Wall clock time and date at job start Tue Mar 31 2020 07:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 110.64418 * 2 1 4 4 C 1.55154 * 110.72016 * 123.14472 * 2 1 3 5 5 C 1.54912 * 101.58502 * 154.03725 * 4 2 1 6 6 N 1.47423 * 104.82819 * 322.99480 * 5 4 2 7 7 C 1.34783 * 125.64234 * 204.08540 * 6 5 4 8 8 O 1.21280 * 119.99828 * 180.02562 * 7 6 5 9 9 C 1.50703 * 120.00235 * 0.02787 * 7 6 5 10 10 H 1.08999 * 109.46913 * 335.39577 * 9 7 6 11 11 C 1.50701 * 109.47265 * 95.39998 * 9 7 6 12 12 H 1.07997 * 119.99746 * 33.51490 * 11 9 7 13 13 C 1.37871 * 119.99660 * 213.51342 * 11 9 7 14 14 N 1.31518 * 119.99779 * 186.71528 * 13 11 9 15 15 Si 1.86796 * 120.00345 * 6.70895 * 13 11 9 16 16 H 1.48505 * 109.47280 * 85.24390 * 15 13 11 17 17 H 1.48503 * 109.47250 * 205.23942 * 15 13 11 18 18 H 1.48500 * 109.47486 * 325.24476 * 15 13 11 19 19 C 1.50696 * 109.46906 * 215.40125 * 9 7 6 20 20 C 1.38239 * 119.99952 * 112.94199 * 19 9 7 21 21 C 1.38237 * 119.99987 * 179.97438 * 20 19 9 22 22 C 1.38237 * 119.99835 * 0.08640 * 21 20 19 23 23 C 1.38234 * 120.00232 * 359.86803 * 22 21 20 24 24 C 1.38231 * 119.99845 * 0.09093 * 23 22 21 25 25 C 1.47019 * 108.70758 * 24.35091 * 6 5 4 26 26 H 1.09002 * 109.46789 * 298.31019 * 1 2 3 27 27 H 1.08996 * 109.47384 * 58.30820 * 1 2 3 28 28 H 1.09001 * 109.46986 * 178.31381 * 1 2 3 29 29 H 0.96705 * 114.00042 * 61.68634 * 3 2 1 30 30 H 1.09004 * 111.00453 * 35.96855 * 4 2 1 31 31 H 1.08997 * 111.03882 * 272.13088 * 4 2 1 32 32 H 1.08993 * 110.37143 * 204.15281 * 5 4 2 33 33 H 1.09007 * 110.45506 * 81.87190 * 5 4 2 34 34 H 0.96999 * 119.99860 * 180.02562 * 14 13 11 35 35 H 1.07996 * 120.00225 * 359.69989 * 20 19 9 36 36 H 1.08004 * 120.00053 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.99848 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.99617 * 180.02562 * 23 22 21 39 39 H 1.08004 * 119.99976 * 179.97438 * 24 23 22 40 40 H 1.08999 * 109.88342 * 118.13318 * 25 6 5 41 41 H 1.08999 * 109.87920 * 239.29595 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0338 1.3372 0.0000 4 6 2.0790 -0.7934 1.2151 5 6 3.4652 -1.2449 0.6913 6 7 3.2493 -1.5471 -0.7354 7 6 4.0004 -2.3786 -1.4845 8 8 3.7296 -2.5526 -2.6538 9 6 5.1765 -3.0921 -0.8692 10 1 5.5344 -2.5272 -0.0084 11 6 4.7531 -4.4688 -0.4259 12 1 4.0065 -5.0109 -0.9871 13 6 5.3190 -5.0361 0.6961 14 7 5.0496 -6.2849 1.0085 15 14 6.4685 -4.0312 1.7723 16 1 5.6720 -3.2478 2.7508 17 1 7.3886 -4.9422 2.4995 18 1 7.2586 -3.1045 0.9224 19 6 6.2813 -3.2098 -1.8872 20 6 7.4647 -2.5186 -1.7060 21 6 8.4784 -2.6270 -2.6397 22 6 8.3080 -3.4251 -3.7554 23 6 7.1250 -4.1170 -3.9361 24 6 6.1117 -4.0093 -3.0021 25 6 2.0831 -0.7864 -1.2073 26 1 -0.3633 0.4874 0.9048 27 1 -0.3634 0.5399 -0.8744 28 1 -0.3633 -1.0272 -0.0302 29 1 1.7804 1.8530 0.7777 30 1 1.4469 -1.6530 1.4382 31 1 2.1820 -0.1497 2.0886 32 1 3.7992 -2.1366 1.2216 33 1 4.1944 -0.4424 0.8029 34 1 5.4475 -6.6839 1.7981 35 1 7.5957 -1.8905 -0.8373 36 1 9.4028 -2.0867 -2.4983 37 1 9.0998 -3.5095 -4.4850 38 1 6.9921 -4.7409 -4.8077 39 1 5.1872 -4.5495 -3.1435 40 1 2.3847 -0.0961 -1.9951 41 1 1.3216 -1.4702 -1.5824 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156749269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:25 Heat of formation + Delta-G solvation = -83.258904 kcal Electronic energy + Delta-G solvation = -23645.945464 eV Core-core repulsion = 20296.490605 eV Total energy + Delta-G solvation = -3349.454859 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.40122 -40.10185 -38.96565 -36.33890 -35.52250 -33.45047 -32.48263 -31.64931 -30.65695 -29.68553 -27.65878 -25.38332 -24.08533 -23.37210 -22.45518 -21.40429 -20.23622 -19.11369 -18.16593 -17.87500 -17.33097 -16.87853 -16.71316 -16.13384 -15.79782 -15.59749 -15.16290 -15.02204 -14.64381 -14.21937 -14.15851 -14.02703 -13.85819 -13.77854 -13.54486 -13.32294 -13.03591 -12.89555 -12.75300 -12.52955 -12.32156 -12.12602 -12.00013 -11.72964 -11.65300 -11.52712 -10.91930 -10.78998 -10.64231 -9.66629 -9.65180 -9.40501 -8.38124 -6.47106 0.59604 0.67327 1.30442 1.36286 1.45740 1.77189 2.08954 2.29292 2.93033 3.08892 3.12833 3.45599 3.57675 3.85519 4.04105 4.13639 4.20495 4.24237 4.31064 4.35184 4.40079 4.47679 4.58483 4.66507 4.71441 4.77944 4.80020 4.88450 4.94645 4.99048 5.12887 5.18276 5.25143 5.30720 5.36428 5.42171 5.66870 5.72806 5.93600 6.16127 6.27470 6.48426 6.59786 6.92836 7.16705 7.27740 8.77430 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.006413 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.860303 B = 4364.828958 C = 5302.553298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.130 3.870 3 O -0.564 6.564 4 C -0.147 4.147 5 C 0.089 3.911 6 N -0.623 5.623 7 C 0.542 3.458 8 O -0.589 6.589 9 C 0.047 3.953 10 H 0.070 0.930 11 C -0.505 4.505 12 H 0.023 0.977 13 C 0.032 3.968 14 N -0.933 5.933 15 Si 0.922 3.078 16 H -0.241 1.241 17 H -0.286 1.286 18 H -0.233 1.233 19 C -0.074 4.074 20 C -0.145 4.145 21 C -0.126 4.126 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.099 4.099 25 C 0.111 3.889 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.399 0.601 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.271 0.729 35 H 0.126 0.874 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.133 0.867 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.693 15.531 2.863 15.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.089 3.911 3 O -0.373 6.373 4 C -0.185 4.185 5 C -0.033 4.033 6 N -0.356 5.356 7 C 0.333 3.667 8 O -0.470 6.470 9 C 0.026 3.974 10 H 0.088 0.912 11 C -0.543 4.543 12 H 0.042 0.958 13 C -0.168 4.168 14 N -0.571 5.571 15 Si 0.743 3.257 16 H -0.165 1.165 17 H -0.213 1.213 18 H -0.156 1.156 19 C -0.075 4.075 20 C -0.163 4.163 21 C -0.143 4.143 22 C -0.149 4.149 23 C -0.156 4.156 24 C -0.118 4.118 25 C -0.011 4.011 26 H 0.112 0.888 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.250 0.750 30 H 0.105 0.895 31 H 0.143 0.857 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.144 0.856 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.151 0.849 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.533 15.052 1.775 15.233 hybrid contribution -0.183 -0.534 0.799 0.978 sum -1.716 14.518 2.575 14.844 Atomic orbital electron populations 1.22272 0.91932 1.03493 1.04265 1.21954 0.93935 0.82528 0.92697 1.86551 1.78046 1.23314 1.49426 1.23526 0.94545 1.01709 0.98728 1.22556 0.99828 1.00831 0.80066 1.48512 1.30371 1.44378 1.12367 1.20990 0.84070 0.76468 0.85140 1.90533 1.72894 1.65025 1.18508 1.18174 0.89342 0.95760 0.94155 0.91220 1.20375 1.23962 0.98573 1.11350 0.95839 1.25844 0.97109 0.95645 0.98231 1.70027 1.45549 1.14177 1.27318 0.86115 0.79904 0.79963 0.79681 1.16495 1.21250 1.15620 1.20216 0.96051 0.96054 0.95181 1.21303 0.93839 1.00562 1.00568 1.21389 0.99150 0.99631 0.94148 1.21385 0.97450 0.97400 0.98672 1.21372 0.94113 1.00798 0.99283 1.20895 0.98318 0.97840 0.94710 1.21961 0.88052 0.93734 0.97386 0.88803 0.91437 0.91491 0.75027 0.89509 0.85688 0.91463 0.90113 0.91937 0.85635 0.82971 0.82934 0.84922 0.89621 0.92488 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 8.86 71.98 0.64 -1.98 16 2 C 0.13 2.87 1.27 -9.60 -0.01 2.86 16 3 O -0.56 -11.37 13.08 -148.98 -1.95 -13.32 16 4 C -0.15 -3.18 6.25 31.99 0.20 -2.98 16 5 C 0.09 2.81 6.23 86.86 0.54 3.35 16 6 N -0.62 -24.65 3.33 -811.77 -2.70 -27.34 16 7 C 0.54 26.46 6.82 87.66 0.60 27.06 16 8 O -0.59 -32.18 15.53 -3.03 -0.05 -32.23 16 9 C 0.05 2.32 1.42 -13.03 -0.02 2.30 16 10 H 0.07 3.12 3.82 -2.39 -0.01 3.11 16 11 C -0.51 -29.08 8.16 25.60 0.21 -28.87 16 12 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 13 C 0.03 1.77 5.47 84.65 0.46 2.24 16 14 N -0.93 -56.68 13.96 21.45 0.30 -56.38 16 15 Si 0.92 40.37 27.04 68.60 1.86 42.22 16 16 H -0.24 -9.37 7.11 99.48 0.71 -8.67 16 17 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.23 -9.37 5.40 99.48 0.54 -8.83 16 19 C -0.07 -3.51 4.66 -19.87 -0.09 -3.60 16 20 C -0.14 -5.74 9.06 22.27 0.20 -5.54 16 21 C -0.13 -4.12 10.05 22.27 0.22 -3.90 16 22 C -0.13 -4.26 10.05 22.27 0.22 -4.03 16 23 C -0.14 -5.34 10.05 22.27 0.22 -5.11 16 24 C -0.10 -4.78 8.10 22.27 0.18 -4.60 16 25 C 0.11 3.68 6.24 86.73 0.54 4.22 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.17 8.11 -2.39 -0.02 1.15 16 29 H 0.40 3.77 9.10 -74.05 -0.67 3.09 16 30 H 0.09 1.93 8.05 -2.38 -0.02 1.91 16 31 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 2.38 7.45 -2.39 -0.02 2.37 16 33 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.13 4.47 7.27 -2.91 -0.02 4.45 16 36 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 38 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.09 4.65 7.48 -2.91 -0.02 4.63 16 40 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 41 H 0.07 2.32 7.80 -2.39 -0.02 2.30 16 Total: -1.00 -78.14 335.48 1.77 -76.37 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.19 Total: 29.27 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 4.12 Total: -18.59 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -2.40 Total: -83.73 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -2.00 Total: -45.55 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 1.86 Total: 42.22 kcal Total: -78.14 1.77 -76.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156749269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.886 kcal (2) G-P(sol) polarization free energy of solvation -78.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds