Wall clock time and date at job start Tue Mar 31 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35893 * 116.99718 * 2 1 4 4 C 1.38754 * 120.05765 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94327 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05797 * 0.02562 * 5 4 3 7 7 C 1.50691 * 119.94344 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47746 * 265.00383 * 7 6 5 9 9 O 1.21296 * 119.99907 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00614 * 179.97438 * 8 7 6 11 11 C 1.37095 * 120.00517 * 180.02562 * 10 8 7 12 12 H 1.07993 * 120.00388 * 224.47915 * 11 10 8 13 13 C 1.38952 * 119.99808 * 44.47688 * 11 10 8 14 14 N 1.31414 * 119.99847 * 18.00484 * 13 11 10 15 15 Si 1.86801 * 120.00369 * 198.00140 * 13 11 10 16 16 H 1.48504 * 109.46803 * 60.00033 * 15 13 11 17 17 H 1.48491 * 109.47584 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46716 * 300.00336 * 15 13 11 19 19 C 1.46504 * 119.99453 * 0.02562 * 10 8 7 20 20 C 1.53005 * 117.49652 * 183.20113 * 19 10 8 21 21 C 1.53006 * 117.49478 * 114.54476 * 19 10 8 22 22 C 1.38237 * 120.10976 * 0.02562 * 6 5 4 23 23 C 1.50698 * 119.97353 * 179.97438 * 22 6 5 24 24 C 1.38176 * 120.05725 * 359.67720 * 22 6 5 25 25 H 1.09004 * 109.46739 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47306 * 300.00289 * 1 2 3 27 27 H 1.08997 * 109.47186 * 60.00946 * 1 2 3 28 28 H 1.07997 * 120.02618 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.97069 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.47308 * 25.01256 * 7 6 5 31 31 H 1.09001 * 109.47277 * 145.00254 * 7 6 5 32 32 H 0.97009 * 119.99996 * 174.95710 * 14 13 11 33 33 H 1.08997 * 115.55311 * 328.87942 * 19 10 8 34 34 H 1.09002 * 117.49301 * 0.02562 * 20 19 10 35 35 H 1.08995 * 117.49594 * 145.02219 * 20 19 10 36 36 H 1.08994 * 117.49699 * 214.97424 * 21 19 10 37 37 H 1.08998 * 117.49614 * 359.97438 * 21 19 10 38 38 H 1.08998 * 109.47007 * 90.00011 * 23 22 6 39 39 H 1.08997 * 109.47645 * 209.99895 * 23 22 6 40 40 H 1.09003 * 109.47190 * 330.00365 * 23 22 6 41 41 H 1.07998 * 120.02538 * 180.29830 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9859 5.0185 -0.0028 8 6 4.3238 5.4091 -1.4185 9 8 4.0368 4.6700 -2.3364 10 7 4.9439 6.5801 -1.6649 11 6 5.2507 6.9357 -2.9529 12 1 6.2216 7.3492 -3.1822 13 6 4.3125 6.7639 -3.9633 14 7 3.0434 6.6051 -3.6614 15 14 4.8550 6.7588 -5.7508 16 1 5.8249 5.6559 -5.9705 17 1 3.6724 6.5605 -6.6265 18 1 5.4993 8.0566 -6.0761 19 6 5.2900 7.4731 -0.5562 20 6 5.9246 8.8206 -0.9062 21 6 6.7756 7.7130 -0.2798 22 6 4.0559 2.5172 -0.0021 23 6 5.5607 2.5982 -0.0033 24 6 3.4311 1.2848 0.0046 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 0.2128 2.3203 -0.0005 29 1 1.3339 4.5113 -0.0011 30 1 3.3212 5.7654 0.4315 31 1 4.9012 4.9605 0.5864 32 1 2.3792 6.5586 -4.3669 33 1 4.6174 7.4410 0.3009 34 1 6.0842 9.0428 -1.9613 35 1 5.6698 9.6749 -0.2791 36 1 7.0802 7.8393 0.7591 37 1 7.4953 7.2062 -0.9225 38 1 5.9243 2.6178 1.0241 39 1 5.9711 1.7291 -0.5174 40 1 5.8753 3.5065 -0.5174 41 1 4.0207 0.3800 0.0090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930616667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:09 Heat of formation + Delta-G solvation = -10.467063 kcal Electronic energy + Delta-G solvation = -23321.913626 eV Core-core repulsion = 19975.615258 eV Total energy + Delta-G solvation = -3346.298368 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.96377 -38.64891 -37.42149 -35.86469 -32.85523 -32.19422 -31.59162 -30.71119 -28.33800 -26.41113 -26.23217 -24.39841 -21.91512 -21.67679 -21.15983 -20.48980 -19.01097 -17.45597 -16.39249 -16.16639 -15.97565 -15.56108 -15.11142 -14.62728 -14.25334 -14.04118 -13.81074 -13.48499 -13.29136 -13.01908 -12.82208 -12.65422 -11.99149 -11.93472 -11.68021 -11.64144 -11.42387 -11.09617 -10.89512 -10.81566 -10.75949 -10.54460 -10.50485 -10.34065 -10.14585 -9.93406 -9.70861 -8.66691 -8.36357 -8.00352 -7.58135 -6.96401 -6.06863 -3.82234 1.75139 1.86446 3.32271 3.39633 3.43067 3.45974 4.09009 4.19492 4.33213 4.80412 4.93415 5.03709 5.17302 5.18919 5.26311 5.33260 5.37149 5.47739 5.59373 5.63517 5.70124 5.73094 5.79619 5.80572 5.98126 6.04843 6.11479 6.21597 6.23633 6.24105 6.35620 6.47335 6.57331 6.68050 6.76167 6.83396 6.95413 7.13266 7.19235 7.65329 7.68937 8.32317 9.11966 9.23005 9.72012 10.37154 11.02212 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.005142 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.724553 B = 5444.499617 C = 6310.818878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.323 6.323 3 C 0.114 3.886 4 C -0.212 4.212 5 C -0.063 4.063 6 C -0.076 4.076 7 C -0.098 4.098 8 C 0.488 3.512 9 O -0.522 6.522 10 N -0.432 5.432 11 C -0.349 4.349 12 H 0.075 0.925 13 C 0.075 3.925 14 N -0.834 5.834 15 Si 0.911 3.089 16 H -0.274 1.274 17 H -0.287 1.287 18 H -0.279 1.279 19 C 0.076 3.924 20 C -0.174 4.174 21 C -0.208 4.208 22 C -0.033 4.033 23 C -0.115 4.115 24 C -0.154 4.154 25 H 0.094 0.906 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.263 0.737 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.201 -5.410 10.621 11.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.070 3.930 4 C -0.231 4.231 5 C -0.081 4.081 6 C -0.076 4.076 7 C -0.138 4.138 8 C 0.275 3.725 9 O -0.398 6.398 10 N -0.153 5.153 11 C -0.475 4.475 12 H 0.093 0.907 13 C -0.136 4.136 14 N -0.467 5.467 15 Si 0.738 3.262 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.031 4.031 20 C -0.212 4.212 21 C -0.248 4.248 22 C -0.033 4.033 23 C -0.171 4.171 24 C -0.173 4.173 25 H 0.112 0.888 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.481 -6.103 10.034 11.837 hybrid contribution -0.264 0.369 -0.927 1.032 sum -1.746 -5.734 9.107 10.903 Atomic orbital electron populations 1.22967 0.79033 1.03262 1.01291 1.86009 1.20897 1.27471 1.89349 1.18879 0.92224 0.83745 0.98138 1.21051 0.99394 0.92379 1.10249 1.20754 0.94014 0.96832 0.96534 1.19234 0.93103 0.94062 1.01224 1.20695 1.00544 0.94088 0.98500 1.19640 0.82373 0.81844 0.88637 1.90557 1.52485 1.51078 1.45681 1.42779 1.54923 1.13618 1.04025 1.18761 0.98971 1.47580 0.82217 0.90737 1.25215 0.94343 0.94577 0.99417 1.69811 1.00388 1.43026 1.33455 0.86304 0.78146 0.78294 0.83433 1.19989 1.21279 1.20438 1.21698 0.93119 0.94743 0.93506 1.23061 1.04164 0.91621 1.02368 1.23323 0.96290 1.04788 1.00358 1.19444 0.95906 0.91542 0.96387 1.20816 0.91056 1.03634 1.01622 1.20120 0.91110 0.97747 1.08285 0.88758 0.92952 0.92771 0.86108 0.86070 0.90175 0.89814 0.92671 0.88118 0.87536 0.89900 0.89857 0.89154 0.91431 0.91728 0.90478 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.88 10.50 -19.40 -0.20 -5.08 16 3 C 0.11 1.93 6.69 -39.22 -0.26 1.67 16 4 C -0.21 -3.53 9.04 -39.43 -0.36 -3.88 16 5 C -0.06 -1.16 9.67 -39.60 -0.38 -1.54 16 6 C -0.08 -1.45 4.37 -104.61 -0.46 -1.91 16 7 C -0.10 -1.89 3.77 -29.04 -0.11 -2.00 16 8 C 0.49 12.16 6.17 -10.99 -0.07 12.09 16 9 O -0.52 -15.28 13.80 5.54 0.08 -15.20 16 10 N -0.43 -10.65 2.83 -107.72 -0.31 -10.96 16 11 C -0.35 -9.47 7.91 -14.93 -0.12 -9.59 16 12 H 0.07 1.97 7.26 -52.49 -0.38 1.59 16 13 C 0.08 2.12 4.39 -17.47 -0.08 2.04 16 14 N -0.83 -24.79 11.74 55.50 0.65 -24.14 16 15 Si 0.91 22.19 29.59 -169.99 -5.03 17.16 16 16 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 C 0.08 1.49 5.87 -67.92 -0.40 1.09 16 20 C -0.17 -3.11 9.80 -26.69 -0.26 -3.37 16 21 C -0.21 -3.48 10.36 -26.69 -0.28 -3.76 16 22 C -0.03 -0.59 5.88 -104.65 -0.62 -1.20 16 23 C -0.11 -1.81 9.21 36.00 0.33 -1.48 16 24 C -0.15 -2.64 9.64 -39.43 -0.38 -3.02 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 27 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 28 H 0.12 1.68 6.30 -52.49 -0.33 1.35 16 29 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 30 H 0.08 1.43 7.47 -51.93 -0.39 1.04 16 31 H 0.08 1.41 6.95 -51.93 -0.36 1.05 16 32 H 0.26 7.57 8.32 -40.82 -0.34 7.23 16 33 H 0.10 1.76 6.96 -51.93 -0.36 1.40 16 34 H 0.11 2.12 6.73 -51.93 -0.35 1.77 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 40 H 0.08 1.39 6.15 -51.93 -0.32 1.07 16 41 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -33.80 338.76 -7.95 -41.75 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.80 Total: 4.93 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -2.44 Total: -13.56 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.35 Total: -35.10 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.13 Total: -20.29 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.80 -7.95 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.283 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds