Wall clock time and date at job start Tue Mar 31 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35893 * 116.99718 * 2 1 4 4 C 1.38754 * 120.05765 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94327 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05797 * 0.02562 * 5 4 3 7 7 C 1.50691 * 119.94344 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47746 * 265.00383 * 7 6 5 9 9 O 1.21296 * 119.99907 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00614 * 179.97438 * 8 7 6 11 11 C 1.37095 * 120.00517 * 180.02562 * 10 8 7 12 12 H 1.07993 * 120.00388 * 224.47915 * 11 10 8 13 13 C 1.38952 * 119.99808 * 44.47688 * 11 10 8 14 14 N 1.31414 * 119.99847 * 18.00484 * 13 11 10 15 15 Si 1.86801 * 120.00369 * 198.00140 * 13 11 10 16 16 H 1.48504 * 109.46803 * 60.00033 * 15 13 11 17 17 H 1.48491 * 109.47584 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46716 * 300.00336 * 15 13 11 19 19 C 1.46504 * 119.99453 * 0.02562 * 10 8 7 20 20 C 1.53005 * 117.49652 * 183.20113 * 19 10 8 21 21 C 1.53006 * 117.49478 * 114.54476 * 19 10 8 22 22 C 1.38237 * 120.10976 * 0.02562 * 6 5 4 23 23 C 1.50698 * 119.97353 * 179.97438 * 22 6 5 24 24 C 1.38176 * 120.05725 * 359.67720 * 22 6 5 25 25 H 1.09004 * 109.46739 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47306 * 300.00289 * 1 2 3 27 27 H 1.08997 * 109.47186 * 60.00946 * 1 2 3 28 28 H 1.07997 * 120.02618 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.97069 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.47308 * 25.01256 * 7 6 5 31 31 H 1.09001 * 109.47277 * 145.00254 * 7 6 5 32 32 H 0.97009 * 119.99996 * 174.95710 * 14 13 11 33 33 H 1.08997 * 115.55311 * 328.87942 * 19 10 8 34 34 H 1.09002 * 117.49301 * 0.02562 * 20 19 10 35 35 H 1.08995 * 117.49594 * 145.02219 * 20 19 10 36 36 H 1.08994 * 117.49699 * 214.97424 * 21 19 10 37 37 H 1.08998 * 117.49614 * 359.97438 * 21 19 10 38 38 H 1.08998 * 109.47007 * 90.00011 * 23 22 6 39 39 H 1.08997 * 109.47645 * 209.99895 * 23 22 6 40 40 H 1.09003 * 109.47190 * 330.00365 * 23 22 6 41 41 H 1.07998 * 120.02538 * 180.29830 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9859 5.0185 -0.0028 8 6 4.3238 5.4091 -1.4185 9 8 4.0368 4.6700 -2.3364 10 7 4.9439 6.5801 -1.6649 11 6 5.2507 6.9357 -2.9529 12 1 6.2216 7.3492 -3.1822 13 6 4.3125 6.7639 -3.9633 14 7 3.0434 6.6051 -3.6614 15 14 4.8550 6.7588 -5.7508 16 1 5.8249 5.6559 -5.9705 17 1 3.6724 6.5605 -6.6265 18 1 5.4993 8.0566 -6.0761 19 6 5.2900 7.4731 -0.5562 20 6 5.9246 8.8206 -0.9062 21 6 6.7756 7.7130 -0.2798 22 6 4.0559 2.5172 -0.0021 23 6 5.5607 2.5982 -0.0033 24 6 3.4311 1.2848 0.0046 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 0.2128 2.3203 -0.0005 29 1 1.3339 4.5113 -0.0011 30 1 3.3212 5.7654 0.4315 31 1 4.9012 4.9605 0.5864 32 1 2.3792 6.5586 -4.3669 33 1 4.6174 7.4410 0.3009 34 1 6.0842 9.0428 -1.9613 35 1 5.6698 9.6749 -0.2791 36 1 7.0802 7.8393 0.7591 37 1 7.4953 7.2062 -0.9225 38 1 5.9243 2.6178 1.0241 39 1 5.9711 1.7291 -0.5174 40 1 5.8753 3.5065 -0.5174 41 1 4.0207 0.3800 0.0090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930616667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:08 Heat of formation + Delta-G solvation = -30.506748 kcal Electronic energy + Delta-G solvation = -23322.782612 eV Core-core repulsion = 19975.615258 eV Total energy + Delta-G solvation = -3347.167354 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.26930 -40.28144 -38.74548 -37.52397 -34.77667 -33.53563 -33.13612 -32.49588 -29.58842 -27.84698 -27.42532 -26.19341 -23.33600 -23.05370 -22.73225 -21.89931 -20.73602 -18.64683 -18.21496 -17.76237 -17.40294 -16.80458 -16.60931 -16.37846 -15.71769 -15.62544 -15.28204 -14.96410 -14.64416 -14.46680 -14.16657 -14.14298 -13.65775 -13.18704 -13.06228 -13.02372 -12.85943 -12.77309 -12.72450 -12.40493 -12.19020 -12.14794 -12.07164 -11.73850 -11.64984 -11.59016 -11.16528 -10.68432 -9.89647 -9.67190 -8.97885 -8.86113 -8.16597 -5.93853 0.43200 0.50930 1.35004 1.43770 1.46491 2.28784 2.38855 2.48394 2.75512 3.15469 3.26122 3.41883 3.86132 3.89325 4.03196 4.17468 4.21976 4.27616 4.34341 4.38177 4.38550 4.45017 4.46313 4.60332 4.66755 4.69939 4.77697 4.83460 4.89067 4.93804 5.07032 5.09762 5.23340 5.34023 5.38446 5.48389 5.50050 5.53618 5.80264 5.87678 6.24443 6.48893 7.09377 7.28931 7.77595 8.46175 8.91677 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.005142 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.724553 B = 5444.499617 C = 6310.818878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.113 3.887 4 C -0.216 4.216 5 C -0.080 4.080 6 C -0.103 4.103 7 C -0.081 4.081 8 C 0.478 3.522 9 O -0.577 6.577 10 N -0.448 5.448 11 C -0.353 4.353 12 H 0.074 0.926 13 C 0.024 3.976 14 N -0.871 5.871 15 Si 0.964 3.036 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.256 1.256 19 C 0.045 3.955 20 C -0.173 4.173 21 C -0.179 4.179 22 C -0.043 4.043 23 C -0.110 4.110 24 C -0.167 4.167 25 H 0.124 0.876 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.145 0.855 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.256 0.744 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 -5.560 12.391 13.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.068 3.932 4 C -0.235 4.235 5 C -0.098 4.098 6 C -0.104 4.104 7 C -0.121 4.121 8 C 0.267 3.733 9 O -0.458 6.458 10 N -0.170 5.170 11 C -0.481 4.481 12 H 0.092 0.908 13 C -0.182 4.182 14 N -0.506 5.506 15 Si 0.790 3.210 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.180 1.180 19 C -0.060 4.060 20 C -0.211 4.211 21 C -0.217 4.217 22 C -0.044 4.044 23 C -0.167 4.167 24 C -0.185 4.185 25 H 0.142 0.858 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.163 0.837 29 H 0.139 0.861 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.066 0.934 33 H 0.143 0.857 34 H 0.097 0.903 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.934 -6.211 11.831 13.395 hybrid contribution -0.413 0.364 -1.413 1.516 sum -1.347 -5.846 10.419 12.023 Atomic orbital electron populations 1.23314 0.76723 1.05524 1.01957 1.86003 1.23287 1.26505 1.88975 1.19045 0.92475 0.84486 0.97196 1.21295 1.00737 0.91762 1.09659 1.20938 0.94114 0.97671 0.97086 1.19374 0.93675 0.94322 1.02989 1.20541 1.01947 0.94638 0.94979 1.20526 0.81151 0.81246 0.90368 1.90507 1.54626 1.52738 1.47898 1.43013 1.54762 1.14624 1.04556 1.18994 0.98729 1.46378 0.83976 0.90791 1.25972 0.94424 0.94734 1.03045 1.69928 1.01254 1.45526 1.33897 0.85467 0.77393 0.78804 0.79379 1.20942 1.21589 1.18046 1.22023 0.95749 0.95333 0.92933 1.23109 1.04055 0.92281 1.01649 1.23330 0.93667 1.02533 1.02210 1.19726 0.96988 0.91588 0.96049 1.20810 0.89886 1.02622 1.03335 1.20388 0.91750 0.98115 1.08256 0.85830 0.91506 0.92818 0.83711 0.86059 0.88946 0.87294 0.93448 0.85708 0.90296 0.86599 0.85666 0.90797 0.88279 0.90870 0.93091 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -9.53 10.50 -92.34 -0.97 -10.50 16 3 C 0.11 3.71 6.69 22.51 0.15 3.86 16 4 C -0.22 -7.04 9.04 22.37 0.20 -6.83 16 5 C -0.08 -2.94 9.67 22.26 0.22 -2.72 16 6 C -0.10 -3.95 4.37 -19.85 -0.09 -4.03 16 7 C -0.08 -3.09 3.77 29.10 0.11 -2.98 16 8 C 0.48 24.19 6.17 87.65 0.54 24.73 16 9 O -0.58 -35.00 13.80 -3.08 -0.04 -35.04 16 10 N -0.45 -22.28 2.83 -613.11 -1.74 -24.01 16 11 C -0.35 -19.56 7.91 84.04 0.67 -18.89 16 12 H 0.07 3.98 7.26 -2.91 -0.02 3.96 16 13 C 0.02 1.40 4.39 84.93 0.37 1.78 16 14 N -0.87 -53.55 11.74 21.66 0.25 -53.29 16 15 Si 0.96 46.61 29.59 68.60 2.03 48.64 16 16 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 17 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 18 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 19 C 0.04 1.68 5.87 44.99 0.26 1.95 16 20 C -0.17 -5.84 9.80 30.62 0.30 -5.54 16 21 C -0.18 -5.47 10.36 30.62 0.32 -5.15 16 22 C -0.04 -1.54 5.88 -19.88 -0.12 -1.66 16 23 C -0.11 -3.37 9.21 71.24 0.66 -2.72 16 24 C -0.17 -5.58 9.64 22.37 0.22 -5.36 16 25 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 27 H 0.05 1.04 7.66 -2.39 -0.02 1.02 16 28 H 0.15 3.83 6.30 -2.91 -0.02 3.81 16 29 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 30 H 0.09 3.23 7.47 -2.38 -0.02 3.21 16 31 H 0.11 3.50 6.95 -2.39 -0.02 3.49 16 32 H 0.26 15.36 8.32 -92.70 -0.77 14.59 16 33 H 0.13 4.05 6.96 -2.39 -0.02 4.03 16 34 H 0.08 3.11 6.73 -2.39 -0.02 3.10 16 35 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.07 2.06 8.09 -2.39 -0.02 2.04 16 40 H 0.05 1.82 6.15 -2.39 -0.01 1.81 16 41 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -76.15 338.76 5.48 -70.66 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 1.03 Total: 25.63 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 4.92 Total: -22.10 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -1.48 Total: -77.31 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -1.01 Total: -45.53 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -76.15 5.48 -70.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.155 kcal (2) G-P(sol) polarization free energy of solvation -76.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds