Wall clock time and date at job start Tue Mar 31 2020 07:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 110.64418 * 2 1 4 4 C 1.55154 * 110.72016 * 123.14472 * 2 1 3 5 5 C 1.54912 * 101.58502 * 154.03725 * 4 2 1 6 6 N 1.47423 * 104.82819 * 322.99480 * 5 4 2 7 7 C 1.34783 * 125.64234 * 204.08540 * 6 5 4 8 8 O 1.21280 * 119.99828 * 180.02562 * 7 6 5 9 9 C 1.50703 * 120.00235 * 0.02787 * 7 6 5 10 10 H 1.08999 * 109.46913 * 335.39577 * 9 7 6 11 11 C 1.50701 * 109.47265 * 95.39998 * 9 7 6 12 12 H 1.07997 * 119.99746 * 33.51490 * 11 9 7 13 13 C 1.37871 * 119.99660 * 213.51342 * 11 9 7 14 14 N 1.31518 * 119.99779 * 186.71528 * 13 11 9 15 15 Si 1.86796 * 120.00345 * 6.70895 * 13 11 9 16 16 H 1.48505 * 109.47280 * 85.24390 * 15 13 11 17 17 H 1.48503 * 109.47250 * 205.23942 * 15 13 11 18 18 H 1.48500 * 109.47486 * 325.24476 * 15 13 11 19 19 C 1.50696 * 109.46906 * 215.40125 * 9 7 6 20 20 C 1.38239 * 119.99952 * 112.94199 * 19 9 7 21 21 C 1.38237 * 119.99987 * 179.97438 * 20 19 9 22 22 C 1.38237 * 119.99835 * 0.08640 * 21 20 19 23 23 C 1.38234 * 120.00232 * 359.86803 * 22 21 20 24 24 C 1.38231 * 119.99845 * 0.09093 * 23 22 21 25 25 C 1.47019 * 108.70758 * 24.35091 * 6 5 4 26 26 H 1.09002 * 109.46789 * 298.31019 * 1 2 3 27 27 H 1.08996 * 109.47384 * 58.30820 * 1 2 3 28 28 H 1.09001 * 109.46986 * 178.31381 * 1 2 3 29 29 H 0.96705 * 114.00042 * 61.68634 * 3 2 1 30 30 H 1.09004 * 111.00453 * 35.96855 * 4 2 1 31 31 H 1.08997 * 111.03882 * 272.13088 * 4 2 1 32 32 H 1.08993 * 110.37143 * 204.15281 * 5 4 2 33 33 H 1.09007 * 110.45506 * 81.87190 * 5 4 2 34 34 H 0.96999 * 119.99860 * 180.02562 * 14 13 11 35 35 H 1.07996 * 120.00225 * 359.69989 * 20 19 9 36 36 H 1.08004 * 120.00053 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.99848 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.99617 * 180.02562 * 23 22 21 39 39 H 1.08004 * 119.99976 * 179.97438 * 24 23 22 40 40 H 1.08999 * 109.88342 * 118.13318 * 25 6 5 41 41 H 1.08999 * 109.87920 * 239.29595 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0338 1.3372 0.0000 4 6 2.0790 -0.7934 1.2151 5 6 3.4652 -1.2449 0.6913 6 7 3.2493 -1.5471 -0.7354 7 6 4.0004 -2.3786 -1.4845 8 8 3.7296 -2.5526 -2.6538 9 6 5.1765 -3.0921 -0.8692 10 1 5.5344 -2.5272 -0.0084 11 6 4.7531 -4.4688 -0.4259 12 1 4.0065 -5.0109 -0.9871 13 6 5.3190 -5.0361 0.6961 14 7 5.0496 -6.2849 1.0085 15 14 6.4685 -4.0312 1.7723 16 1 5.6720 -3.2478 2.7508 17 1 7.3886 -4.9422 2.4995 18 1 7.2586 -3.1045 0.9224 19 6 6.2813 -3.2098 -1.8872 20 6 7.4647 -2.5186 -1.7060 21 6 8.4784 -2.6270 -2.6397 22 6 8.3080 -3.4251 -3.7554 23 6 7.1250 -4.1170 -3.9361 24 6 6.1117 -4.0093 -3.0021 25 6 2.0831 -0.7864 -1.2073 26 1 -0.3633 0.4874 0.9048 27 1 -0.3634 0.5399 -0.8744 28 1 -0.3633 -1.0272 -0.0302 29 1 1.7804 1.8530 0.7777 30 1 1.4469 -1.6530 1.4382 31 1 2.1820 -0.1497 2.0886 32 1 3.7992 -2.1366 1.2216 33 1 4.1944 -0.4424 0.8029 34 1 5.4475 -6.6839 1.7981 35 1 7.5957 -1.8905 -0.8373 36 1 9.4028 -2.0867 -2.4983 37 1 9.0998 -3.5095 -4.4850 38 1 6.9921 -4.7409 -4.8077 39 1 5.1872 -4.5495 -3.1435 40 1 2.3847 -0.0961 -1.9951 41 1 1.3216 -1.4702 -1.5824 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156749269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:26 Heat of formation + Delta-G solvation = -60.004725 kcal Electronic energy + Delta-G solvation = -23644.937087 eV Core-core repulsion = 20296.490605 eV Total energy + Delta-G solvation = -3348.446482 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.92998 -38.68360 -37.45756 -35.06990 -33.60172 -31.65198 -31.28683 -30.08820 -29.47335 -28.05366 -26.29463 -23.61321 -22.71695 -21.79600 -21.01751 -20.25059 -18.62701 -17.12456 -16.82088 -16.32608 -15.92107 -15.74190 -14.90276 -14.58098 -14.43234 -14.08121 -13.82378 -13.40635 -13.22973 -12.87578 -12.72799 -12.59188 -12.43638 -12.32931 -12.11528 -11.94798 -11.73038 -11.48541 -11.36420 -11.06302 -10.96403 -10.70226 -10.46044 -10.22866 -9.99029 -9.91660 -9.58528 -8.86553 -8.72332 -8.10405 -8.08557 -7.78501 -6.28433 -4.30848 2.16817 2.24969 3.11123 3.24043 3.25147 3.53599 3.59848 4.05782 4.22861 4.45291 4.62550 4.68075 4.80358 5.04994 5.26724 5.35097 5.45680 5.57947 5.63776 5.66283 5.72136 5.80399 5.84489 5.90715 5.98029 6.03288 6.05824 6.07848 6.21232 6.26927 6.35658 6.47943 6.74817 6.85524 6.91742 7.20360 7.31739 7.32280 7.55508 7.64955 7.84081 8.09596 8.31057 8.75524 9.03321 9.29173 10.82922 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.006413 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.860303 B = 4364.828958 C = 5302.553298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.114 3.886 3 O -0.551 6.551 4 C -0.158 4.158 5 C 0.103 3.897 6 N -0.621 5.621 7 C 0.554 3.446 8 O -0.551 6.551 9 C 0.040 3.960 10 H 0.056 0.944 11 C -0.505 4.505 12 H 0.082 0.918 13 C 0.084 3.916 14 N -0.882 5.882 15 Si 0.859 3.141 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.253 1.253 19 C -0.042 4.042 20 C -0.132 4.132 21 C -0.134 4.134 22 C -0.141 4.141 23 C -0.134 4.134 24 C -0.065 4.065 25 C 0.123 3.877 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.375 0.625 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.269 0.731 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.071 0.929 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 12.239 1.366 12.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.073 3.927 3 O -0.357 6.357 4 C -0.196 4.196 5 C -0.020 4.020 6 N -0.357 5.357 7 C 0.345 3.655 8 O -0.428 6.428 9 C 0.018 3.982 10 H 0.074 0.926 11 C -0.542 4.542 12 H 0.101 0.899 13 C -0.120 4.120 14 N -0.517 5.517 15 Si 0.685 3.315 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.177 1.177 19 C -0.043 4.043 20 C -0.151 4.151 21 C -0.152 4.152 22 C -0.159 4.159 23 C -0.152 4.152 24 C -0.083 4.083 25 C 0.000 4.000 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.222 0.778 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.143 0.857 40 H 0.089 0.911 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.294 11.705 0.244 12.163 hybrid contribution 0.405 0.499 1.402 1.543 sum -2.890 12.204 1.646 12.649 Atomic orbital electron populations 1.22310 0.94371 1.03312 1.02575 1.22187 0.92572 0.82575 0.95367 1.86602 1.77714 1.23719 1.47633 1.23488 0.97533 1.01085 0.97514 1.22249 0.96537 1.01125 0.82112 1.48442 1.30524 1.45629 1.11071 1.20997 0.83529 0.75693 0.85240 1.90577 1.71872 1.63482 1.16896 1.18316 0.88625 0.97855 0.93370 0.92619 1.20477 1.25035 0.97032 1.11680 0.89950 1.24964 0.95353 0.94681 0.97018 1.69869 1.43534 1.11978 1.26334 0.87111 0.81952 0.81167 0.81223 1.19626 1.20957 1.17725 1.20164 0.95071 0.94265 0.94788 1.21047 0.94315 1.00558 0.99130 1.20878 0.98513 1.00468 0.95327 1.20887 0.97610 0.99287 0.98109 1.21076 0.94165 1.00414 0.99509 1.20998 0.98309 0.96373 0.92656 1.21716 0.89213 0.93819 0.95265 0.91958 0.91552 0.90965 0.77820 0.89366 0.89817 0.89406 0.91813 0.92134 0.87223 0.87295 0.87342 0.87056 0.85733 0.91053 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 8.86 37.16 0.33 -1.25 16 2 C 0.11 1.38 1.27 -88.78 -0.11 1.27 16 3 O -0.55 -6.43 13.08 -35.23 -0.46 -6.89 16 4 C -0.16 -1.92 6.25 -24.58 -0.15 -2.07 16 5 C 0.10 1.68 6.23 -2.53 -0.02 1.66 16 6 N -0.62 -11.96 3.33 -170.51 -0.57 -12.53 16 7 C 0.55 12.76 6.82 -10.98 -0.07 12.69 16 8 O -0.55 -13.93 15.53 5.56 0.09 -13.85 16 9 C 0.04 0.95 1.42 -94.08 -0.13 0.81 16 10 H 0.06 1.25 3.82 -51.93 -0.20 1.05 16 11 C -0.50 -13.57 8.16 -34.44 -0.28 -13.85 16 12 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 13 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 14 N -0.88 -25.48 13.96 55.43 0.77 -24.70 16 15 Si 0.86 19.69 27.04 -169.99 -4.60 15.10 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.25 -5.53 5.40 56.52 0.31 -5.22 16 19 C -0.04 -0.97 4.66 -104.62 -0.49 -1.45 16 20 C -0.13 -2.75 9.06 -39.58 -0.36 -3.11 16 21 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 22 C -0.14 -2.52 10.05 -39.58 -0.40 -2.92 16 23 C -0.13 -2.61 10.05 -39.59 -0.40 -3.01 16 24 C -0.07 -1.49 8.10 -39.58 -0.32 -1.81 16 25 C 0.12 2.00 6.24 -3.06 -0.02 1.98 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 29 H 0.37 2.62 9.10 45.56 0.41 3.03 16 30 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.58 7.45 -51.93 -0.39 1.19 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.11 2.12 7.27 -52.49 -0.38 1.74 16 36 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.12 3.02 7.48 -52.48 -0.39 2.62 16 40 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 41 H 0.08 1.23 7.80 -51.93 -0.41 0.82 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -32.38 335.48 -7.85 -40.22 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.22 Total: 9.31 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -2.92 Total: -11.72 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.21 Total: -37.23 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.37 Total: -20.73 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.60 Total: 15.10 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.38 -7.85 -40.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156749269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.780 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds