Wall clock time and date at job start Tue Mar 31 2020 07:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47054 * 275.93387 * 3 2 1 5 5 C 1.36958 * 120.00473 * 270.55365 * 4 3 2 6 6 H 1.08005 * 120.00370 * 128.74941 * 5 4 3 7 7 C 1.38982 * 119.99757 * 308.75101 * 5 4 3 8 8 N 1.31414 * 119.99618 * 171.34367 * 7 5 4 9 9 Si 1.86799 * 120.00234 * 351.34590 * 7 5 4 10 10 H 1.48493 * 109.47342 * 91.28295 * 9 7 5 11 11 H 1.48502 * 109.46790 * 211.28467 * 9 7 5 12 12 H 1.48502 * 109.46858 * 331.28302 * 9 7 5 13 13 C 1.34783 * 119.99677 * 90.55106 * 4 3 2 14 14 O 1.21647 * 119.99917 * 3.36490 * 13 4 3 15 15 C 1.47297 * 119.99879 * 183.36298 * 13 4 3 16 16 C 1.47031 * 127.19959 * 353.23099 * 15 13 4 17 17 C 1.34167 * 105.96293 * 179.97438 * 16 15 13 18 18 C 1.50699 * 125.42951 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47037 * 59.98143 * 18 17 16 20 20 C 1.53000 * 109.47182 * 179.97438 * 18 17 16 21 21 C 1.53001 * 109.47141 * 299.98201 * 18 17 16 22 22 O 1.34227 * 109.14163 * 0.02562 * 17 16 15 23 23 C 1.33676 * 110.90975 * 359.97438 * 22 17 16 24 24 C 1.50699 * 125.80758 * 179.97438 * 23 22 17 25 25 H 4.40644 * 5.51287 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47384 * 155.94008 * 3 2 1 27 27 H 1.08993 * 109.47623 * 35.93958 * 3 2 1 28 28 H 0.97000 * 119.99660 * 179.97438 * 8 7 5 29 29 H 1.08003 * 127.01605 * 0.04005 * 16 15 13 30 30 H 1.09005 * 109.47380 * 59.99658 * 19 18 17 31 31 H 1.08993 * 109.47708 * 179.97438 * 19 18 17 32 32 H 1.09003 * 109.47242 * 299.99956 * 19 18 17 33 33 H 1.08999 * 109.47185 * 60.00285 * 20 18 17 34 34 H 1.08999 * 109.47552 * 180.02562 * 20 18 17 35 35 H 1.08999 * 109.47245 * 300.00730 * 20 18 17 36 36 H 1.08996 * 109.47126 * 59.99644 * 21 18 17 37 37 H 1.09003 * 109.47023 * 179.97438 * 21 18 17 38 38 H 1.08999 * 109.47041 * 299.99602 * 21 18 17 39 39 H 1.09005 * 109.47498 * 0.03135 * 24 23 22 40 40 H 1.09003 * 109.46786 * 120.02671 * 24 23 22 41 41 H 1.08998 * 109.47268 * 240.02624 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1419 1.3738 5 6 3.3514 0.9707 2.1425 6 1 2.9210 1.0365 3.1309 7 6 4.1253 2.0150 1.6506 8 7 4.1950 3.1489 2.3112 9 14 5.0663 1.8069 0.0504 10 1 4.2227 2.2637 -1.0830 11 1 6.3105 2.6161 0.0991 12 1 5.4139 0.3753 -0.1368 13 6 3.3701 -1.3681 1.8814 14 8 3.2362 -2.3528 1.1798 15 6 3.7900 -1.5157 3.2855 16 6 4.1321 -0.4410 4.2287 17 6 4.4512 -1.0492 5.3812 18 6 4.8731 -0.3525 6.6491 19 6 3.7556 0.5841 7.1125 20 6 5.1490 -1.3937 7.7357 21 6 6.1430 0.4595 6.3865 22 8 4.3358 -2.3773 5.2246 23 6 3.9426 -2.6789 3.9831 24 6 3.7087 -4.0671 3.4451 25 1 -1.0500 0.0002 -0.0001 26 1 3.0089 0.9392 -0.4190 27 1 3.0098 -0.8311 -0.6031 28 1 4.7354 3.8776 1.9680 29 1 4.1265 0.6213 4.0339 30 1 2.8508 0.0056 7.2995 31 1 4.0605 1.0877 8.0297 32 1 3.5589 1.3259 6.3384 33 1 5.9452 -2.0611 7.4057 34 1 5.4538 -0.8898 8.6529 35 1 4.2443 -1.9722 7.9227 36 1 5.9463 1.2013 5.6124 37 1 6.4479 0.9638 7.3034 38 1 6.9392 -0.2077 6.0564 39 1 3.9094 -4.7988 4.2277 40 1 2.6731 -4.1600 3.1177 41 1 4.3742 -4.2464 2.6007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935812797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:33 Heat of formation + Delta-G solvation = 21.219527 kcal Electronic energy + Delta-G solvation = -23745.407723 eV Core-core repulsion = 20400.483389 eV Total energy + Delta-G solvation = -3344.924334 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.47085 -40.56891 -37.85979 -37.09467 -34.69968 -33.84361 -33.31474 -32.17674 -28.93935 -28.14523 -28.12452 -27.58542 -26.60985 -23.64198 -22.42581 -21.26215 -20.59448 -19.38842 -18.11964 -17.84645 -17.32058 -17.20148 -16.89732 -16.11921 -15.89032 -15.32908 -14.93791 -14.92150 -14.87059 -14.47728 -14.42367 -13.93681 -13.79291 -13.76466 -13.70927 -13.12405 -13.03462 -12.97795 -12.73704 -12.56582 -12.46606 -12.10576 -12.01278 -11.91900 -11.66800 -11.54481 -11.20550 -11.01793 -10.64332 -10.48694 -9.76938 -9.17435 -8.47535 -6.28508 0.48021 1.15632 1.23552 1.32321 1.37375 1.63951 1.87116 1.89331 2.15887 2.47141 2.82729 2.91491 3.52840 3.56661 3.88824 4.04155 4.07623 4.12185 4.25273 4.30978 4.39166 4.50499 4.66719 4.71299 4.77292 4.78108 4.89091 4.90441 4.98173 5.02108 5.03277 5.09042 5.15053 5.23314 5.37119 5.41046 5.44530 5.49390 5.71097 6.05874 6.14554 6.26483 6.67082 6.92101 7.28725 7.66332 8.62140 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014314 B = 0.006904 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.700950 B = 4054.537286 C = 5082.214895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.232 4.232 3 C 0.199 3.801 4 N -0.470 5.470 5 C -0.334 4.334 6 H 0.089 0.911 7 C 0.037 3.963 8 N -0.894 5.894 9 Si 0.916 3.084 10 H -0.255 1.255 11 H -0.277 1.277 12 H -0.269 1.269 13 C 0.557 3.443 14 O -0.605 6.605 15 C -0.246 4.246 16 C -0.171 4.171 17 C -0.027 4.027 18 C 0.019 3.981 19 C -0.136 4.136 20 C -0.134 4.134 21 C -0.137 4.137 22 O -0.170 6.170 23 C 0.046 3.954 24 C -0.056 4.056 25 H 0.259 0.741 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.280 0.720 29 H 0.165 0.835 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 -6.366 7.779 10.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.233 4.233 3 C 0.077 3.923 4 N -0.191 5.191 5 C -0.462 4.462 6 H 0.106 0.894 7 C -0.167 4.167 8 N -0.530 5.530 9 Si 0.741 3.259 10 H -0.180 1.180 11 H -0.203 1.203 12 H -0.194 1.194 13 C 0.350 3.650 14 O -0.492 6.492 15 C -0.250 4.250 16 C -0.190 4.190 17 C -0.075 4.075 18 C 0.019 3.981 19 C -0.193 4.193 20 C -0.191 4.191 21 C -0.194 4.194 22 O -0.067 6.067 23 C -0.007 4.007 24 C -0.112 4.112 25 H 0.275 0.725 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.090 0.910 29 H 0.182 0.818 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.055 -6.804 7.665 10.303 hybrid contribution 0.150 0.729 -1.304 1.501 sum 1.206 -6.076 6.361 8.879 Atomic orbital electron populations 1.25712 0.96491 1.00028 0.97876 1.23875 0.95483 1.01413 1.02515 1.18621 0.85250 1.01943 0.86446 1.43492 1.58119 1.05584 1.11879 1.19031 1.31599 0.94597 1.00936 0.89403 1.25892 0.95918 0.94690 1.00236 1.69698 1.39178 1.03500 1.40642 0.86244 0.79439 0.78952 0.81242 1.17999 1.20326 1.19410 1.17846 0.77667 0.82900 0.86634 1.90579 1.58208 1.38716 1.61733 1.21180 1.13967 0.94336 0.95536 1.23533 1.03013 1.01148 0.91319 1.22782 1.06591 0.79485 0.98621 1.19247 0.96560 0.94536 0.87757 1.21904 0.97121 0.98375 1.01948 1.21799 1.02021 0.97666 0.97606 1.21908 0.95324 0.99306 1.02854 1.83613 1.67591 1.25653 1.29840 1.23113 0.98158 0.97456 0.81961 1.20371 1.03648 0.86184 1.01040 0.72488 0.89767 0.88805 0.90954 0.81759 0.92585 0.88878 0.93918 0.92492 0.89386 0.92464 0.93957 0.88885 0.92614 0.87844 0.89692 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.56 19.25 74.32 1.43 -5.13 16 2 C -0.23 -10.11 13.67 31.13 0.43 -9.68 16 3 C 0.20 9.31 4.64 84.57 0.39 9.70 16 4 N -0.47 -24.09 1.94 -649.25 -1.26 -25.35 16 5 C -0.33 -17.90 7.03 84.07 0.59 -17.31 16 6 H 0.09 5.06 5.76 -2.91 -0.02 5.05 16 7 C 0.04 1.98 5.44 84.93 0.46 2.44 16 8 N -0.89 -48.54 13.96 21.67 0.30 -48.24 16 9 Si 0.92 42.06 24.96 68.60 1.71 43.77 16 10 H -0.25 -10.92 6.77 99.48 0.67 -10.25 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 13 C 0.56 28.30 7.62 86.62 0.66 28.96 16 14 O -0.61 -31.16 15.23 -4.18 -0.06 -31.22 16 15 C -0.25 -11.42 6.16 -19.00 -0.12 -11.54 16 16 C -0.17 -7.62 8.38 23.65 0.20 -7.43 16 17 C -0.03 -0.99 5.67 24.76 0.14 -0.85 16 18 C 0.02 0.54 0.92 -52.93 -0.05 0.49 16 19 C -0.14 -3.63 8.34 71.98 0.60 -3.03 16 20 C -0.13 -2.90 8.01 71.98 0.58 -2.32 16 21 C -0.14 -3.68 8.34 71.98 0.60 -3.07 16 22 O -0.17 -6.15 9.91 4.14 0.04 -6.11 16 23 C 0.05 1.80 7.38 25.28 0.19 1.99 16 24 C -0.06 -1.72 9.18 71.24 0.65 -1.06 16 25 H 0.26 6.20 7.80 -4.42 -0.03 6.17 16 26 H 0.08 3.88 4.02 -2.39 -0.01 3.87 16 27 H 0.09 4.26 7.36 -2.39 -0.02 4.24 16 28 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.17 8.21 5.08 -2.91 -0.01 8.20 16 30 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.36 7.97 -2.39 -0.02 1.34 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 1.37 7.97 -2.39 -0.02 1.35 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.09 2.73 8.00 -2.39 -0.02 2.71 16 Total: -1.00 -65.63 342.55 8.48 -57.15 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.99 Total: 27.84 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 6.75 Total: -17.85 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -0.95 Total: -73.59 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.02 Total: -37.33 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.71 Total: 43.77 kcal Total: -65.63 8.48 -57.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935812797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.372 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds