Wall clock time and date at job start Tue Mar 31 2020 07:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46490 * 120.00352 * 2 1 4 4 C 1.50708 * 109.47134 * 270.00183 * 3 2 1 5 5 H 1.07995 * 119.99804 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99877 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99373 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00049 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47481 * 89.99770 * 8 6 4 10 10 H 1.48506 * 109.46888 * 210.00159 * 8 6 4 11 11 H 1.48499 * 109.47072 * 329.99329 * 8 6 4 12 12 C 1.34776 * 119.99688 * 180.02562 * 2 1 3 13 13 O 1.21282 * 120.00357 * 183.82277 * 12 2 1 14 14 C 1.50707 * 120.00259 * 3.82248 * 12 2 1 15 15 C 1.52999 * 109.43671 * 212.09900 * 14 12 2 16 16 C 1.53074 * 109.43421 * 92.22813 * 14 12 2 17 17 C 1.53414 * 108.30156 * 288.13031 * 16 14 12 18 18 O 1.42828 * 108.37241 * 295.29243 * 17 16 14 19 19 C 1.35843 * 117.85819 * 49.20034 * 18 17 16 20 20 C 1.39152 * 118.49348 * 163.02276 * 19 18 17 21 21 C 1.37966 * 120.21368 * 179.60541 * 20 19 18 22 22 C 1.38290 * 119.95997 * 359.97438 * 21 20 19 23 23 C 1.38104 * 119.98354 * 0.07103 * 22 21 20 24 24 C 1.38368 * 121.80835 * 342.74229 * 19 18 17 25 25 H 1.09000 * 109.46934 * 245.27199 * 1 2 3 26 26 H 1.09001 * 109.46837 * 5.26470 * 1 2 3 27 27 H 1.08997 * 109.47809 * 125.26542 * 1 2 3 28 28 H 1.09001 * 109.47142 * 29.99830 * 3 2 1 29 29 H 1.09002 * 109.47332 * 150.00105 * 3 2 1 30 30 H 0.97005 * 119.99192 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46742 * 60.00009 * 15 14 12 32 32 H 1.08996 * 109.46697 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.46916 * 300.00040 * 15 14 12 34 34 H 1.08995 * 109.69786 * 47.82990 * 16 14 12 35 35 H 1.08992 * 109.69598 * 168.43045 * 16 14 12 36 36 H 1.08997 * 109.68403 * 175.56937 * 17 16 14 37 37 H 1.09001 * 109.71202 * 55.02759 * 17 16 14 38 38 H 1.08004 * 119.88933 * 359.56880 * 20 19 18 39 39 H 1.07998 * 120.02022 * 180.02562 * 21 20 19 40 40 H 1.07992 * 120.01149 * 180.08675 * 22 21 20 41 41 H 1.07995 * 119.84515 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3457 3.2572 -2.9128 8 14 3.7331 3.9291 -0.2530 9 1 5.1067 3.5079 0.1229 10 1 3.7480 5.3559 -0.6645 11 1 2.8272 3.7592 0.9113 12 6 2.1388 -1.1672 -0.0005 13 8 3.3496 -1.1686 0.0695 14 6 1.3878 -2.4709 -0.0881 15 6 2.1471 -3.5490 0.6877 16 6 1.2658 -2.8908 -1.5551 17 6 0.2608 -1.9569 -2.2415 18 8 -1.0226 -2.1633 -1.6495 19 6 -1.1056 -2.1508 -0.2937 20 6 -2.3569 -1.9895 0.2933 21 6 -2.4833 -1.9797 1.6671 22 6 -1.3637 -2.1310 2.4647 23 6 -0.1201 -2.2903 1.8856 24 6 0.0132 -2.2989 0.5069 25 1 -0.3633 -0.4299 0.9334 26 1 -0.3633 1.0234 -0.0943 27 1 -0.3634 -0.5933 -0.8390 28 1 1.6085 2.0283 0.5138 29 1 3.1500 1.1382 0.5138 30 1 3.8219 4.0835 -3.0900 31 1 2.2363 -3.2502 1.7322 32 1 1.6041 -4.4920 0.6251 33 1 3.1416 -3.6727 0.2590 34 1 2.2369 -2.8078 -2.0429 35 1 0.9110 -3.9197 -1.6143 36 1 0.2150 -2.1857 -3.3063 37 1 0.5672 -0.9203 -2.1016 38 1 -3.2319 -1.8711 -0.3287 39 1 -3.4560 -1.8547 2.1194 40 1 -1.4618 -2.1248 3.5401 41 1 0.7527 -2.4079 2.5106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930594413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:49 Heat of formation + Delta-G solvation = -20.194123 kcal Electronic energy + Delta-G solvation = -24773.525588 eV Core-core repulsion = 21426.805423 eV Total energy + Delta-G solvation = -3346.720165 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.32513 -40.19440 -38.61009 -36.87877 -36.20630 -34.67290 -31.89644 -31.23152 -30.65204 -29.62923 -27.54866 -25.72788 -25.08216 -24.01243 -22.89905 -22.03840 -19.63063 -19.20786 -18.96407 -18.10515 -17.49536 -17.30701 -17.12823 -16.41500 -15.84063 -15.58649 -15.12231 -15.05565 -14.93855 -14.54061 -14.42552 -14.30396 -14.15810 -13.73597 -13.46331 -13.16355 -13.02252 -12.91710 -12.69896 -12.62006 -12.56384 -12.32915 -12.08097 -11.95919 -11.80526 -11.68092 -11.40128 -10.87487 -10.82687 -9.65771 -9.41527 -8.93295 -8.38438 -6.43824 0.31941 0.48269 1.28924 1.32413 1.41110 1.63011 2.19716 2.24656 2.26867 2.76387 2.95493 3.37009 3.47514 3.56050 3.75535 3.77493 4.14420 4.17273 4.27679 4.30308 4.41341 4.42434 4.49742 4.53697 4.59956 4.67781 4.73866 4.77248 4.78479 4.85480 4.89995 4.95911 5.09714 5.14837 5.37548 5.38768 5.51188 5.54057 5.64052 5.87280 6.17619 6.38452 6.55265 6.56990 7.14468 7.29126 8.78051 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.005973 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.641921 B = 4686.432952 C = 4813.562214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.593 5.593 3 C 0.221 3.779 4 C -0.538 4.538 5 H 0.032 0.968 6 C 0.015 3.985 7 N -0.940 5.940 8 Si 0.945 3.055 9 H -0.274 1.274 10 H -0.272 1.272 11 H -0.243 1.243 12 C 0.513 3.487 13 O -0.586 6.586 14 C -0.032 4.032 15 C -0.118 4.118 16 C -0.138 4.138 17 C 0.045 3.955 18 O -0.318 6.318 19 C 0.125 3.875 20 C -0.161 4.161 21 C -0.074 4.074 22 C -0.149 4.149 23 C -0.094 4.094 24 C -0.159 4.159 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.021 0.979 30 H 0.269 0.731 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.050 0.950 38 H 0.145 0.855 39 H 0.162 0.838 40 H 0.150 0.850 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.505 -13.834 10.402 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.323 5.323 3 C 0.099 3.901 4 C -0.576 4.576 5 H 0.050 0.950 6 C -0.183 4.183 7 N -0.580 5.580 8 Si 0.768 3.232 9 H -0.200 1.200 10 H -0.197 1.197 11 H -0.166 1.166 12 C 0.301 3.699 13 O -0.467 6.467 14 C -0.035 4.035 15 C -0.176 4.176 16 C -0.176 4.176 17 C -0.030 4.030 18 O -0.233 6.233 19 C 0.081 3.919 20 C -0.179 4.179 21 C -0.092 4.092 22 C -0.167 4.167 23 C -0.112 4.112 24 C -0.160 4.160 25 H 0.111 0.889 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.135 0.865 36 H 0.152 0.848 37 H 0.068 0.932 38 H 0.163 0.837 39 H 0.180 0.820 40 H 0.168 0.832 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.971 -13.689 10.195 21.438 hybrid contribution 1.159 1.023 -0.241 1.564 sum -11.813 -12.666 9.954 19.976 Atomic orbital electron populations 1.23503 0.79153 1.03391 1.03499 1.47871 1.07468 1.06057 1.70890 1.19423 0.92670 0.82258 0.95768 1.21497 1.37057 1.07023 0.92037 0.94990 1.25799 0.95186 0.98782 0.98581 1.70035 1.42474 1.24438 1.21074 0.85755 0.79590 0.78011 0.79888 1.19960 1.19689 1.16604 1.21019 0.87370 0.85950 0.75555 1.90614 1.15963 1.87793 1.52297 1.19683 0.92787 0.92947 0.98076 1.21694 0.99746 0.96683 0.99447 1.22250 1.00958 1.01770 0.92583 1.23225 0.81396 0.99124 0.99251 1.86037 1.32395 1.87069 1.17760 1.18764 0.94418 0.96445 0.82287 1.20866 0.95079 1.05931 0.96037 1.21317 1.00177 0.95938 0.91771 1.21311 0.91520 1.02486 1.01424 1.21071 0.99151 0.98357 0.92619 1.19473 0.92691 1.08598 0.95237 0.88945 0.92077 0.89863 0.93771 0.96070 0.92152 0.91787 0.88981 0.92245 0.90223 0.86527 0.84802 0.93181 0.83702 0.82039 0.83196 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.63 7.54 127.77 0.96 2.59 16 2 N -0.59 -25.93 2.47 -851.13 -2.10 -28.03 16 3 C 0.22 11.27 4.21 85.64 0.36 11.63 16 4 C -0.54 -32.18 9.94 25.60 0.25 -31.93 16 5 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 6 C 0.02 0.90 5.47 84.66 0.46 1.36 16 7 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 8 Si 0.94 45.09 27.47 68.60 1.88 46.97 16 9 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.24 -10.57 6.54 99.48 0.65 -9.92 16 12 C 0.51 21.83 5.92 87.66 0.52 22.35 16 13 O -0.59 -29.93 15.77 -3.04 -0.05 -29.98 16 14 C -0.03 -0.99 0.60 -53.63 -0.03 -1.02 16 15 C -0.12 -3.10 7.62 71.98 0.55 -2.55 16 16 C -0.14 -3.94 4.93 30.76 0.15 -3.79 16 17 C 0.04 1.34 6.41 72.12 0.46 1.80 16 18 O -0.32 -8.98 9.79 -91.79 -0.90 -9.88 16 19 C 0.13 3.27 3.73 22.52 0.08 3.35 16 20 C -0.16 -3.29 9.56 22.42 0.21 -3.08 16 21 C -0.07 -1.20 9.88 22.22 0.22 -0.98 16 22 C -0.15 -2.62 9.64 22.25 0.21 -2.40 16 23 C -0.09 -2.16 7.76 22.30 0.17 -1.98 16 24 C -0.16 -4.28 2.57 -19.75 -0.05 -4.33 16 25 H 0.09 2.82 3.69 -2.39 -0.01 2.82 16 26 H 0.06 2.22 7.84 -2.39 -0.02 2.20 16 27 H 0.08 2.86 1.85 -2.48 0.00 2.86 16 28 H 0.04 2.11 7.02 -2.39 -0.02 2.09 16 29 H 0.02 1.15 6.80 -2.39 -0.02 1.13 16 30 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 31 H 0.06 1.62 6.52 -2.39 -0.02 1.60 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.71 7.85 -2.39 -0.02 1.69 16 34 H 0.08 2.48 8.09 -2.39 -0.02 2.46 16 35 H 0.12 2.61 8.10 -2.39 -0.02 2.59 16 36 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 37 H 0.05 1.92 5.33 -2.39 -0.01 1.91 16 38 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 41 H 0.13 2.81 6.46 -2.91 -0.02 2.79 16 Total: -1.00 -75.56 312.36 4.68 -70.89 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.99 Total: 18.27 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 4.55 Total: -8.98 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -1.80 Total: -87.28 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -0.95 Total: -39.86 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -75.56 4.68 -70.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930594413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.692 kcal (2) G-P(sol) polarization free energy of solvation -75.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds