Wall clock time and date at job start Tue Mar 31 2020 07:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.43927 * 2 1 4 4 O 1.21278 * 119.99897 * 120.08297 * 3 2 1 5 5 N 1.34769 * 120.00027 * 300.09095 * 3 2 1 6 6 C 1.46506 * 120.00186 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47191 * 179.97438 * 6 5 3 8 8 C 1.50701 * 109.47031 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00038 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00106 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99908 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99979 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47276 * 59.99598 * 12 10 8 14 14 H 1.48507 * 109.47319 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47191 * 299.99440 * 12 10 8 16 16 C 1.53069 * 109.40252 * 119.89554 * 2 1 3 17 17 C 1.53410 * 108.30056 * 168.23365 * 16 2 1 18 18 O 1.42826 * 108.37734 * 295.28428 * 17 16 2 19 19 C 1.35845 * 117.85604 * 49.19041 * 18 17 16 20 20 C 1.39152 * 118.49859 * 162.93139 * 19 18 17 21 21 C 1.37967 * 120.21312 * 179.69647 * 20 19 18 22 22 C 1.38295 * 119.95823 * 0.02851 * 21 20 19 23 23 C 1.38101 * 119.98491 * 0.07602 * 22 21 20 24 24 C 1.38370 * 121.80666 * 342.77557 * 19 18 17 25 25 H 1.08999 * 109.47612 * 179.91444 * 1 2 3 26 26 H 1.09003 * 109.46978 * 299.91279 * 1 2 3 27 27 H 1.09000 * 109.47173 * 59.90857 * 1 2 3 28 28 H 0.97000 * 120.00313 * 359.97438 * 5 3 2 29 29 H 1.08990 * 109.47096 * 300.00136 * 6 5 3 30 30 H 1.09003 * 109.46903 * 59.99798 * 6 5 3 31 31 H 1.09004 * 109.47337 * 300.00195 * 7 6 5 32 32 H 1.09003 * 109.47061 * 60.00263 * 7 6 5 33 33 H 0.96998 * 120.00302 * 180.02562 * 11 10 8 34 34 H 1.08997 * 109.69719 * 287.93888 * 16 2 1 35 35 H 1.09003 * 109.69772 * 48.53303 * 16 2 1 36 36 H 1.08997 * 109.68148 * 55.00996 * 17 16 2 37 37 H 1.08997 * 109.68067 * 175.56127 * 17 16 2 38 38 H 1.07993 * 119.88811 * 359.71552 * 20 19 18 39 39 H 1.07993 * 120.02094 * 180.30413 * 21 20 19 40 40 H 1.08001 * 120.00579 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.84200 * 179.91356 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0315 1.4211 0.0000 4 8 2.7298 1.8177 0.9088 5 7 1.7040 2.2513 -1.0098 6 6 2.1911 3.6330 -1.0096 7 6 1.6794 4.3544 -2.2581 8 6 2.1810 5.7755 -2.2581 9 1 2.8029 6.1286 -1.4488 10 6 1.8460 6.6248 -3.2913 11 7 1.0892 6.1946 -4.2770 12 14 2.4672 8.3864 -3.2909 13 1 3.9522 8.3877 -3.2925 14 1 1.9707 9.0867 -4.5028 15 1 1.9728 9.0854 -2.0774 16 6 2.0385 -0.7196 1.2516 17 6 3.5434 -0.9675 1.0868 18 8 3.7347 -1.8660 -0.0067 19 6 3.0970 -1.5901 -1.1740 20 6 3.5350 -2.2200 -2.3349 21 6 2.9090 -1.9704 -3.5388 22 6 1.8428 -1.0912 -3.5935 23 6 1.4068 -0.4627 -2.4437 24 6 2.0317 -0.7090 -1.2324 25 1 -0.3634 -1.0276 -0.0015 26 1 -0.3633 0.5125 0.8908 27 1 -0.3633 0.5152 -0.8892 28 1 1.1457 1.9341 -1.7369 29 1 1.8284 4.1459 -0.1189 30 1 3.2811 3.6339 -1.0109 31 1 2.0425 3.8413 -3.1486 32 1 0.5894 4.3534 -2.2572 33 1 0.8538 6.7919 -5.0041 34 1 1.8624 -0.0982 2.1297 35 1 1.5196 -1.6715 1.3645 36 1 4.0503 -0.0248 0.8805 37 1 3.9449 -1.4086 1.9991 38 1 4.3676 -2.9066 -2.2933 39 1 3.2483 -2.4647 -4.4369 40 1 1.3519 -0.8956 -4.5354 41 1 0.5749 0.2245 -2.4894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935338658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:54 Heat of formation + Delta-G solvation = -85.334982 kcal Electronic energy + Delta-G solvation = -23346.477611 eV Core-core repulsion = 19996.932726 eV Total energy + Delta-G solvation = -3349.544885 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.43934 -40.27630 -38.51603 -36.73818 -36.25439 -34.83154 -31.95073 -31.31721 -31.21021 -29.61375 -27.02532 -25.44634 -24.75035 -23.55856 -22.71936 -22.32393 -20.47806 -18.90748 -18.54099 -18.25834 -17.48188 -16.84448 -16.65303 -16.48184 -16.40537 -15.90086 -15.27925 -15.19978 -14.79967 -14.74833 -14.38323 -14.26258 -13.98416 -13.59106 -13.30173 -13.25205 -12.98381 -12.94181 -12.79005 -12.61242 -12.54099 -12.26490 -12.05292 -11.70540 -11.63136 -11.49849 -11.38067 -10.88528 -10.61271 -10.08209 -9.76929 -9.16663 -8.25027 -6.35767 0.26403 0.44360 1.41057 1.43079 1.51107 1.55156 2.17056 2.31352 2.42617 2.82899 3.09645 3.36742 3.48446 3.64509 3.79288 3.81425 4.21947 4.26630 4.29701 4.42392 4.43757 4.46093 4.48905 4.50969 4.59440 4.74134 4.78437 4.80318 4.93089 4.98001 5.03374 5.11802 5.24717 5.33482 5.44304 5.46668 5.54437 5.57923 5.75858 5.83898 6.13931 6.42368 6.52104 6.76369 7.16022 7.33512 8.86573 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.004145 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.342028 B = 6753.914256 C = 7396.573295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.031 4.031 3 C 0.516 3.484 4 O -0.578 6.578 5 N -0.712 5.712 6 C 0.140 3.860 7 C 0.025 3.975 8 C -0.549 4.549 9 H 0.057 0.943 10 C 0.010 3.990 11 N -0.924 5.924 12 Si 0.963 3.037 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.268 1.268 16 C -0.131 4.131 17 C 0.056 3.944 18 O -0.326 6.326 19 C 0.117 3.883 20 C -0.161 4.161 21 C -0.080 4.080 22 C -0.154 4.154 23 C -0.090 4.090 24 C -0.165 4.165 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.405 0.595 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.006 0.994 32 H 0.010 0.990 33 H 0.266 0.734 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.047 0.953 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.158 0.842 40 H 0.146 0.854 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.936 -19.352 4.849 19.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.034 4.034 3 C 0.303 3.697 4 O -0.459 6.459 5 N -0.363 5.363 6 C 0.016 3.984 7 C -0.012 4.012 8 C -0.587 4.587 9 H 0.076 0.924 10 C -0.189 4.189 11 N -0.564 5.564 12 Si 0.788 3.212 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.193 1.193 16 C -0.168 4.168 17 C -0.019 4.019 18 O -0.240 6.240 19 C 0.072 3.928 20 C -0.180 4.180 21 C -0.098 4.098 22 C -0.172 4.172 23 C -0.108 4.108 24 C -0.167 4.167 25 H 0.110 0.890 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.242 0.758 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.024 0.976 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.066 0.934 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.175 0.825 40 H 0.164 0.836 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.403 -19.143 5.374 19.888 hybrid contribution -0.017 1.302 -0.415 1.367 sum -0.420 -17.841 4.959 18.522 Atomic orbital electron populations 1.21933 0.89264 1.04621 1.03433 1.19686 0.99248 0.89544 0.94967 1.20976 0.79549 0.87979 0.81198 1.90621 1.39715 1.78141 1.37385 1.46195 1.52706 1.12327 1.25068 1.21254 0.97487 0.80250 0.99366 1.19109 0.95883 0.94495 0.91759 1.21408 1.32386 0.97151 1.07779 0.92430 1.25836 0.94989 1.03212 0.94843 1.70040 1.37386 1.37776 1.11168 0.85525 0.78862 0.79004 0.77819 1.19507 1.20447 1.19297 1.22151 0.95988 1.01892 0.96787 1.23164 0.96846 0.93152 0.88700 1.85947 1.67848 1.50620 1.19601 1.19019 0.91374 0.95828 0.86589 1.20888 1.02976 1.03921 0.90192 1.21327 0.94438 0.96548 0.97493 1.21381 0.98601 0.98362 0.98874 1.21178 0.99330 0.98738 0.91543 1.19541 0.99074 1.02634 0.95410 0.88994 0.91116 0.91198 0.75839 0.93156 0.94007 0.97577 0.97137 0.92482 0.88780 0.87730 0.93431 0.84745 0.83958 0.82471 0.83586 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 7.89 71.98 0.57 -2.12 16 2 C -0.03 -0.80 0.54 -53.63 -0.03 -0.83 16 3 C 0.52 17.74 6.13 87.66 0.54 18.27 16 4 O -0.58 -23.47 14.37 -3.02 -0.04 -23.51 16 5 N -0.71 -25.68 5.29 -463.07 -2.45 -28.13 16 6 C 0.14 6.15 5.61 86.38 0.48 6.63 16 7 C 0.02 1.27 5.09 29.85 0.15 1.42 16 8 C -0.55 -30.76 9.11 25.60 0.23 -30.52 16 9 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 10 C 0.01 0.58 5.46 84.66 0.46 1.04 16 11 N -0.92 -53.87 13.29 21.45 0.28 -53.58 16 12 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 C -0.13 -2.96 4.61 30.76 0.14 -2.82 16 17 C 0.06 1.38 6.87 72.12 0.50 1.88 16 18 O -0.33 -8.75 10.27 -91.81 -0.94 -9.69 16 19 C 0.12 3.14 6.47 22.52 0.15 3.29 16 20 C -0.16 -3.69 9.94 22.42 0.22 -3.47 16 21 C -0.08 -1.58 10.04 22.22 0.22 -1.35 16 22 C -0.15 -3.24 10.04 22.25 0.22 -3.01 16 23 C -0.09 -2.12 8.09 22.30 0.18 -1.94 16 24 C -0.17 -4.31 4.68 -19.75 -0.09 -4.40 16 25 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.34 5.96 -2.39 -0.01 1.33 16 28 H 0.41 12.96 5.68 -92.71 -0.53 12.44 16 29 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.09 2.15 7.69 -2.39 -0.02 2.13 16 35 H 0.10 1.89 8.10 -2.39 -0.02 1.87 16 36 H 0.05 1.48 6.45 -2.39 -0.02 1.46 16 37 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 40 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.13 2.84 5.31 -2.91 -0.02 2.82 16 Total: -1.00 -67.89 331.04 3.34 -64.55 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.51 Total: 22.78 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 3.95 Total: -17.94 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -2.16 Total: -81.71 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.99 Total: -33.20 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -67.89 3.34 -64.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.784 kcal (2) G-P(sol) polarization free energy of solvation -67.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds