Wall clock time and date at job start Tue Mar 31 2020 06:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38546 * 119.80307 * 2 1 4 4 C 1.37787 * 120.29992 * 179.97438 * 3 2 1 5 5 C 1.39707 * 119.90930 * 0.02562 * 4 3 2 6 6 C 1.47528 * 120.19333 * 179.97438 * 5 4 3 7 7 O 1.21586 * 120.00062 * 179.97438 * 6 5 4 8 8 N 1.34783 * 120.00170 * 359.97438 * 6 5 4 9 9 C 1.46498 * 120.00437 * 180.02562 * 8 6 5 10 10 H 1.09009 * 109.40963 * 35.13643 * 9 8 6 11 11 C 1.52953 * 109.41478 * 154.99582 * 9 8 6 12 12 C 1.53236 * 109.41342 * 183.62593 * 11 9 8 13 13 C 1.51265 * 108.53501 * 305.39637 * 12 11 9 14 14 C 1.37879 * 120.83517 * 231.34808 * 13 12 11 15 15 N 1.31517 * 119.99840 * 179.97438 * 14 13 12 16 16 Si 1.86795 * 120.00341 * 359.97438 * 14 13 12 17 17 H 1.48500 * 109.47517 * 90.00198 * 16 14 13 18 18 H 1.48500 * 109.47104 * 210.00516 * 16 14 13 19 19 H 1.48501 * 109.47063 * 329.99729 * 16 14 13 20 20 C 1.51269 * 118.31229 * 51.32662 * 13 12 11 21 21 C 1.52955 * 109.35572 * 275.31941 * 9 8 6 22 22 C 1.40138 * 119.61512 * 0.25155 * 5 4 3 23 23 O 1.35652 * 120.15328 * 179.72649 * 22 5 4 24 24 C 1.38049 * 119.80615 * 179.97438 * 2 1 3 25 25 H 1.08994 * 109.47330 * 89.99840 * 1 2 3 26 26 H 1.09002 * 109.46706 * 210.00082 * 1 2 3 27 27 H 1.09003 * 109.47153 * 329.99300 * 1 2 3 28 28 H 1.08001 * 119.85072 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.04366 * 180.02562 * 4 3 2 30 30 H 0.97003 * 119.99491 * 0.02562 * 8 6 5 31 31 H 1.09002 * 109.48451 * 303.61539 * 11 9 8 32 32 H 1.08999 * 109.48225 * 63.64428 * 11 9 8 33 33 H 1.08999 * 109.62424 * 65.09982 * 12 11 9 34 34 H 1.08999 * 109.62149 * 185.66576 * 12 11 9 35 35 H 0.96999 * 120.00064 * 179.97438 * 15 14 13 36 36 H 1.09008 * 109.62116 * 188.94429 * 20 13 12 37 37 H 1.08990 * 109.78337 * 68.47155 * 20 13 12 38 38 H 1.09004 * 109.47741 * 296.30658 * 21 9 8 39 39 H 1.08995 * 109.48405 * 56.34402 * 21 9 8 40 40 H 0.96702 * 113.99747 * 89.99364 * 23 22 5 41 41 H 1.08009 * 119.95832 * 0.04737 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2022 0.0000 4 6 3.5735 1.2142 0.0005 5 6 4.2805 0.0092 0.0005 6 6 5.7558 0.0147 0.0005 7 8 6.3677 -1.0360 0.0010 8 7 6.4254 1.1845 0.0000 9 6 7.8904 1.1900 -0.0006 10 1 8.2556 0.3504 -0.5922 11 6 8.3937 2.4991 -0.6108 12 6 9.9234 2.4670 -0.6946 13 6 10.4742 2.1684 0.6822 14 6 11.4490 2.9669 1.2419 15 7 11.9159 2.6923 2.4403 16 14 12.1064 4.4387 0.2981 17 1 11.2906 5.6373 0.6189 18 1 13.5192 4.6836 0.6845 19 1 12.0324 4.1652 -1.1597 20 6 9.9282 0.9718 1.4293 21 6 8.3984 1.0584 1.4362 22 6 3.5803 -1.2046 -0.0054 23 8 4.2559 -2.3810 -0.0110 24 6 2.1932 -1.1979 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5140 28 1 1.6500 2.1342 -0.0004 29 1 4.1060 2.1537 0.0009 30 1 5.9372 2.0227 0.0000 31 1 7.9771 2.6177 -1.6111 32 1 8.0814 3.3354 0.0146 33 1 10.2356 1.6884 -1.3905 34 1 10.2917 3.4349 -1.0346 35 1 12.6019 3.2539 2.8340 36 1 10.3000 0.9792 2.4540 37 1 10.2407 0.0530 0.9332 38 1 8.0861 1.9289 2.0132 39 1 7.9852 0.1560 1.8867 40 1 4.4518 -2.7262 0.8708 41 1 1.6493 -2.1310 0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148506248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:52 Heat of formation + Delta-G solvation = -95.498805 kcal Electronic energy + Delta-G solvation = -22707.840627 eV Core-core repulsion = 19357.855006 eV Total energy + Delta-G solvation = -3349.985621 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.52973 -39.99798 -38.32418 -37.83415 -35.41007 -34.02071 -32.97593 -31.49562 -30.92234 -29.46953 -27.95852 -24.37125 -23.73410 -23.49892 -22.93878 -21.36337 -21.25765 -19.23118 -18.54997 -17.91079 -17.44171 -16.42507 -16.33955 -16.29729 -15.95129 -15.71123 -15.03784 -14.99782 -14.60553 -14.53324 -14.37313 -13.99503 -13.94545 -13.46376 -13.36779 -12.98877 -12.79984 -12.76317 -12.61561 -12.58161 -12.36702 -11.96651 -11.85018 -11.68479 -11.40303 -11.09043 -10.76682 -10.62850 -10.53869 -9.99784 -9.84128 -9.55387 -8.16682 -6.12957 -0.22088 0.27288 1.40819 1.43961 1.53418 1.87349 2.20367 2.41877 2.72127 3.11341 3.24767 3.68807 3.80120 3.96767 4.03444 4.20733 4.29062 4.35516 4.47032 4.59476 4.68498 4.71897 4.84807 4.88267 4.96897 4.97627 5.01416 5.11475 5.19286 5.21436 5.22684 5.25277 5.31240 5.52703 5.53960 5.56204 5.67249 5.74250 5.79329 5.82033 6.33069 6.63187 6.77986 6.92941 7.29920 7.45529 8.94875 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032352 B = 0.003427 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.269319 B = 8168.690111 C = 8602.344650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.041 4.041 3 C -0.137 4.137 4 C -0.065 4.065 5 C -0.195 4.195 6 C 0.547 3.453 7 O -0.573 6.573 8 N -0.709 5.709 9 C 0.167 3.833 10 H 0.052 0.948 11 C -0.105 4.105 12 C -0.016 4.016 13 C -0.502 4.502 14 C 0.019 3.981 15 N -0.934 5.934 16 Si 0.950 3.050 17 H -0.266 1.266 18 H -0.295 1.295 19 H -0.251 1.251 20 C 0.010 3.990 21 C -0.100 4.100 22 C 0.149 3.851 23 O -0.500 6.500 24 C -0.164 4.164 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.163 0.837 29 H 0.150 0.850 30 H 0.410 0.590 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.016 0.984 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.025 0.975 37 H -0.012 1.012 38 H 0.050 0.950 39 H 0.025 0.975 40 H 0.404 0.596 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.145 0.197 -5.039 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.042 4.042 3 C -0.154 4.154 4 C -0.084 4.084 5 C -0.199 4.199 6 C 0.336 3.664 7 O -0.453 6.453 8 N -0.361 5.361 9 C 0.063 3.937 10 H 0.070 0.930 11 C -0.143 4.143 12 C -0.054 4.054 13 C -0.521 4.521 14 C -0.179 4.179 15 N -0.574 5.574 16 Si 0.775 3.225 17 H -0.191 1.191 18 H -0.222 1.222 19 H -0.175 1.175 20 C -0.028 4.028 21 C -0.139 4.139 22 C 0.103 3.897 23 O -0.312 6.312 24 C -0.182 4.182 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.181 0.819 29 H 0.168 0.832 30 H 0.247 0.753 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.034 0.966 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.006 0.994 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.264 0.736 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -24.606 -0.429 -5.507 25.218 hybrid contribution 1.112 0.467 0.632 1.361 sum -23.494 0.037 -4.876 23.994 Atomic orbital electron populations 1.20958 0.88054 1.04503 1.03819 1.20414 0.98159 0.91933 0.93661 1.21378 0.93137 0.99312 1.01613 1.21510 0.95332 0.96344 0.95166 1.20440 0.91976 0.95720 1.11748 1.18628 0.87984 0.83753 0.76023 1.90767 1.70589 1.32696 1.51256 1.46031 1.07232 1.08506 1.74331 1.20642 0.78062 0.98856 0.96178 0.92981 1.21743 0.97443 0.95332 0.99782 1.19726 0.93030 0.97498 0.95135 1.20610 1.19843 1.10720 1.00962 1.25728 0.96193 1.00463 0.95518 1.70002 1.29752 1.40556 1.17078 0.85675 0.77127 0.79721 0.79989 1.19133 1.22230 1.17511 1.19281 0.91699 0.94626 0.97242 1.21744 0.97638 0.98525 0.95951 1.18838 0.90554 0.84493 0.95860 1.84692 1.76820 1.35031 1.34687 1.21502 0.91781 1.00243 1.04688 0.89507 0.90353 0.89416 0.81905 0.83243 0.75283 0.91021 0.91344 0.96565 0.93757 0.92754 0.95652 0.99388 0.93116 0.95625 0.73646 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.00 71.24 0.71 -0.13 16 2 C -0.04 -0.59 5.88 -19.83 -0.12 -0.70 16 3 C -0.14 -1.92 9.67 22.24 0.22 -1.70 16 4 C -0.06 -1.23 9.53 22.52 0.21 -1.01 16 5 C -0.20 -5.31 5.89 -20.01 -0.12 -5.43 16 6 C 0.55 19.23 7.72 86.69 0.67 19.90 16 7 O -0.57 -25.19 14.82 16.93 0.25 -24.94 16 8 N -0.71 -22.77 5.02 -445.84 -2.24 -25.00 16 9 C 0.17 6.64 2.35 44.96 0.11 6.75 16 10 H 0.05 2.38 7.58 -2.38 -0.02 2.36 16 11 C -0.10 -3.86 5.40 30.66 0.17 -3.69 16 12 C -0.02 -0.71 5.59 30.11 0.17 -0.54 16 13 C -0.50 -26.83 5.51 -16.17 -0.09 -26.92 16 14 C 0.02 1.05 5.46 84.65 0.46 1.51 16 15 N -0.93 -55.70 12.73 21.45 0.27 -55.43 16 16 Si 0.95 42.52 27.27 68.60 1.87 44.39 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 18 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 19 H -0.25 -10.50 6.46 99.48 0.64 -9.85 16 20 C 0.01 0.52 5.97 30.10 0.18 0.70 16 21 C -0.10 -4.56 5.50 30.65 0.17 -4.39 16 22 C 0.15 3.88 6.72 22.84 0.15 4.03 16 23 O -0.50 -14.50 11.58 -68.75 -0.80 -15.29 16 24 C -0.16 -3.06 9.62 22.34 0.21 -2.84 16 25 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.08 0.47 8.08 -2.39 -0.02 0.45 16 27 H 0.09 0.39 8.08 -2.39 -0.02 0.37 16 28 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 29 H 0.15 2.13 6.40 -2.91 -0.02 2.11 16 30 H 0.41 9.89 6.63 -92.71 -0.61 9.28 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.04 1.87 4.78 -2.39 -0.01 1.86 16 35 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 36 H 0.02 1.49 7.07 -2.38 -0.02 1.48 16 37 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 38 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.40 9.01 9.06 -74.06 -0.67 8.34 16 41 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -73.99 332.03 2.18 -71.81 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -0.29 Total: 18.93 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 3.11 Total: -14.47 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -1.97 Total: -80.43 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -0.54 Total: -40.23 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.87 Total: 44.39 kcal Total: -73.99 2.18 -71.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148506248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.688 kcal (2) G-P(sol) polarization free energy of solvation -73.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds