kcal Electronic energy + Delta-G solvation = -24772.590075 eV Core-core repulsion = 21426.805423 eV Total energy + Delta-G solvation = -3345.784652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.14609 -38.69069 -37.61143 -35.26226 -34.80750 -32.50898 -30.82038 -30.28233 -29.00460 -28.16525 -26.07901 -24.24430 -23.87745 -22.64817 -21.77476 -20.53931 -18.26377 -17.90604 -17.03858 -16.82840 -16.22582 -16.03483 -15.44766 -14.83181 -14.63678 -14.14203 -13.97378 -13.78316 -13.47458 -13.35327 -13.00701 -12.87553 -12.47051 -12.16415 -11.98965 -11.90744 -11.76951 -11.64075 -11.48192 -11.23751 -10.90949 -10.87051 -10.59166 -10.50619 -10.28850 -10.15649 -9.58556 -9.31304 -8.62041 -8.57118 -7.87338 -7.68476 -6.12334 -4.11254 1.27057 1.42769 3.22517 3.27343 3.29852 3.33358 3.35382 3.69310 3.81964 4.37041 4.48008 4.63387 4.74991 4.81617 5.01689 5.07576 5.21387 5.28176 5.35351 5.41467 5.47178 5.52262 5.58032 5.68149 5.80649 5.84283 5.88284 5.96264 6.01083 6.05374 6.19064 6.22739 6.32427 6.47634 6.53615 6.68161 6.76538 6.91487 7.30899 7.43015 7.57278 8.20320 8.42562 8.86160 8.92003 9.48120 11.00826 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.005973 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.641921 B = 4686.432952 C = 4813.562214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.586 5.586 3 C 0.213 3.787 4 C -0.530 4.530 5 H 0.073 0.927 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.520 3.480 13 O -0.537 6.537 14 C -0.038 4.038 15 C -0.123 4.123 16 C -0.140 4.140 17 C 0.041 3.959 18 O -0.316 6.316 19 C 0.149 3.851 20 C -0.159 4.159 21 C -0.085 4.085 22 C -0.157 4.157 23 C -0.084 4.084 24 C -0.142 4.142 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.029 0.971 29 H 0.037 0.963 30 H 0.265 0.735 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.240 -13.065 7.878 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.317 5.317 3 C 0.092 3.908 4 C -0.568 4.568 5 H 0.091 0.909 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.306 3.694 13 O -0.415 6.415 14 C -0.041 4.041 15 C -0.180 4.180 16 C -0.178 4.178 17 C -0.033 4.033 18 O -0.230 6.230 19 C 0.104 3.896 20 C -0.178 4.178 21 C -0.103 4.103 22 C -0.175 4.175 23 C -0.102 4.102 24 C -0.143 4.143 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.132 0.868 37 H 0.109 0.891 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.656 -12.900 7.661 18.402 hybrid contribution 0.544 0.844 0.571 1.155 sum -10.112 -12.056 8.232 17.759 Atomic orbital electron populations 1.23296 0.81348 1.03519 1.01706 1.47814 1.06057 1.06886 1.70947 1.19738 0.92543 0.80053 0.98422 1.21299 1.37123 1.07286 0.91098 0.90860 1.24844 0.95173 0.97299 0.95599 1.69894 1.41399 1.23550 1.18615 0.86848 0.80130 0.79779 0.82960 1.19863 1.21000 1.19078 1.20025 0.87597 0.84514 0.77280 1.90657 1.13682 1.86861 1.50252 1.19717 0.91983 0.95691 0.96748 1.21689 1.00382 0.96112 0.99833 1.22220 1.01750 1.00291 0.93564 1.23337 0.80781 1.01341 0.97812 1.86035 1.33097 1.86864 1.17010 1.18464 0.93523 0.95000 0.82652 1.20543 0.95524 1.06749 0.94958 1.20882 0.98718 0.98161 0.92569 1.20945 0.92380 1.04319 0.99836 1.20903 0.97936 0.98083 0.93251 1.19578 0.93746 1.06505 0.94480 0.91334 0.91236 0.90804 0.95265 0.94470 0.92524 0.92028 0.91946 0.90805 0.88718 0.89589 0.86819 0.89137 0.85158 0.85557 0.85987 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 7.54 59.85 0.45 1.24 16 2 N -0.59 -12.54 2.47 -182.95 -0.45 -12.99 16 3 C 0.21 5.32 4.21 -5.19 -0.02 5.30 16 4 C -0.53 -15.21 9.94 -34.43 -0.34 -15.55 16 5 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 6 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 7 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 8 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 9 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 12 C 0.52 10.76 5.92 -10.98 -0.07 10.69 16 13 O -0.54 -13.13 15.77 5.56 0.09 -13.04 16 14 C -0.04 -0.60 0.60 -156.74 -0.09 -0.69 16 15 C -0.12 -1.66 7.62 37.16 0.28 -1.38 16 16 C -0.14 -2.00 4.93 -26.48 -0.13 -2.13 16 17 C 0.04 0.61 6.41 37.37 0.24 0.85 16 18 O -0.32 -4.62 9.79 -19.25 -0.19 -4.80 16 19 C 0.15 2.08 3.73 -39.19 -0.15 1.93 16 20 C -0.16 -1.90 9.56 -39.34 -0.38 -2.27 16 21 C -0.09 -0.89 9.88 -39.66 -0.39 -1.28 16 22 C -0.16 -1.71 9.64 -39.61 -0.38 -2.09 16 23 C -0.08 -1.07 7.76 -39.53 -0.31 -1.38 16 24 C -0.14 -2.03 2.57 -104.44 -0.27 -2.30 16 25 H 0.07 1.10 3.69 -51.93 -0.19 0.91 16 26 H 0.07 1.27 7.84 -51.93 -0.41 0.86 16 27 H 0.07 1.27 1.85 -52.03 -0.10 1.17 16 28 H 0.03 0.71 7.02 -51.93 -0.36 0.34 16 29 H 0.04 0.99 6.80 -51.93 -0.35 0.63 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.06 0.81 6.52 -51.93 -0.34 0.47 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.05 7.85 -51.93 -0.41 0.65 16 34 H 0.09 1.41 8.09 -51.93 -0.42 0.99 16 35 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 36 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.09 1.64 5.33 -51.93 -0.28 1.36 16 38 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.12 1.53 6.46 -52.49 -0.34 1.19 16 LS Contribution 312.36 15.07 4.71 4.71 Total: -1.00 -33.22 312.36 -6.71 -39.93 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.32 Total: 2.87 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -1.65 Total: -7.01 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.32 Total: -39.71 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.10 Total: -17.84 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.22 -6.71 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930594413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.307 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds