Wall clock time and date at job start Tue Mar 31 2020 07:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.43272 * 2 1 4 4 O 1.21286 * 120.00330 * 5.07068 * 3 2 1 5 5 N 1.34775 * 119.99859 * 184.78822 * 3 2 1 6 6 C 1.46507 * 119.99964 * 175.05999 * 5 3 2 7 7 C 1.53004 * 109.46947 * 180.02562 * 6 5 3 8 8 C 1.50704 * 109.46775 * 180.02562 * 7 6 5 9 9 H 1.07995 * 119.99763 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99524 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00438 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99765 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47476 * 89.99559 * 12 10 8 14 14 H 1.48499 * 109.47194 * 209.99699 * 12 10 8 15 15 H 1.48501 * 109.47023 * 329.99459 * 12 10 8 16 16 C 1.53068 * 109.43692 * 240.09012 * 2 1 3 17 17 C 1.53409 * 108.29011 * 288.16424 * 16 2 1 18 18 O 1.42834 * 108.37094 * 295.25545 * 17 16 2 19 19 C 1.35842 * 117.86109 * 49.15268 * 18 17 16 20 20 C 1.39143 * 118.49879 * 162.97651 * 19 18 17 21 21 C 1.37976 * 120.21627 * 179.81414 * 20 19 18 22 22 C 1.38285 * 119.95629 * 359.97438 * 21 20 19 23 23 C 1.38109 * 119.98478 * 0.07979 * 22 21 20 24 24 C 1.38371 * 121.80451 * 342.91750 * 19 18 17 25 25 H 1.09000 * 109.47585 * 60.00314 * 1 2 3 26 26 H 1.09002 * 109.47182 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47600 * 299.99929 * 1 2 3 28 28 H 0.97002 * 120.00065 * 355.06332 * 5 3 2 29 29 H 1.08993 * 109.47100 * 300.00193 * 6 5 3 30 30 H 1.08998 * 109.46621 * 60.00293 * 6 5 3 31 31 H 1.08998 * 109.46880 * 300.00205 * 7 6 5 32 32 H 1.08996 * 109.47056 * 60.00125 * 7 6 5 33 33 H 0.97000 * 119.99986 * 180.02562 * 11 10 8 34 34 H 1.08993 * 109.70537 * 47.86531 * 16 2 1 35 35 H 1.09003 * 109.69946 * 168.42666 * 16 2 1 36 36 H 1.08996 * 109.68704 * 54.97571 * 17 16 2 37 37 H 1.09003 * 109.68900 * 175.49684 * 17 16 2 38 38 H 1.07999 * 119.89087 * 359.84149 * 20 19 18 39 39 H 1.07998 * 120.01703 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.00749 * 180.09765 * 22 21 20 41 41 H 1.08000 * 119.84423 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0313 1.4212 0.0000 4 8 1.2465 2.3412 0.0928 5 7 3.3524 1.6696 -0.0974 6 6 3.8321 3.0497 -0.2065 7 6 5.3591 3.0526 -0.3035 8 6 5.8525 4.4722 -0.4151 9 1 5.1475 5.2903 -0.4171 10 6 7.2039 4.7263 -0.5157 11 7 8.0623 3.7300 -0.5138 12 14 7.8157 6.4859 -0.6533 13 1 8.0669 7.0303 0.7053 14 1 9.0762 6.5118 -1.4378 15 1 6.7902 7.3144 -1.3368 16 6 2.0393 -0.7198 -1.2512 17 6 1.7713 -2.2212 -1.0856 18 8 2.5551 -2.7004 0.0081 19 6 2.5085 -2.0061 1.1748 20 6 2.9574 -2.6279 2.3358 21 6 2.9296 -1.9542 3.5396 22 6 2.4547 -0.6566 3.5939 23 6 2.0072 -0.0367 2.4437 24 6 2.0308 -0.7087 1.2328 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.9856 0.9348 -0.0954 29 1 3.4108 3.5112 -1.0995 30 1 3.5225 3.6125 0.6741 31 1 5.7807 2.5908 0.5892 32 1 5.6682 2.4898 -1.1843 33 1 9.0131 3.9088 -0.5842 34 1 1.5125 -0.3472 -2.1296 35 1 3.1097 -0.5472 -1.3642 36 1 0.7137 -2.3848 -0.8788 37 1 2.0526 -2.7472 -1.9979 38 1 3.3293 -3.6410 2.2944 39 1 3.2793 -2.4398 4.4386 40 1 2.4340 -0.1280 4.5354 41 1 1.6364 0.9766 2.4888 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935338657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:52 Heat of formation + Delta-G solvation = -66.646206 kcal Electronic energy + Delta-G solvation = -23240.764174 eV Core-core repulsion = 19892.029696 eV Total energy + Delta-G solvation = -3348.734478 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36671 -39.09269 -37.58542 -35.29902 -34.84297 -32.82196 -30.82924 -30.41071 -29.65948 -28.35131 -25.67193 -24.31822 -23.62430 -22.70921 -21.07418 -20.67547 -19.03688 -18.08207 -17.15604 -16.45287 -16.34588 -16.13021 -15.23761 -15.04931 -14.76970 -14.50172 -14.22389 -14.01018 -13.69730 -13.51601 -13.28739 -12.96886 -12.52670 -12.31333 -12.23016 -12.04669 -11.90579 -11.54343 -11.21891 -11.15264 -11.03926 -10.82540 -10.71754 -10.63031 -10.33930 -9.78182 -9.47383 -9.22427 -8.85153 -8.54755 -8.36442 -8.24578 -6.09535 -4.12711 1.20796 1.36568 2.88095 3.14208 3.28990 3.35032 3.38609 3.54412 3.72281 4.38787 4.42600 4.45617 4.53343 4.75550 4.86076 5.00676 5.07515 5.13580 5.25075 5.27406 5.35621 5.36485 5.42049 5.63792 5.70911 5.73306 5.83099 5.95374 6.12766 6.21472 6.30915 6.32554 6.40084 6.48717 6.68482 6.71688 6.89717 7.31778 7.50919 7.60875 7.88081 7.98079 8.26600 8.59132 8.93209 9.52188 11.02027 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018873 B = 0.004024 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.234342 B = 6956.410843 C = 7304.910503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.037 4.037 3 C 0.522 3.478 4 O -0.546 6.546 5 N -0.716 5.716 6 C 0.122 3.878 7 C 0.013 3.987 8 C -0.522 4.522 9 H 0.059 0.941 10 C 0.060 3.940 11 N -0.894 5.894 12 Si 0.896 3.104 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.273 1.273 16 C -0.153 4.153 17 C 0.064 3.936 18 O -0.314 6.314 19 C 0.139 3.861 20 C -0.152 4.152 21 C -0.083 4.083 22 C -0.150 4.150 23 C -0.072 4.072 24 C -0.150 4.150 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.397 0.603 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.262 0.738 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.066 -15.272 2.979 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.040 4.040 3 C 0.306 3.694 4 O -0.424 6.424 5 N -0.365 5.365 6 C 0.000 4.000 7 C -0.024 4.024 8 C -0.560 4.560 9 H 0.077 0.923 10 C -0.142 4.142 11 N -0.532 5.532 12 Si 0.724 3.276 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.197 1.197 16 C -0.190 4.190 17 C -0.011 4.011 18 O -0.228 6.228 19 C 0.094 3.906 20 C -0.170 4.170 21 C -0.101 4.101 22 C -0.168 4.168 23 C -0.090 4.090 24 C -0.151 4.151 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.231 0.769 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.314 -14.783 2.953 20.113 hybrid contribution 0.747 0.840 -0.140 1.133 sum -12.567 -13.944 2.813 18.981 Atomic orbital electron populations 1.21724 0.91108 1.01450 1.03746 1.19706 0.97901 0.93008 0.93385 1.20069 0.82998 0.89725 0.76579 1.90673 1.55611 1.45933 1.50179 1.46323 1.06486 1.10986 1.72674 1.21743 0.98179 0.79540 1.00577 1.19317 0.87162 0.98167 0.97799 1.21037 0.92036 0.91975 1.50994 0.92278 1.24991 0.96869 0.97363 0.95002 1.69957 1.02225 1.30904 1.50147 0.86518 0.78277 0.84624 0.78178 1.20544 1.21154 1.19733 1.22376 1.03535 0.95569 0.97555 1.23018 0.95346 0.94133 0.88627 1.85995 1.65605 1.52009 1.19225 1.18640 0.96511 0.89652 0.85847 1.20561 1.05374 1.00926 0.90157 1.20948 0.97675 0.94503 0.97018 1.21026 1.01777 0.95526 0.98460 1.21003 0.96950 0.99576 0.91439 1.19437 1.06708 0.93852 0.95111 0.91425 0.92281 0.91354 0.76870 0.92588 0.92503 0.95945 0.96003 0.92831 0.88920 0.89515 0.91383 0.87092 0.85203 0.85389 0.85739 0.85741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 7.54 37.16 0.28 -1.17 16 2 C -0.04 -0.48 0.51 -156.75 -0.08 -0.56 16 3 C 0.52 8.90 5.21 -10.99 -0.06 8.84 16 4 O -0.55 -11.04 15.99 5.55 0.09 -10.95 16 5 N -0.72 -12.89 5.25 -60.29 -0.32 -13.21 16 6 C 0.12 2.62 5.62 -4.04 -0.02 2.59 16 7 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 8 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 9 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 12 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 C -0.15 -1.68 4.90 -26.48 -0.13 -1.81 16 17 C 0.06 0.59 6.96 37.37 0.26 0.85 16 18 O -0.31 -3.76 10.27 -19.25 -0.20 -3.96 16 19 C 0.14 1.77 6.47 -39.20 -0.25 1.51 16 20 C -0.15 -1.75 9.94 -39.34 -0.39 -2.14 16 21 C -0.08 -0.89 10.04 -39.66 -0.40 -1.29 16 22 C -0.15 -1.77 10.04 -39.61 -0.40 -2.17 16 23 C -0.07 -0.97 9.03 -39.53 -0.36 -1.33 16 24 C -0.15 -1.99 4.63 -104.44 -0.48 -2.48 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.57 6.65 -51.93 -0.35 0.22 16 27 H 0.07 0.87 8.02 -51.93 -0.42 0.46 16 28 H 0.40 6.70 7.64 -40.82 -0.31 6.39 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.09 1.04 7.11 -51.93 -0.37 0.67 16 36 H 0.07 0.55 6.56 -51.93 -0.34 0.21 16 37 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.12 1.82 7.36 -52.49 -0.39 1.43 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -31.85 336.72 -8.16 -40.01 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.94 Total: 4.39 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -2.58 Total: -12.23 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.42 Total: -38.75 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.11 Total: -14.91 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.85 -8.16 -40.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.640 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds