Wall clock time and date at job start Tue Mar 31 2020 07:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 110.91173 * 2 1 4 4 C 1.55153 * 111.00936 * 236.09849 * 2 1 3 5 5 C 1.54326 * 102.94307 * 206.42374 * 4 2 1 6 6 N 1.47024 * 107.27165 * 22.19100 * 5 4 2 7 7 C 1.34767 * 125.64717 * 181.03874 * 6 5 4 8 8 O 1.21288 * 119.99906 * 180.02562 * 7 6 5 9 9 C 1.50697 * 120.00091 * 0.02562 * 7 6 5 10 10 H 1.09000 * 109.47472 * 299.99863 * 9 7 6 11 11 C 1.50700 * 109.46953 * 60.00208 * 9 7 6 12 12 H 1.08002 * 120.00313 * 29.40818 * 11 9 7 13 13 C 1.37878 * 120.00084 * 209.40407 * 11 9 7 14 14 N 1.31513 * 119.99749 * 6.08434 * 13 11 9 15 15 Si 1.86801 * 120.00002 * 186.08698 * 13 11 9 16 16 H 1.48501 * 109.47416 * 60.00153 * 15 13 11 17 17 H 1.48503 * 109.46822 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47234 * 299.99724 * 15 13 11 19 19 C 1.50708 * 109.46918 * 179.97438 * 9 7 6 20 20 C 1.38228 * 119.99948 * 293.66038 * 19 9 7 21 21 C 1.38239 * 120.00097 * 179.79051 * 20 19 9 22 22 C 1.38240 * 119.99301 * 0.43976 * 21 20 19 23 23 C 1.38233 * 120.00487 * 359.81362 * 22 21 20 24 24 C 1.38230 * 119.99624 * 359.97438 * 23 22 21 25 25 C 1.47432 * 108.70281 * 1.05810 * 6 5 4 26 26 H 1.08998 * 109.47417 * 296.10129 * 1 2 3 27 27 H 1.09004 * 109.47107 * 56.10152 * 1 2 3 28 28 H 1.09002 * 109.46881 * 176.09473 * 1 2 3 29 29 H 0.96700 * 114.00106 * 303.89764 * 3 2 1 30 30 H 1.09002 * 110.72032 * 88.05652 * 4 2 1 31 31 H 1.09004 * 110.86635 * 324.86027 * 4 2 1 32 32 H 1.08994 * 109.87748 * 262.77039 * 5 4 2 33 33 H 1.08996 * 110.00512 * 141.67962 * 5 4 2 34 34 H 0.96999 * 119.99956 * 180.02562 * 14 13 11 35 35 H 1.07997 * 120.00352 * 0.02562 * 20 19 9 36 36 H 1.07992 * 120.00758 * 180.27807 * 21 20 19 37 37 H 1.08011 * 119.99607 * 179.83133 * 22 21 20 38 38 H 1.07993 * 120.00188 * 179.97438 * 23 22 21 39 39 H 1.08008 * 119.99949 * 179.97438 * 24 23 22 40 40 H 1.08999 * 110.36262 * 94.70781 * 25 6 5 41 41 H 1.08990 * 110.36561 * 217.03051 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0401 1.3349 0.0000 4 6 2.0863 -0.8079 -1.2022 5 6 3.4676 -1.2740 -0.6959 6 7 3.4272 -1.2429 0.7735 7 6 4.4477 -1.5611 1.5942 8 8 4.3009 -1.4995 2.7965 9 6 5.7714 -1.9934 1.0179 10 1 5.6296 -2.8899 0.4144 11 6 6.3281 -0.8901 0.1555 12 1 6.0913 0.1402 0.3770 13 6 7.1399 -1.1957 -0.9162 14 7 7.3319 -2.4509 -1.2587 15 14 7.9671 0.1729 -1.8816 16 1 8.8472 0.9551 -0.9767 17 1 8.7807 -0.4152 -2.9759 18 1 6.9316 1.0668 -2.4595 19 6 6.7346 -2.2889 2.1387 20 6 7.1727 -1.2677 2.9608 21 6 8.0529 -1.5395 3.9916 22 6 8.5020 -2.8310 4.1943 23 6 8.0681 -3.8514 3.3688 24 6 7.1845 -3.5803 2.3409 25 6 2.0852 -0.8065 1.2004 26 1 -0.3634 0.4521 0.9228 27 1 -0.3633 0.5732 -0.8530 28 1 -0.3633 -1.0253 -0.0700 29 1 1.7202 1.8782 -0.7332 30 1 2.1923 -0.1699 -2.0796 31 1 1.4479 -1.6632 -1.4239 32 1 4.2426 -0.5996 -1.0598 33 1 3.6678 -2.2887 -1.0398 34 1 7.9033 -2.6660 -2.0124 35 1 6.8243 -0.2581 2.8004 36 1 8.3916 -0.7425 4.6368 37 1 9.1919 -3.0430 4.9979 38 1 8.4193 -4.8603 3.5270 39 1 6.8457 -4.3774 1.6957 40 1 1.4519 -1.6703 1.4025 41 1 2.1559 -0.1719 2.0837 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156749272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:33 Heat of formation + Delta-G solvation = -62.353265 kcal Electronic energy + Delta-G solvation = -23711.823877 eV Core-core repulsion = 20363.275555 eV Total energy + Delta-G solvation = -3348.548323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.69216 -38.43678 -37.22931 -34.84591 -33.61498 -31.37710 -30.96856 -29.88952 -29.24227 -27.76298 -25.93398 -23.86739 -22.41753 -21.53508 -20.72970 -20.19184 -18.45506 -16.93217 -16.58004 -16.00578 -15.75792 -15.19224 -14.71904 -14.56291 -14.21202 -14.07770 -13.66697 -13.50051 -13.05113 -12.54587 -12.51669 -12.37859 -12.21877 -12.08827 -11.99671 -11.60757 -11.42483 -11.33222 -11.06418 -10.97449 -10.82524 -10.58118 -10.34894 -10.23133 -9.98409 -9.77151 -9.40608 -8.70913 -8.54254 -7.90202 -7.80736 -7.56676 -6.23486 -4.26258 2.42385 2.45068 3.22867 3.28375 3.31880 3.72458 3.88198 4.16735 4.31803 4.62010 4.84512 4.88904 4.94781 5.13023 5.41255 5.49037 5.59526 5.76063 5.77066 5.83335 5.91391 5.92804 5.96982 6.02654 6.07097 6.25706 6.32392 6.44706 6.53992 6.64158 6.71821 6.92021 7.01087 7.15506 7.23683 7.41437 7.49869 7.67679 7.76796 7.81104 8.00834 8.11639 8.41524 8.74757 9.25889 9.36371 10.85144 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013938 B = 0.006626 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.463552 B = 4224.627517 C = 5482.914439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 O -0.543 6.543 4 C -0.160 4.160 5 C 0.116 3.884 6 N -0.610 5.610 7 C 0.543 3.457 8 O -0.568 6.568 9 C 0.056 3.944 10 H 0.087 0.913 11 C -0.507 4.507 12 H 0.062 0.938 13 C 0.076 3.924 14 N -0.879 5.879 15 Si 0.894 3.106 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.011 4.011 20 C -0.084 4.084 21 C -0.135 4.135 22 C -0.149 4.149 23 C -0.133 4.133 24 C -0.118 4.118 25 C 0.120 3.880 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.372 0.628 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.266 0.734 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.337 1.600 -0.939 9.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.070 3.930 3 O -0.348 6.348 4 C -0.198 4.198 5 C -0.007 4.007 6 N -0.344 5.344 7 C 0.335 3.665 8 O -0.447 6.447 9 C 0.035 3.965 10 H 0.105 0.895 11 C -0.545 4.545 12 H 0.080 0.920 13 C -0.129 4.129 14 N -0.515 5.515 15 Si 0.721 3.279 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.012 4.012 20 C -0.102 4.102 21 C -0.153 4.153 22 C -0.167 4.167 23 C -0.151 4.151 24 C -0.136 4.136 25 C -0.003 4.003 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.219 0.781 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.089 0.911 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.922 1.252 0.143 9.011 hybrid contribution 0.293 0.881 -1.244 1.553 sum -8.630 2.133 -1.101 8.957 Atomic orbital electron populations 1.22292 0.94789 1.02895 1.02578 1.22319 0.91863 0.83122 0.95672 1.86652 1.73110 1.22359 1.52690 1.23394 0.97877 1.00427 0.98100 1.21941 0.96355 1.02280 0.80159 1.48229 1.10996 1.68091 1.07093 1.21371 0.85002 0.74697 0.85389 1.90585 1.83500 1.55304 1.15354 1.18068 0.85873 1.00346 0.92179 0.89498 1.20575 1.30973 0.91850 1.11080 0.92025 1.24910 0.95818 0.95612 0.96560 1.69882 1.37047 1.16967 1.27560 0.86618 0.79856 0.82046 0.79419 1.19938 1.21149 1.19948 1.20046 0.95865 0.91869 0.93387 1.20839 0.96057 0.99168 0.94106 1.20953 0.99341 0.96183 0.98821 1.20793 1.01986 0.93534 1.00383 1.20886 0.99322 0.98116 0.96754 1.20975 0.98590 0.96609 0.97430 1.22002 0.85150 0.96611 0.96559 0.91673 0.92036 0.91269 0.78095 0.90205 0.90453 0.88938 0.91750 0.92374 0.87095 0.87610 0.87744 0.87593 0.87065 0.91109 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 8.98 37.16 0.33 -1.26 16 2 C 0.11 1.48 1.33 -88.47 -0.12 1.36 16 3 O -0.54 -7.81 13.20 -35.23 -0.47 -8.27 16 4 C -0.16 -2.08 6.15 -24.90 -0.15 -2.24 16 5 C 0.12 2.08 6.08 -3.06 -0.02 2.06 16 6 N -0.61 -12.35 3.32 -170.52 -0.57 -12.91 16 7 C 0.54 12.94 7.10 -10.99 -0.08 12.86 16 8 O -0.57 -14.76 15.69 5.55 0.09 -14.67 16 9 C 0.06 1.38 1.92 -94.07 -0.18 1.20 16 10 H 0.09 2.25 7.14 -51.93 -0.37 1.88 16 11 C -0.51 -12.90 5.40 -34.44 -0.19 -13.09 16 12 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 13 C 0.08 1.92 5.45 -17.82 -0.10 1.83 16 14 N -0.88 -23.11 12.85 55.43 0.71 -22.40 16 15 Si 0.89 20.19 29.54 -169.99 -5.02 15.16 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 C -0.01 -0.26 4.30 -104.62 -0.45 -0.71 16 20 C -0.08 -1.97 8.32 -39.58 -0.33 -2.30 16 21 C -0.13 -2.78 10.05 -39.58 -0.40 -3.17 16 22 C -0.15 -2.87 10.05 -39.58 -0.40 -3.27 16 23 C -0.13 -2.65 10.05 -39.59 -0.40 -3.04 16 24 C -0.12 -2.66 9.67 -39.59 -0.38 -3.04 16 25 C 0.12 2.02 6.11 -2.52 -0.02 2.00 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 29 H 0.37 3.56 9.07 45.56 0.41 3.97 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.86 8.00 -51.93 -0.42 0.45 16 32 H 0.09 1.90 6.58 -51.93 -0.34 1.56 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 35 H 0.11 2.67 7.88 -52.49 -0.41 2.25 16 36 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 38 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.11 2.41 7.96 -52.48 -0.42 2.00 16 40 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 41 H 0.08 1.45 8.04 -51.93 -0.42 1.03 16 LS Contribution 340.53 15.07 5.13 5.13 Total: -1.00 -30.89 340.53 -8.29 -39.19 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.31 Total: 9.57 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.87 Total: -10.79 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.15 Total: -35.31 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.38 Total: -22.95 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.89 -8.29 -39.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156749272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.168 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds