Wall clock time and date at job start Tue Mar 31 2020 07:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.43927 * 2 1 4 4 O 1.21278 * 119.99897 * 120.08297 * 3 2 1 5 5 N 1.34769 * 120.00027 * 300.09095 * 3 2 1 6 6 C 1.46506 * 120.00186 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47191 * 179.97438 * 6 5 3 8 8 C 1.50701 * 109.47031 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00038 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00106 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99908 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99979 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47276 * 59.99598 * 12 10 8 14 14 H 1.48507 * 109.47319 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47191 * 299.99440 * 12 10 8 16 16 C 1.53069 * 109.40252 * 119.89554 * 2 1 3 17 17 C 1.53410 * 108.30056 * 168.23365 * 16 2 1 18 18 O 1.42826 * 108.37734 * 295.28428 * 17 16 2 19 19 C 1.35845 * 117.85604 * 49.19041 * 18 17 16 20 20 C 1.39152 * 118.49859 * 162.93139 * 19 18 17 21 21 C 1.37967 * 120.21312 * 179.69647 * 20 19 18 22 22 C 1.38295 * 119.95823 * 0.02851 * 21 20 19 23 23 C 1.38101 * 119.98491 * 0.07602 * 22 21 20 24 24 C 1.38370 * 121.80666 * 342.77557 * 19 18 17 25 25 H 1.08999 * 109.47612 * 179.91444 * 1 2 3 26 26 H 1.09003 * 109.46978 * 299.91279 * 1 2 3 27 27 H 1.09000 * 109.47173 * 59.90857 * 1 2 3 28 28 H 0.97000 * 120.00313 * 359.97438 * 5 3 2 29 29 H 1.08990 * 109.47096 * 300.00136 * 6 5 3 30 30 H 1.09003 * 109.46903 * 59.99798 * 6 5 3 31 31 H 1.09004 * 109.47337 * 300.00195 * 7 6 5 32 32 H 1.09003 * 109.47061 * 60.00263 * 7 6 5 33 33 H 0.96998 * 120.00302 * 180.02562 * 11 10 8 34 34 H 1.08997 * 109.69719 * 287.93888 * 16 2 1 35 35 H 1.09003 * 109.69772 * 48.53303 * 16 2 1 36 36 H 1.08997 * 109.68148 * 55.00996 * 17 16 2 37 37 H 1.08997 * 109.68067 * 175.56127 * 17 16 2 38 38 H 1.07993 * 119.88811 * 359.71552 * 20 19 18 39 39 H 1.07993 * 120.02094 * 180.30413 * 21 20 19 40 40 H 1.08001 * 120.00579 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.84200 * 179.91356 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0315 1.4211 0.0000 4 8 2.7298 1.8177 0.9088 5 7 1.7040 2.2513 -1.0098 6 6 2.1911 3.6330 -1.0096 7 6 1.6794 4.3544 -2.2581 8 6 2.1810 5.7755 -2.2581 9 1 2.8029 6.1286 -1.4488 10 6 1.8460 6.6248 -3.2913 11 7 1.0892 6.1946 -4.2770 12 14 2.4672 8.3864 -3.2909 13 1 3.9522 8.3877 -3.2925 14 1 1.9707 9.0867 -4.5028 15 1 1.9728 9.0854 -2.0774 16 6 2.0385 -0.7196 1.2516 17 6 3.5434 -0.9675 1.0868 18 8 3.7347 -1.8660 -0.0067 19 6 3.0970 -1.5901 -1.1740 20 6 3.5350 -2.2200 -2.3349 21 6 2.9090 -1.9704 -3.5388 22 6 1.8428 -1.0912 -3.5935 23 6 1.4068 -0.4627 -2.4437 24 6 2.0317 -0.7090 -1.2324 25 1 -0.3634 -1.0276 -0.0015 26 1 -0.3633 0.5125 0.8908 27 1 -0.3633 0.5152 -0.8892 28 1 1.1457 1.9341 -1.7369 29 1 1.8284 4.1459 -0.1189 30 1 3.2811 3.6339 -1.0109 31 1 2.0425 3.8413 -3.1486 32 1 0.5894 4.3534 -2.2572 33 1 0.8538 6.7919 -5.0041 34 1 1.8624 -0.0982 2.1297 35 1 1.5196 -1.6715 1.3645 36 1 4.0503 -0.0248 0.8805 37 1 3.9449 -1.4086 1.9991 38 1 4.3676 -2.9066 -2.2933 39 1 3.2483 -2.4647 -4.4369 40 1 1.3519 -0.8956 -4.5354 41 1 0.5749 0.2245 -2.4894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935338658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:54 Heat of formation + Delta-G solvation = -66.099981 kcal Electronic energy + Delta-G solvation = -23345.643519 eV Core-core repulsion = 19996.932726 eV Total energy + Delta-G solvation = -3348.710792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36927 -38.98895 -37.56950 -35.28971 -34.90400 -32.86246 -30.79740 -30.32938 -29.63672 -28.62031 -25.24369 -24.37083 -23.63593 -22.32501 -21.38189 -20.84462 -19.21420 -17.88390 -17.23178 -16.55884 -16.31435 -15.64132 -15.24423 -15.00369 -14.94323 -14.50233 -14.21280 -14.06329 -13.57752 -13.45190 -13.27578 -12.88952 -12.53689 -12.32507 -12.29102 -12.11076 -11.84180 -11.70512 -11.23918 -11.08689 -11.03082 -10.72001 -10.66152 -10.43442 -10.33742 -9.86710 -9.54124 -9.29036 -8.79157 -8.56003 -8.37577 -8.19036 -6.10915 -4.13909 1.20371 1.39031 2.90105 3.25925 3.29966 3.33830 3.36409 3.51540 3.83864 4.33200 4.40169 4.49035 4.64141 4.73448 4.94855 5.04246 5.18145 5.25918 5.26126 5.34568 5.37345 5.39972 5.48492 5.62256 5.65865 5.86441 5.89155 5.93006 5.97795 6.24427 6.30228 6.31271 6.38358 6.48356 6.69978 6.72189 6.86964 7.40012 7.48255 7.58770 7.86482 7.94925 8.25128 8.56519 8.91485 9.50931 11.00647 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.004145 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.342028 B = 6753.914256 C = 7396.573295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.038 4.038 3 C 0.518 3.482 4 O -0.547 6.547 5 N -0.715 5.715 6 C 0.121 3.879 7 C 0.013 3.987 8 C -0.522 4.522 9 H 0.058 0.942 10 C 0.060 3.940 11 N -0.894 5.894 12 Si 0.897 3.103 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.276 1.276 16 C -0.133 4.133 17 C 0.058 3.942 18 O -0.319 6.319 19 C 0.141 3.859 20 C -0.152 4.152 21 C -0.084 4.084 22 C -0.149 4.149 23 C -0.079 4.079 24 C -0.152 4.152 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.395 0.605 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 -18.570 5.124 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.042 4.042 3 C 0.303 3.697 4 O -0.426 6.426 5 N -0.364 5.364 6 C -0.001 4.001 7 C -0.024 4.024 8 C -0.561 4.561 9 H 0.077 0.923 10 C -0.142 4.142 11 N -0.533 5.533 12 Si 0.724 3.276 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.201 1.201 16 C -0.171 4.171 17 C -0.017 4.017 18 O -0.233 6.233 19 C 0.096 3.904 20 C -0.171 4.171 21 C -0.102 4.102 22 C -0.167 4.167 23 C -0.097 4.097 24 C -0.153 4.153 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.230 0.770 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.109 -18.336 5.651 19.187 hybrid contribution -0.128 1.108 -0.458 1.206 sum -0.237 -17.227 5.193 17.994 Atomic orbital electron populations 1.21892 0.91282 1.03096 1.03153 1.19685 0.97722 0.92690 0.94057 1.20210 0.80519 0.86584 0.82372 1.90640 1.38488 1.77167 1.36322 1.46355 1.52348 1.13592 1.24118 1.21757 0.98589 0.78405 1.01382 1.19314 0.96864 0.95171 0.91052 1.20998 1.32027 0.95601 1.07486 0.92335 1.24982 0.94964 0.98883 0.95337 1.69938 1.36524 1.36194 1.10601 0.86577 0.79287 0.84258 0.77441 1.20111 1.21205 1.20105 1.22111 0.96371 1.01042 0.97587 1.23113 0.96361 0.94254 0.87962 1.85953 1.67543 1.50481 1.19314 1.18678 0.90837 0.94858 0.86029 1.20580 1.02471 1.03827 0.90214 1.20951 0.95190 0.97193 0.96868 1.21041 0.98489 0.98737 0.98405 1.20968 0.98950 0.98353 0.91418 1.19474 0.98577 1.02140 0.95087 0.91159 0.91384 0.91427 0.76985 0.92450 0.92580 0.95942 0.95986 0.92774 0.88674 0.90065 0.90242 0.87455 0.85293 0.85397 0.85490 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 7.89 37.16 0.29 -1.18 16 2 C -0.04 -0.51 0.54 -156.74 -0.09 -0.59 16 3 C 0.52 8.86 6.13 -10.99 -0.07 8.79 16 4 O -0.55 -10.89 14.37 5.56 0.08 -10.81 16 5 N -0.71 -12.74 5.29 -60.30 -0.32 -13.06 16 6 C 0.12 2.59 5.61 -4.04 -0.02 2.57 16 7 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 8 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 9 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 12 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C -0.13 -1.58 4.61 -26.48 -0.12 -1.71 16 17 C 0.06 0.73 6.87 37.37 0.26 0.98 16 18 O -0.32 -4.39 10.27 -19.25 -0.20 -4.59 16 19 C 0.14 1.96 6.47 -39.19 -0.25 1.70 16 20 C -0.15 -1.85 9.94 -39.34 -0.39 -2.24 16 21 C -0.08 -0.92 10.04 -39.66 -0.40 -1.32 16 22 C -0.15 -1.70 10.04 -39.61 -0.40 -2.10 16 23 C -0.08 -0.98 8.09 -39.53 -0.32 -1.30 16 24 C -0.15 -2.04 4.68 -104.44 -0.49 -2.53 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.70 5.96 -51.93 -0.31 0.39 16 28 H 0.40 6.31 5.68 -40.82 -0.23 6.08 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.09 1.13 7.69 -51.93 -0.40 0.73 16 35 H 0.08 0.83 8.10 -51.93 -0.42 0.40 16 36 H 0.08 1.20 6.45 -51.93 -0.33 0.87 16 37 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.13 1.41 5.31 -52.49 -0.28 1.13 16 LS Contribution 331.04 15.07 4.99 4.99 Total: -1.00 -31.61 331.04 -8.03 -39.64 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.74 Total: 4.68 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -2.55 Total: -11.93 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.42 Total: -38.29 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.12 Total: -15.40 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.61 -8.03 -39.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.462 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds