Wall clock time and date at job start Tue Mar 31 2020 07:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47054 * 275.93387 * 3 2 1 5 5 C 1.36958 * 120.00473 * 270.55365 * 4 3 2 6 6 H 1.08005 * 120.00370 * 128.74941 * 5 4 3 7 7 C 1.38982 * 119.99757 * 308.75101 * 5 4 3 8 8 N 1.31414 * 119.99618 * 171.34367 * 7 5 4 9 9 Si 1.86799 * 120.00234 * 351.34590 * 7 5 4 10 10 H 1.48493 * 109.47342 * 91.28295 * 9 7 5 11 11 H 1.48502 * 109.46790 * 211.28467 * 9 7 5 12 12 H 1.48502 * 109.46858 * 331.28302 * 9 7 5 13 13 C 1.34783 * 119.99677 * 90.55106 * 4 3 2 14 14 O 1.21647 * 119.99917 * 3.36490 * 13 4 3 15 15 C 1.47297 * 119.99879 * 183.36298 * 13 4 3 16 16 C 1.47031 * 127.19959 * 353.23099 * 15 13 4 17 17 C 1.34167 * 105.96293 * 179.97438 * 16 15 13 18 18 C 1.50699 * 125.42951 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47037 * 59.98143 * 18 17 16 20 20 C 1.53000 * 109.47182 * 179.97438 * 18 17 16 21 21 C 1.53001 * 109.47141 * 299.98201 * 18 17 16 22 22 O 1.34227 * 109.14163 * 0.02562 * 17 16 15 23 23 C 1.33676 * 110.90975 * 359.97438 * 22 17 16 24 24 C 1.50699 * 125.80758 * 179.97438 * 23 22 17 25 25 H 4.40644 * 5.51287 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47384 * 155.94008 * 3 2 1 27 27 H 1.08993 * 109.47623 * 35.93958 * 3 2 1 28 28 H 0.97000 * 119.99660 * 179.97438 * 8 7 5 29 29 H 1.08003 * 127.01605 * 0.04005 * 16 15 13 30 30 H 1.09005 * 109.47380 * 59.99658 * 19 18 17 31 31 H 1.08993 * 109.47708 * 179.97438 * 19 18 17 32 32 H 1.09003 * 109.47242 * 299.99956 * 19 18 17 33 33 H 1.08999 * 109.47185 * 60.00285 * 20 18 17 34 34 H 1.08999 * 109.47552 * 180.02562 * 20 18 17 35 35 H 1.08999 * 109.47245 * 300.00730 * 20 18 17 36 36 H 1.08996 * 109.47126 * 59.99644 * 21 18 17 37 37 H 1.09003 * 109.47023 * 179.97438 * 21 18 17 38 38 H 1.08999 * 109.47041 * 299.99602 * 21 18 17 39 39 H 1.09005 * 109.47498 * 0.03135 * 24 23 22 40 40 H 1.09003 * 109.46786 * 120.02671 * 24 23 22 41 41 H 1.08998 * 109.47268 * 240.02624 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1419 1.3738 5 6 3.3514 0.9707 2.1425 6 1 2.9210 1.0365 3.1309 7 6 4.1253 2.0150 1.6506 8 7 4.1950 3.1489 2.3112 9 14 5.0663 1.8069 0.0504 10 1 4.2227 2.2637 -1.0830 11 1 6.3105 2.6161 0.0991 12 1 5.4139 0.3753 -0.1368 13 6 3.3701 -1.3681 1.8814 14 8 3.2362 -2.3528 1.1798 15 6 3.7900 -1.5157 3.2855 16 6 4.1321 -0.4410 4.2287 17 6 4.4512 -1.0492 5.3812 18 6 4.8731 -0.3525 6.6491 19 6 3.7556 0.5841 7.1125 20 6 5.1490 -1.3937 7.7357 21 6 6.1430 0.4595 6.3865 22 8 4.3358 -2.3773 5.2246 23 6 3.9426 -2.6789 3.9831 24 6 3.7087 -4.0671 3.4451 25 1 -1.0500 0.0002 -0.0001 26 1 3.0089 0.9392 -0.4190 27 1 3.0098 -0.8311 -0.6031 28 1 4.7354 3.8776 1.9680 29 1 4.1265 0.6213 4.0339 30 1 2.8508 0.0056 7.2995 31 1 4.0605 1.0877 8.0297 32 1 3.5589 1.3259 6.3384 33 1 5.9452 -2.0611 7.4057 34 1 5.4538 -0.8898 8.6529 35 1 4.2443 -1.9722 7.9227 36 1 5.9463 1.2013 5.6124 37 1 6.4479 0.9638 7.3034 38 1 6.9392 -0.2077 6.0564 39 1 3.9094 -4.7988 4.2277 40 1 2.6731 -4.1600 3.1177 41 1 4.3742 -4.2464 2.6007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935812797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:34 Heat of formation + Delta-G solvation = 36.734078 kcal Electronic energy + Delta-G solvation = -23744.734962 eV Core-core repulsion = 20400.483389 eV Total energy + Delta-G solvation = -3344.251573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.91128 -38.70751 -36.63933 -35.22957 -32.95838 -32.09307 -31.59516 -30.72923 -27.36865 -27.01633 -26.92166 -25.96687 -24.81791 -21.96933 -20.91235 -19.76655 -18.73091 -17.79158 -16.57449 -16.04554 -15.70556 -15.52804 -15.22850 -14.42899 -14.18674 -13.91221 -13.77269 -13.57505 -13.08388 -12.75691 -12.67603 -12.57441 -12.40437 -12.13907 -12.04347 -12.01186 -11.85318 -11.45494 -11.34868 -11.10793 -10.82533 -10.80011 -10.71696 -10.43686 -10.18569 -9.81730 -9.41786 -9.22207 -8.81690 -8.74420 -7.88266 -7.58296 -6.48910 -4.27547 2.11577 2.89423 3.01676 3.16657 3.24622 3.27956 3.36953 3.50913 4.07786 4.31173 4.57356 4.82370 4.86809 5.06931 5.13320 5.15788 5.37652 5.52661 5.72380 5.82528 5.85228 5.93561 5.95804 5.96543 5.99705 6.04221 6.06494 6.14071 6.20369 6.25641 6.28204 6.50271 6.51645 6.52516 6.54130 6.75871 6.84445 7.32948 7.40120 7.83231 8.01277 8.17704 8.25383 8.89782 9.23180 9.58848 10.58135 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014314 B = 0.006904 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.700950 B = 4054.537286 C = 5082.214895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.162 4.162 3 C 0.200 3.800 4 N -0.461 5.461 5 C -0.341 4.341 6 H 0.112 0.888 7 C 0.069 3.931 8 N -0.865 5.865 9 Si 0.872 3.128 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.258 1.258 13 C 0.565 3.435 14 O -0.591 6.591 15 C -0.201 4.201 16 C -0.144 4.144 17 C -0.045 4.045 18 C 0.023 3.977 19 C -0.140 4.140 20 C -0.140 4.140 21 C -0.140 4.140 22 O -0.180 6.180 23 C 0.033 3.967 24 C -0.059 4.059 25 H 0.212 0.788 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.276 0.724 29 H 0.191 0.809 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.155 -5.321 6.534 8.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.163 4.163 3 C 0.078 3.922 4 N -0.181 5.181 5 C -0.468 4.468 6 H 0.129 0.871 7 C -0.138 4.138 8 N -0.500 5.500 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.182 1.182 13 C 0.357 3.643 14 O -0.477 6.477 15 C -0.205 4.205 16 C -0.163 4.163 17 C -0.092 4.092 18 C 0.023 3.977 19 C -0.197 4.197 20 C -0.197 4.197 21 C -0.197 4.197 22 O -0.078 6.078 23 C -0.019 4.019 24 C -0.115 4.115 25 H 0.229 0.771 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.208 0.792 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.260 -5.770 6.425 8.727 hybrid contribution 0.181 0.442 -0.977 1.087 sum 1.440 -5.327 5.449 7.755 Atomic orbital electron populations 1.24644 0.95618 1.03368 1.01284 1.23753 0.94901 0.98293 0.99387 1.18698 0.83812 1.02126 0.87575 1.43385 1.57705 1.05829 1.11217 1.19255 1.31768 0.94304 1.01511 0.87069 1.25466 0.95420 0.94979 0.97930 1.69638 1.38185 1.02877 1.39341 0.86926 0.80017 0.79757 0.83353 1.19772 1.20996 1.18177 1.17476 0.77985 0.83061 0.85760 1.90624 1.57373 1.38579 1.61102 1.21049 1.11183 0.92511 0.95774 1.23861 1.00289 1.02275 0.89847 1.22152 1.09195 0.79783 0.98113 1.18975 0.96116 0.93900 0.88729 1.21924 0.97237 0.99056 1.01497 1.21826 1.01971 0.98356 0.97557 1.21928 0.95713 0.99938 1.02161 1.83562 1.68181 1.25681 1.30390 1.22539 1.00424 0.96741 0.82238 1.20245 1.03811 0.87475 1.00013 0.77142 0.89477 0.88784 0.91333 0.79189 0.92598 0.92109 0.91144 0.92446 0.92353 0.92456 0.91098 0.92134 0.92593 0.91697 0.89640 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.37 19.25 29.55 0.57 -3.80 16 2 C -0.16 -3.54 13.67 -37.12 -0.51 -4.05 16 3 C 0.20 4.56 4.64 -6.83 -0.03 4.53 16 4 N -0.46 -11.39 1.94 -119.19 -0.23 -11.62 16 5 C -0.34 -8.72 7.03 -14.99 -0.11 -8.82 16 6 H 0.11 2.99 5.76 -52.48 -0.30 2.68 16 7 C 0.07 1.77 5.44 -17.45 -0.09 1.68 16 8 N -0.87 -22.73 13.96 55.50 0.77 -21.96 16 9 Si 0.87 20.03 24.96 -169.99 -4.24 15.79 16 10 H -0.27 -5.98 6.77 56.52 0.38 -5.59 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 13 C 0.57 13.90 7.62 -12.57 -0.10 13.81 16 14 O -0.59 -14.89 15.23 5.24 0.08 -14.81 16 15 C -0.20 -4.53 6.16 -103.28 -0.64 -5.16 16 16 C -0.14 -3.07 8.38 -37.45 -0.31 -3.38 16 17 C -0.04 -0.82 5.67 -35.74 -0.20 -1.03 16 18 C 0.02 0.34 0.92 -155.66 -0.14 0.19 16 19 C -0.14 -1.93 8.34 37.16 0.31 -1.62 16 20 C -0.14 -1.74 8.01 37.16 0.30 -1.44 16 21 C -0.14 -1.95 8.34 37.16 0.31 -1.64 16 22 O -0.18 -3.36 9.91 7.56 0.07 -3.28 16 23 C 0.03 0.65 7.38 -34.94 -0.26 0.39 16 24 C -0.06 -0.95 9.18 36.01 0.33 -0.62 16 25 H 0.21 2.99 7.80 -54.09 -0.42 2.57 16 26 H 0.09 1.97 4.02 -51.93 -0.21 1.76 16 27 H 0.09 2.07 7.36 -51.93 -0.38 1.68 16 28 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.19 4.40 5.08 -52.48 -0.27 4.13 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.09 7.97 -51.93 -0.41 0.68 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.12 7.97 -51.93 -0.41 0.70 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.09 1.44 8.00 -51.93 -0.42 1.03 16 LS Contribution 342.55 15.07 5.16 5.16 Total: -1.00 -29.13 342.55 -4.74 -33.87 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.78 Total: 7.81 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -0.57 Total: -10.95 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.54 Total: -33.58 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.15 Total: -18.09 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.24 Total: 15.79 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.13 -4.74 -33.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935812797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.600 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds