Wall clock time and date at job start Tue Mar 31 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 116.99646 * 2 1 4 4 C 1.38644 * 120.09651 * 0.02562 * 3 2 1 5 5 C 1.38174 * 120.24175 * 179.97438 * 4 3 2 6 6 C 1.38545 * 119.87554 * 359.97327 * 5 4 3 7 7 C 1.38505 * 119.89747 * 0.05056 * 6 5 4 8 8 C 1.38041 * 120.29279 * 359.94981 * 7 6 5 9 9 C 1.50706 * 120.06273 * 180.02562 * 8 7 6 10 10 C 1.51385 * 109.77025 * 180.02562 * 6 5 4 11 11 C 1.54341 * 105.17665 * 342.81604 * 10 6 5 12 12 H 1.09002 * 110.99160 * 268.07747 * 11 10 6 13 13 N 1.46495 * 110.81896 * 144.60940 * 11 10 6 14 14 C 1.34774 * 119.99940 * 160.56954 * 13 11 10 15 15 O 1.21284 * 119.99969 * 359.97438 * 14 13 11 16 16 C 1.50703 * 120.00075 * 179.97438 * 14 13 11 17 17 C 1.50698 * 109.47393 * 179.97438 * 16 14 13 18 18 H 1.08008 * 119.99807 * 0.02562 * 17 16 14 19 19 C 1.37874 * 120.00501 * 180.02562 * 17 16 14 20 20 N 1.31519 * 119.99422 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00236 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47146 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47137 * 120.00201 * 21 19 17 24 24 H 1.48503 * 109.46996 * 239.99591 * 21 19 17 25 25 C 1.51378 * 130.50853 * 180.02562 * 5 4 3 26 26 H 1.08997 * 109.47127 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47247 * 299.99933 * 1 2 3 28 28 H 1.09000 * 109.47420 * 59.99435 * 1 2 3 29 29 H 1.07998 * 119.91038 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.84939 * 179.97438 * 7 6 5 31 31 H 1.09003 * 109.46719 * 89.99691 * 9 8 7 32 32 H 1.08993 * 109.47014 * 210.00232 * 9 8 7 33 33 H 1.08999 * 109.46615 * 330.00363 * 9 8 7 34 34 H 1.09004 * 110.30065 * 223.89364 * 10 6 5 35 35 H 1.08999 * 110.38782 * 101.78732 * 10 6 5 36 36 H 0.96996 * 120.00077 * 340.56094 * 13 11 10 37 37 H 1.08993 * 109.47166 * 299.99822 * 16 14 13 38 38 H 1.09006 * 109.46735 * 59.99547 * 16 14 13 39 39 H 0.97006 * 119.99855 * 180.02562 * 20 19 17 40 40 H 1.09002 * 110.30452 * 78.19462 * 25 5 4 41 41 H 1.08997 * 110.29986 * 316.14054 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2927 2.3749 0.0005 5 6 1.9168 3.6076 0.0011 6 6 3.3003 3.6807 0.0016 7 6 4.0531 2.5181 0.0006 8 6 3.4310 1.2858 0.0000 9 6 4.2551 0.0241 -0.0005 10 6 3.7365 5.1304 0.0028 11 6 2.4903 5.9276 -0.4372 12 1 2.4808 6.0725 -1.5175 13 7 2.4230 7.2147 0.2591 14 6 1.6666 8.2122 -0.2400 15 8 1.0419 8.0444 -1.2660 16 6 1.5969 9.5361 0.4766 17 6 0.6912 10.4713 -0.2825 18 1 0.2135 10.1399 -1.1928 19 6 0.4724 11.7498 0.1848 20 7 1.0546 12.1535 1.2929 21 14 -0.6507 12.9087 -0.7559 22 1 -1.1774 12.2183 -1.9605 23 1 -1.7818 13.3175 0.1152 24 1 0.1146 14.1119 -1.1704 25 6 1.3341 5.0048 0.0022 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.2142 2.3184 0.0014 30 1 5.1315 2.5760 0.0006 31 1 4.4538 -0.2805 1.0271 32 1 3.7087 -0.7665 -0.5147 33 1 5.1989 0.2069 -0.5142 34 1 4.5512 5.2807 -0.7056 35 1 4.0454 5.4332 1.0033 36 1 2.9228 7.3490 1.0795 37 1 1.2033 9.3849 1.4817 38 1 2.5955 9.9686 0.5387 39 1 0.9004 13.0529 1.6219 40 1 0.9958 5.2727 1.0032 41 1 0.5079 5.0705 -0.7057 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:30 Heat of formation + Delta-G solvation = -64.678953 kcal Electronic energy + Delta-G solvation = -22033.722132 eV Core-core repulsion = 18685.072960 eV Total energy + Delta-G solvation = -3348.649172 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.77208 -39.20487 -38.07452 -35.72461 -33.17367 -32.92106 -31.50823 -29.97350 -28.69881 -28.13617 -26.81280 -25.54236 -23.60565 -22.08156 -20.89795 -20.47100 -19.64592 -17.57771 -16.85423 -16.46468 -16.03064 -15.78603 -15.62107 -15.09974 -14.56025 -14.36971 -14.10077 -13.93983 -13.73972 -13.37171 -13.05482 -12.87031 -12.46469 -12.35924 -12.30621 -12.13175 -12.05293 -11.75692 -11.41525 -11.32717 -11.11301 -10.83110 -10.74198 -10.64523 -10.51415 -9.95415 -9.25435 -8.82796 -8.67493 -8.53390 -8.42105 -8.02785 -6.06098 -4.05385 1.19325 1.28068 3.06542 3.33271 3.40360 3.48690 3.54401 3.68121 3.80520 4.30347 4.48115 4.60632 4.71293 4.79531 4.90590 4.98812 5.02566 5.09241 5.22146 5.23231 5.32441 5.41873 5.44416 5.48624 5.52410 5.71100 5.78218 5.79606 5.93862 6.03271 6.15829 6.18100 6.27297 6.43009 6.57297 6.64621 7.04929 7.19398 7.20642 7.32708 7.95909 8.05241 8.43465 9.06034 9.22300 9.59876 11.06383 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034005 B = 0.002790 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.220082 B =10032.564201 C =10571.660689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.124 3.876 4 C -0.192 4.192 5 C -0.051 4.051 6 C -0.126 4.126 7 C -0.069 4.069 8 C -0.122 4.122 9 C -0.101 4.101 10 C -0.082 4.082 11 C 0.150 3.850 12 H 0.096 0.904 13 N -0.741 5.741 14 C 0.516 3.484 15 O -0.544 6.544 16 C 0.004 3.996 17 C -0.507 4.507 18 H 0.075 0.925 19 C 0.054 3.946 20 N -0.901 5.901 21 Si 0.900 3.100 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.097 4.097 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.397 0.603 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.261 0.739 40 H 0.087 0.913 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.394 -24.092 0.649 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.079 3.921 4 C -0.210 4.210 5 C -0.052 4.052 6 C -0.127 4.127 7 C -0.087 4.087 8 C -0.123 4.123 9 C -0.157 4.157 10 C -0.119 4.119 11 C 0.044 3.956 12 H 0.114 0.886 13 N -0.395 5.395 14 C 0.306 3.694 15 O -0.419 6.419 16 C -0.035 4.035 17 C -0.545 4.545 18 H 0.094 0.906 19 C -0.147 4.147 20 N -0.541 5.541 21 Si 0.728 3.272 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.135 4.135 26 H 0.117 0.883 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.231 0.769 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.013 -24.220 -0.009 24.734 hybrid contribution -0.671 0.854 0.105 1.091 sum 4.342 -23.366 0.096 23.766 Atomic orbital electron populations 1.23051 0.78496 1.03759 1.01560 1.86038 1.21234 1.26734 1.88911 1.18616 0.91675 0.83918 0.97861 1.20594 0.99959 0.91126 1.09356 1.20382 0.94374 0.94204 0.96242 1.20434 0.93961 0.94742 1.03562 1.20287 0.99497 0.89875 0.99064 1.19067 0.90527 0.95827 1.06844 1.20560 0.98623 0.94457 1.02100 1.21214 0.98136 0.90099 1.02498 1.21357 0.92730 0.83316 0.98246 0.88637 1.46353 1.51720 1.12518 1.28938 1.22042 0.76288 0.86128 0.84972 1.90538 1.43826 1.82656 1.24923 1.19249 0.99759 0.87628 0.96848 1.21212 1.27150 0.96379 1.09782 0.90639 1.25013 0.96305 0.98191 0.95174 1.69972 1.43966 1.18640 1.21532 0.86385 0.80327 0.80426 0.80059 1.19479 1.21026 1.21011 1.21569 0.99397 0.89592 1.02989 0.88339 0.92621 0.92602 0.85638 0.85532 0.91592 0.91334 0.91771 0.90156 0.89719 0.76893 0.93458 0.93420 0.92972 0.89498 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.34 9.55 -19.41 -0.19 -3.53 16 3 C 0.12 1.46 6.66 -39.26 -0.26 1.20 16 4 C -0.19 -2.31 9.03 -39.45 -0.36 -2.66 16 5 C -0.05 -0.67 6.14 -104.20 -0.64 -1.31 16 6 C -0.13 -1.52 6.14 -104.07 -0.64 -2.16 16 7 C -0.07 -0.75 9.69 -39.56 -0.38 -1.13 16 8 C -0.12 -1.35 5.89 -104.52 -0.62 -1.96 16 9 C -0.10 -0.86 9.79 36.01 0.35 -0.51 16 10 C -0.08 -0.94 6.48 -26.84 -0.17 -1.11 16 11 C 0.15 2.19 3.36 -66.53 -0.22 1.96 16 12 H 0.10 1.57 7.71 -51.93 -0.40 1.17 16 13 N -0.74 -12.28 5.17 -52.45 -0.27 -12.55 16 14 C 0.52 11.47 7.82 -10.98 -0.09 11.39 16 15 O -0.54 -13.94 15.19 5.55 0.08 -13.86 16 16 C 0.00 0.11 5.46 -29.03 -0.16 -0.05 16 17 C -0.51 -14.66 8.92 -34.44 -0.31 -14.97 16 18 H 0.08 2.29 6.75 -52.48 -0.35 1.93 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 21 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 25 C -0.10 -1.37 6.48 -26.85 -0.17 -1.54 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 28 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 29 H 0.13 1.31 6.29 -52.49 -0.33 0.98 16 30 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.60 7.54 -51.93 -0.39 0.20 16 33 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.87 7.78 -51.93 -0.40 0.46 16 36 H 0.40 5.51 8.37 -40.82 -0.34 5.16 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -33.31 342.32 -8.22 -41.53 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.95 Total: 2.03 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -2.77 Total: -10.23 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.47 Total: -38.20 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.10 Total: -17.39 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.31 -8.22 -41.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.145 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds