Wall clock time and date at job start Tue Mar 31 2020 05:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 116.99646 * 2 1 4 4 C 1.38644 * 120.09651 * 0.02562 * 3 2 1 5 5 C 1.38174 * 120.24175 * 179.97438 * 4 3 2 6 6 C 1.38545 * 119.87554 * 359.97327 * 5 4 3 7 7 C 1.38505 * 119.89747 * 0.05056 * 6 5 4 8 8 C 1.38041 * 120.29279 * 359.94981 * 7 6 5 9 9 C 1.50706 * 120.06273 * 180.02562 * 8 7 6 10 10 C 1.51385 * 109.77025 * 180.02562 * 6 5 4 11 11 C 1.54341 * 105.17665 * 342.81604 * 10 6 5 12 12 H 1.09002 * 110.99160 * 268.07747 * 11 10 6 13 13 N 1.46495 * 110.81896 * 144.60940 * 11 10 6 14 14 C 1.34774 * 119.99940 * 160.56954 * 13 11 10 15 15 O 1.21284 * 119.99969 * 359.97438 * 14 13 11 16 16 C 1.50703 * 120.00075 * 179.97438 * 14 13 11 17 17 C 1.50698 * 109.47393 * 179.97438 * 16 14 13 18 18 H 1.08008 * 119.99807 * 0.02562 * 17 16 14 19 19 C 1.37874 * 120.00501 * 180.02562 * 17 16 14 20 20 N 1.31519 * 119.99422 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00236 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47146 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47137 * 120.00201 * 21 19 17 24 24 H 1.48503 * 109.46996 * 239.99591 * 21 19 17 25 25 C 1.51378 * 130.50853 * 180.02562 * 5 4 3 26 26 H 1.08997 * 109.47127 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47247 * 299.99933 * 1 2 3 28 28 H 1.09000 * 109.47420 * 59.99435 * 1 2 3 29 29 H 1.07998 * 119.91038 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.84939 * 179.97438 * 7 6 5 31 31 H 1.09003 * 109.46719 * 89.99691 * 9 8 7 32 32 H 1.08993 * 109.47014 * 210.00232 * 9 8 7 33 33 H 1.08999 * 109.46615 * 330.00363 * 9 8 7 34 34 H 1.09004 * 110.30065 * 223.89364 * 10 6 5 35 35 H 1.08999 * 110.38782 * 101.78732 * 10 6 5 36 36 H 0.96996 * 120.00077 * 340.56094 * 13 11 10 37 37 H 1.08993 * 109.47166 * 299.99822 * 16 14 13 38 38 H 1.09006 * 109.46735 * 59.99547 * 16 14 13 39 39 H 0.97006 * 119.99855 * 180.02562 * 20 19 17 40 40 H 1.09002 * 110.30452 * 78.19462 * 25 5 4 41 41 H 1.08997 * 110.29986 * 316.14054 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2927 2.3749 0.0005 5 6 1.9168 3.6076 0.0011 6 6 3.3003 3.6807 0.0016 7 6 4.0531 2.5181 0.0006 8 6 3.4310 1.2858 0.0000 9 6 4.2551 0.0241 -0.0005 10 6 3.7365 5.1304 0.0028 11 6 2.4903 5.9276 -0.4372 12 1 2.4808 6.0725 -1.5175 13 7 2.4230 7.2147 0.2591 14 6 1.6666 8.2122 -0.2400 15 8 1.0419 8.0444 -1.2660 16 6 1.5969 9.5361 0.4766 17 6 0.6912 10.4713 -0.2825 18 1 0.2135 10.1399 -1.1928 19 6 0.4724 11.7498 0.1848 20 7 1.0546 12.1535 1.2929 21 14 -0.6507 12.9087 -0.7559 22 1 -1.1774 12.2183 -1.9605 23 1 -1.7818 13.3175 0.1152 24 1 0.1146 14.1119 -1.1704 25 6 1.3341 5.0048 0.0022 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.2142 2.3184 0.0014 30 1 5.1315 2.5760 0.0006 31 1 4.4538 -0.2805 1.0271 32 1 3.7087 -0.7665 -0.5147 33 1 5.1989 0.2069 -0.5142 34 1 4.5512 5.2807 -0.7056 35 1 4.0454 5.4332 1.0033 36 1 2.9228 7.3490 1.0795 37 1 1.2033 9.3849 1.4817 38 1 2.5955 9.9686 0.5387 39 1 0.9004 13.0529 1.6219 40 1 0.9958 5.2727 1.0032 41 1 0.5079 5.0705 -0.7057 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143203505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:29 Heat of formation + Delta-G solvation = -85.339641 kcal Electronic energy + Delta-G solvation = -22034.618047 eV Core-core repulsion = 18685.072960 eV Total energy + Delta-G solvation = -3349.545087 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.69921 -40.54334 -39.29044 -36.83009 -35.08908 -34.42821 -32.54440 -31.28165 -30.33049 -28.88272 -27.72890 -26.61464 -25.45435 -23.04672 -22.02952 -21.53970 -21.13698 -18.54266 -18.40614 -17.92164 -17.42890 -17.14052 -16.69167 -16.31033 -16.09877 -15.74709 -15.35533 -14.98291 -14.66326 -14.40339 -14.24803 -14.13089 -13.93343 -13.73270 -13.44192 -13.10028 -12.98857 -12.84562 -12.74616 -12.63149 -12.49487 -12.33048 -12.23273 -12.04781 -11.68555 -11.45169 -11.42670 -10.62741 -10.52864 -10.02504 -9.69714 -8.89587 -8.25363 -6.32099 0.30346 0.40406 1.39298 1.40267 1.55015 1.88469 2.29980 2.35992 2.48961 2.66926 3.10127 3.32057 3.61396 3.85521 3.96966 4.02553 4.11150 4.27486 4.32255 4.34998 4.42995 4.58378 4.63825 4.69096 4.71217 4.72531 4.80902 4.88039 4.88393 5.00096 5.07850 5.11177 5.26581 5.28180 5.30792 5.48005 5.62450 5.65531 5.75506 5.82266 6.06767 6.40868 6.72330 6.85409 7.34305 7.52953 8.86979 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034005 B = 0.002790 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.220082 B =10032.564201 C =10571.660689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.325 6.325 3 C 0.114 3.886 4 C -0.201 4.201 5 C -0.071 4.071 6 C -0.132 4.132 7 C -0.068 4.068 8 C -0.128 4.128 9 C -0.098 4.098 10 C -0.069 4.069 11 C 0.145 3.855 12 H 0.076 0.924 13 N -0.717 5.717 14 C 0.521 3.479 15 O -0.583 6.583 16 C 0.007 3.993 17 C -0.535 4.535 18 H 0.054 0.946 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.963 3.037 22 H -0.276 1.276 23 H -0.272 1.272 24 H -0.272 1.272 25 C -0.092 4.092 26 H 0.123 0.877 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.133 0.867 30 H 0.154 0.846 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.413 0.587 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.267 0.733 40 H 0.084 0.916 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.452 -25.254 1.009 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.238 6.238 3 C 0.069 3.931 4 C -0.219 4.219 5 C -0.072 4.072 6 C -0.133 4.133 7 C -0.086 4.086 8 C -0.129 4.129 9 C -0.155 4.155 10 C -0.107 4.107 11 C 0.040 3.960 12 H 0.094 0.906 13 N -0.370 5.370 14 C 0.310 3.690 15 O -0.463 6.463 16 C -0.032 4.032 17 C -0.574 4.574 18 H 0.072 0.928 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.788 3.212 22 H -0.200 1.200 23 H -0.198 1.198 24 H -0.197 1.197 25 C -0.130 4.130 26 H 0.141 0.859 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.150 0.850 30 H 0.172 0.828 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.250 0.750 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.105 -25.416 0.392 26.141 hybrid contribution -1.005 1.109 0.021 1.496 sum 5.100 -24.307 0.414 24.840 Atomic orbital electron populations 1.23294 0.76971 1.05503 1.01788 1.86029 1.22857 1.26203 1.88756 1.18819 0.92297 0.84119 0.97861 1.20725 1.00592 0.91131 1.09484 1.20304 0.95069 0.93616 0.98209 1.20535 0.93572 0.95343 1.03853 1.20566 1.00817 0.89129 0.98046 1.19482 0.90638 0.97009 1.05761 1.20599 0.98917 0.93113 1.02858 1.21127 0.96529 0.89142 1.03859 1.21460 0.95206 0.82371 0.97006 0.90615 1.45994 1.49835 1.12133 1.29038 1.21466 0.76804 0.86418 0.84289 1.90519 1.45858 1.83341 1.26557 1.19086 0.98735 0.88943 0.96430 1.21409 1.28365 0.97832 1.09755 0.92781 1.25777 0.97560 0.99522 0.96036 1.70037 1.44688 1.19334 1.22398 0.85426 0.78752 0.78422 0.78620 1.20041 1.19782 1.19734 1.21411 0.98617 0.90783 1.02183 0.85895 0.92295 0.92479 0.84969 0.82828 0.90712 0.91676 0.90006 0.88508 0.87862 0.74971 0.93908 0.93762 0.92404 0.89817 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.32 -6.47 9.55 -92.38 -0.88 -7.36 16 3 C 0.11 2.55 6.66 22.48 0.15 2.70 16 4 C -0.20 -4.75 9.03 22.35 0.20 -4.54 16 5 C -0.07 -1.82 6.14 -19.59 -0.12 -1.94 16 6 C -0.13 -2.95 6.14 -19.51 -0.12 -3.07 16 7 C -0.07 -1.29 9.69 22.29 0.22 -1.07 16 8 C -0.13 -2.56 5.89 -19.80 -0.12 -2.68 16 9 C -0.10 -1.43 9.79 71.24 0.70 -0.73 16 10 C -0.07 -1.44 6.48 30.52 0.20 -1.25 16 11 C 0.14 4.20 3.36 45.90 0.15 4.36 16 12 H 0.08 2.54 7.71 -2.39 -0.02 2.52 16 13 N -0.72 -23.53 5.17 -438.25 -2.26 -25.80 16 14 C 0.52 23.65 7.82 87.66 0.69 24.34 16 15 O -0.58 -30.92 15.19 -3.04 -0.05 -30.96 16 16 C 0.01 0.38 5.46 29.10 0.16 0.54 16 17 C -0.54 -31.66 8.92 25.60 0.23 -31.43 16 18 H 0.05 3.38 6.75 -2.91 -0.02 3.36 16 19 C 0.01 0.55 5.46 84.65 0.46 1.01 16 20 N -0.92 -54.08 13.29 21.45 0.28 -53.79 16 21 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 25 C -0.09 -2.63 6.48 30.51 0.20 -2.43 16 26 H 0.12 0.99 8.14 -2.39 -0.02 0.98 16 27 H 0.06 0.74 7.66 -2.39 -0.02 0.73 16 28 H 0.06 0.74 7.66 -2.39 -0.02 0.73 16 29 H 0.13 2.78 6.29 -2.91 -0.02 2.76 16 30 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.00 7.54 -2.39 -0.02 0.98 16 33 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 34 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.10 1.80 7.78 -2.39 -0.02 1.78 16 36 H 0.41 10.95 8.37 -92.71 -0.78 10.18 16 37 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.04 2.27 8.14 -2.38 -0.02 2.26 16 39 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 40 H 0.08 2.40 8.08 -2.39 -0.02 2.38 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -72.19 342.32 3.49 -68.70 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.27 Total: 16.53 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 4.11 Total: -14.84 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -1.98 Total: -79.59 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -0.93 Total: -38.32 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -72.19 3.49 -68.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.644 kcal (2) G-P(sol) polarization free energy of solvation -72.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds