Wall clock time and date at job start Tue Mar 31 2020 06:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38546 * 119.80307 * 2 1 4 4 C 1.37787 * 120.29992 * 179.97438 * 3 2 1 5 5 C 1.39707 * 119.90930 * 0.02562 * 4 3 2 6 6 C 1.47528 * 120.19333 * 179.97438 * 5 4 3 7 7 O 1.21586 * 120.00062 * 179.97438 * 6 5 4 8 8 N 1.34783 * 120.00170 * 359.97438 * 6 5 4 9 9 C 1.46498 * 120.00437 * 180.02562 * 8 6 5 10 10 H 1.09009 * 109.40963 * 35.13643 * 9 8 6 11 11 C 1.52953 * 109.41478 * 154.99582 * 9 8 6 12 12 C 1.53236 * 109.41342 * 183.62593 * 11 9 8 13 13 C 1.51265 * 108.53501 * 305.39637 * 12 11 9 14 14 C 1.37879 * 120.83517 * 231.34808 * 13 12 11 15 15 N 1.31517 * 119.99840 * 179.97438 * 14 13 12 16 16 Si 1.86795 * 120.00341 * 359.97438 * 14 13 12 17 17 H 1.48500 * 109.47517 * 90.00198 * 16 14 13 18 18 H 1.48500 * 109.47104 * 210.00516 * 16 14 13 19 19 H 1.48501 * 109.47063 * 329.99729 * 16 14 13 20 20 C 1.51269 * 118.31229 * 51.32662 * 13 12 11 21 21 C 1.52955 * 109.35572 * 275.31941 * 9 8 6 22 22 C 1.40138 * 119.61512 * 0.25155 * 5 4 3 23 23 O 1.35652 * 120.15328 * 179.72649 * 22 5 4 24 24 C 1.38049 * 119.80615 * 179.97438 * 2 1 3 25 25 H 1.08994 * 109.47330 * 89.99840 * 1 2 3 26 26 H 1.09002 * 109.46706 * 210.00082 * 1 2 3 27 27 H 1.09003 * 109.47153 * 329.99300 * 1 2 3 28 28 H 1.08001 * 119.85072 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.04366 * 180.02562 * 4 3 2 30 30 H 0.97003 * 119.99491 * 0.02562 * 8 6 5 31 31 H 1.09002 * 109.48451 * 303.61539 * 11 9 8 32 32 H 1.08999 * 109.48225 * 63.64428 * 11 9 8 33 33 H 1.08999 * 109.62424 * 65.09982 * 12 11 9 34 34 H 1.08999 * 109.62149 * 185.66576 * 12 11 9 35 35 H 0.96999 * 120.00064 * 179.97438 * 15 14 13 36 36 H 1.09008 * 109.62116 * 188.94429 * 20 13 12 37 37 H 1.08990 * 109.78337 * 68.47155 * 20 13 12 38 38 H 1.09004 * 109.47741 * 296.30658 * 21 9 8 39 39 H 1.08995 * 109.48405 * 56.34402 * 21 9 8 40 40 H 0.96702 * 113.99747 * 89.99364 * 23 22 5 41 41 H 1.08009 * 119.95832 * 0.04737 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2022 0.0000 4 6 3.5735 1.2142 0.0005 5 6 4.2805 0.0092 0.0005 6 6 5.7558 0.0147 0.0005 7 8 6.3677 -1.0360 0.0010 8 7 6.4254 1.1845 0.0000 9 6 7.8904 1.1900 -0.0006 10 1 8.2556 0.3504 -0.5922 11 6 8.3937 2.4991 -0.6108 12 6 9.9234 2.4670 -0.6946 13 6 10.4742 2.1684 0.6822 14 6 11.4490 2.9669 1.2419 15 7 11.9159 2.6923 2.4403 16 14 12.1064 4.4387 0.2981 17 1 11.2906 5.6373 0.6189 18 1 13.5192 4.6836 0.6845 19 1 12.0324 4.1652 -1.1597 20 6 9.9282 0.9718 1.4293 21 6 8.3984 1.0584 1.4362 22 6 3.5803 -1.2046 -0.0054 23 8 4.2559 -2.3810 -0.0110 24 6 2.1932 -1.1979 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5140 28 1 1.6500 2.1342 -0.0004 29 1 4.1060 2.1537 0.0009 30 1 5.9372 2.0227 0.0000 31 1 7.9771 2.6177 -1.6111 32 1 8.0814 3.3354 0.0146 33 1 10.2356 1.6884 -1.3905 34 1 10.2917 3.4349 -1.0346 35 1 12.6019 3.2539 2.8340 36 1 10.3000 0.9792 2.4540 37 1 10.2407 0.0530 0.9332 38 1 8.0861 1.9289 2.0132 39 1 7.9852 0.1560 1.8867 40 1 4.4518 -2.7262 0.8708 41 1 1.6493 -2.1310 0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148506248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:54 Heat of formation + Delta-G solvation = -74.140653 kcal Electronic energy + Delta-G solvation = -22706.914468 eV Core-core repulsion = 19357.855006 eV Total energy + Delta-G solvation = -3349.059462 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.44700 -38.74690 -37.03371 -36.53481 -33.79317 -32.85804 -31.39531 -30.10416 -29.62867 -28.11480 -26.74365 -22.97048 -22.85403 -21.77459 -21.51811 -20.02436 -19.58648 -18.12758 -17.43913 -16.34018 -16.02510 -15.40110 -15.09648 -14.85835 -14.48213 -14.40495 -14.05604 -13.85083 -13.41863 -13.08134 -12.86001 -12.82143 -12.25666 -12.16991 -12.10499 -11.87685 -11.69810 -11.61531 -11.01050 -10.82972 -10.77538 -10.75913 -10.22420 -9.90495 -9.61038 -9.47095 -9.10246 -9.03559 -8.83525 -8.73738 -8.46555 -8.24311 -6.09442 -4.00588 0.68313 1.06274 2.94060 3.25280 3.34861 3.36142 3.53216 3.72339 4.09805 4.37662 4.50418 4.55831 4.81856 4.99880 5.06843 5.17664 5.24460 5.25799 5.41089 5.65515 5.66698 5.75016 5.89236 6.00190 6.12447 6.18047 6.23063 6.48242 6.53081 6.53736 6.71820 6.77982 6.83951 7.01207 7.10731 7.26504 7.40278 7.64972 7.65481 7.77377 7.86344 7.94526 8.40303 8.60832 8.97882 9.54547 11.00159 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032352 B = 0.003427 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.269319 B = 8168.690111 C = 8602.344650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.052 4.052 3 C -0.140 4.140 4 C -0.068 4.068 5 C -0.165 4.165 6 C 0.550 3.450 7 O -0.525 6.525 8 N -0.721 5.721 9 C 0.155 3.845 10 H 0.079 0.921 11 C -0.114 4.114 12 C -0.012 4.012 13 C -0.489 4.489 14 C 0.075 3.925 15 N -0.889 5.889 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.267 1.267 20 C 0.012 3.988 21 C -0.113 4.113 22 C 0.170 3.830 23 O -0.477 6.477 24 C -0.160 4.160 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.391 0.609 31 H 0.038 0.962 32 H 0.056 0.944 33 H 0.020 0.980 34 H 0.033 0.967 35 H 0.264 0.736 36 H 0.058 0.942 37 H 0.006 0.994 38 H 0.048 0.952 39 H 0.034 0.966 40 H 0.396 0.604 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.780 -2.094 -3.503 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.052 4.052 3 C -0.158 4.158 4 C -0.087 4.087 5 C -0.168 4.168 6 C 0.337 3.663 7 O -0.402 6.402 8 N -0.372 5.372 9 C 0.052 3.948 10 H 0.097 0.903 11 C -0.152 4.152 12 C -0.050 4.050 13 C -0.508 4.508 14 C -0.127 4.127 15 N -0.527 5.527 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.216 1.216 19 H -0.192 1.192 20 C -0.026 4.026 21 C -0.152 4.152 22 C 0.124 3.876 23 O -0.288 6.288 24 C -0.179 4.179 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.225 0.775 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.024 0.976 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.254 0.746 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.193 -2.746 -3.958 21.734 hybrid contribution 0.169 1.283 0.109 1.299 sum -21.024 -1.463 -3.849 21.423 Atomic orbital electron populations 1.20859 0.90689 1.03129 1.02711 1.19947 0.96312 0.92597 0.96345 1.20965 0.93850 0.97819 1.03209 1.21271 0.94326 0.96956 0.96109 1.20617 0.94328 0.93900 1.07983 1.18019 0.86336 0.84517 0.77457 1.90798 1.69239 1.31084 1.49045 1.46346 1.08823 1.07507 1.74485 1.21064 0.75884 0.99234 0.98590 0.90302 1.21874 0.99993 0.95707 0.97670 1.19702 0.90574 0.97221 0.97503 1.20052 1.20097 1.11261 0.99421 1.24857 0.95819 0.97349 0.94695 1.69843 1.28696 1.39017 1.15114 0.86662 0.78109 0.82976 0.80612 1.20460 1.21634 1.19189 1.19341 0.89015 0.94940 0.99297 1.21955 1.00338 0.98965 0.93928 1.18493 0.89339 0.85031 0.94778 1.84739 1.76256 1.34309 1.33537 1.21304 0.93042 0.98622 1.04900 0.90708 0.91253 0.91126 0.85292 0.85118 0.77543 0.94375 0.92553 0.96162 0.94828 0.92595 0.92372 0.97581 0.93297 0.94724 0.74640 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.00 36.01 0.36 -0.32 16 2 C -0.05 -0.46 5.88 -104.58 -0.62 -1.07 16 3 C -0.14 -1.27 9.67 -39.63 -0.38 -1.65 16 4 C -0.07 -0.74 9.53 -39.20 -0.37 -1.11 16 5 C -0.16 -2.30 5.89 -104.85 -0.62 -2.92 16 6 C 0.55 9.61 7.72 -12.47 -0.10 9.51 16 7 O -0.52 -11.07 14.82 -16.59 -0.25 -11.31 16 8 N -0.72 -11.94 5.02 -54.89 -0.28 -12.22 16 9 C 0.15 3.10 2.35 -67.98 -0.16 2.94 16 10 H 0.08 1.76 7.58 -51.92 -0.39 1.37 16 11 C -0.11 -2.23 5.40 -26.63 -0.14 -2.38 16 12 C -0.01 -0.27 5.59 -27.48 -0.15 -0.43 16 13 C -0.49 -12.91 5.51 -98.92 -0.55 -13.46 16 14 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 15 N -0.89 -25.68 12.73 55.43 0.71 -24.97 16 16 Si 0.89 20.91 27.27 -169.99 -4.64 16.27 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.08 6.46 56.52 0.37 -5.72 16 20 C 0.01 0.31 5.97 -27.49 -0.16 0.14 16 21 C -0.11 -2.52 5.50 -26.64 -0.15 -2.66 16 22 C 0.17 2.25 6.72 -38.69 -0.26 1.99 16 23 O -0.48 -6.67 11.58 -40.53 -0.47 -7.14 16 24 C -0.16 -1.65 9.62 -39.48 -0.38 -2.03 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 27 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 28 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.13 1.17 6.40 -52.49 -0.34 0.83 16 30 H 0.39 5.21 6.63 -40.82 -0.27 4.94 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.03 0.76 4.78 -51.93 -0.25 0.51 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.06 1.63 7.07 -51.92 -0.37 1.26 16 37 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.40 4.06 9.06 45.56 0.41 4.47 16 41 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 332.03 15.07 5.00 5.00 Total: -1.00 -32.52 332.03 -8.71 -41.23 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.02 Total: 4.62 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -3.78 Total: -11.49 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.43 Total: -37.19 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.72 Total: -18.45 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.64 Total: 16.27 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.52 -8.71 -41.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148506248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.911 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds