Wall clock time and date at job start Tue Mar 31 2020 07:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 110.91173 * 2 1 4 4 C 1.55153 * 111.00936 * 236.09849 * 2 1 3 5 5 C 1.54326 * 102.94307 * 206.42374 * 4 2 1 6 6 N 1.47024 * 107.27165 * 22.19100 * 5 4 2 7 7 C 1.34767 * 125.64717 * 181.03874 * 6 5 4 8 8 O 1.21288 * 119.99906 * 180.02562 * 7 6 5 9 9 C 1.50697 * 120.00091 * 0.02562 * 7 6 5 10 10 H 1.09000 * 109.47472 * 299.99863 * 9 7 6 11 11 C 1.50700 * 109.46953 * 60.00208 * 9 7 6 12 12 H 1.08002 * 120.00313 * 29.40818 * 11 9 7 13 13 C 1.37878 * 120.00084 * 209.40407 * 11 9 7 14 14 N 1.31513 * 119.99749 * 6.08434 * 13 11 9 15 15 Si 1.86801 * 120.00002 * 186.08698 * 13 11 9 16 16 H 1.48501 * 109.47416 * 60.00153 * 15 13 11 17 17 H 1.48503 * 109.46822 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47234 * 299.99724 * 15 13 11 19 19 C 1.50708 * 109.46918 * 179.97438 * 9 7 6 20 20 C 1.38228 * 119.99948 * 293.66038 * 19 9 7 21 21 C 1.38239 * 120.00097 * 179.79051 * 20 19 9 22 22 C 1.38240 * 119.99301 * 0.43976 * 21 20 19 23 23 C 1.38233 * 120.00487 * 359.81362 * 22 21 20 24 24 C 1.38230 * 119.99624 * 359.97438 * 23 22 21 25 25 C 1.47432 * 108.70281 * 1.05810 * 6 5 4 26 26 H 1.08998 * 109.47417 * 296.10129 * 1 2 3 27 27 H 1.09004 * 109.47107 * 56.10152 * 1 2 3 28 28 H 1.09002 * 109.46881 * 176.09473 * 1 2 3 29 29 H 0.96700 * 114.00106 * 303.89764 * 3 2 1 30 30 H 1.09002 * 110.72032 * 88.05652 * 4 2 1 31 31 H 1.09004 * 110.86635 * 324.86027 * 4 2 1 32 32 H 1.08994 * 109.87748 * 262.77039 * 5 4 2 33 33 H 1.08996 * 110.00512 * 141.67962 * 5 4 2 34 34 H 0.96999 * 119.99956 * 180.02562 * 14 13 11 35 35 H 1.07997 * 120.00352 * 0.02562 * 20 19 9 36 36 H 1.07992 * 120.00758 * 180.27807 * 21 20 19 37 37 H 1.08011 * 119.99607 * 179.83133 * 22 21 20 38 38 H 1.07993 * 120.00188 * 179.97438 * 23 22 21 39 39 H 1.08008 * 119.99949 * 179.97438 * 24 23 22 40 40 H 1.08999 * 110.36262 * 94.70781 * 25 6 5 41 41 H 1.08990 * 110.36561 * 217.03051 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0401 1.3349 0.0000 4 6 2.0863 -0.8079 -1.2022 5 6 3.4676 -1.2740 -0.6959 6 7 3.4272 -1.2429 0.7735 7 6 4.4477 -1.5611 1.5942 8 8 4.3009 -1.4995 2.7965 9 6 5.7714 -1.9934 1.0179 10 1 5.6296 -2.8899 0.4144 11 6 6.3281 -0.8901 0.1555 12 1 6.0913 0.1402 0.3770 13 6 7.1399 -1.1957 -0.9162 14 7 7.3319 -2.4509 -1.2587 15 14 7.9671 0.1729 -1.8816 16 1 8.8472 0.9551 -0.9767 17 1 8.7807 -0.4152 -2.9759 18 1 6.9316 1.0668 -2.4595 19 6 6.7346 -2.2889 2.1387 20 6 7.1727 -1.2677 2.9608 21 6 8.0529 -1.5395 3.9916 22 6 8.5020 -2.8310 4.1943 23 6 8.0681 -3.8514 3.3688 24 6 7.1845 -3.5803 2.3409 25 6 2.0852 -0.8065 1.2004 26 1 -0.3634 0.4521 0.9228 27 1 -0.3633 0.5732 -0.8530 28 1 -0.3633 -1.0253 -0.0700 29 1 1.7202 1.8782 -0.7332 30 1 2.1923 -0.1699 -2.0796 31 1 1.4479 -1.6632 -1.4239 32 1 4.2426 -0.5996 -1.0598 33 1 3.6678 -2.2887 -1.0398 34 1 7.9033 -2.6660 -2.0124 35 1 6.8243 -0.2581 2.8004 36 1 8.3916 -0.7425 4.6368 37 1 9.1919 -3.0430 4.9979 38 1 8.4193 -4.8603 3.5270 39 1 6.8457 -4.3774 1.6957 40 1 1.4519 -1.6703 1.4025 41 1 2.1559 -0.1719 2.0837 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156749272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:33 Heat of formation + Delta-G solvation = -82.876537 kcal Electronic energy + Delta-G solvation = -23712.713833 eV Core-core repulsion = 20363.275555 eV Total energy + Delta-G solvation = -3349.438278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24740 -39.96530 -38.83460 -36.27162 -35.50459 -32.95745 -32.45209 -31.56450 -30.51566 -29.40613 -27.35725 -25.67625 -23.87636 -23.21961 -22.28107 -21.41876 -20.14174 -18.76459 -17.98096 -17.75543 -17.28006 -16.59417 -16.41149 -16.18515 -15.80686 -15.60040 -15.22903 -14.93499 -14.30074 -14.07616 -14.04690 -13.84290 -13.68756 -13.59281 -13.31869 -13.25701 -12.97055 -12.85532 -12.77041 -12.49237 -12.21999 -12.08024 -11.97725 -11.74096 -11.63826 -11.30678 -10.86083 -10.67737 -10.44298 -9.58887 -9.46029 -9.29051 -8.21279 -6.29224 0.72872 0.77492 1.39325 1.42628 1.48697 1.87563 2.29452 2.41268 3.06435 3.12790 3.23534 3.55040 3.72688 3.93279 4.18648 4.27757 4.29108 4.37526 4.41744 4.46431 4.50571 4.64007 4.74740 4.81369 4.85027 4.94267 4.96682 5.00589 5.03759 5.12089 5.27829 5.29689 5.34796 5.41518 5.61305 5.64605 5.75660 5.81131 5.93206 6.21855 6.37910 6.67562 6.71436 6.94797 7.33818 7.43502 8.87031 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013938 B = 0.006626 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.463552 B = 4224.627517 C = 5482.914439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.120 3.880 3 O -0.572 6.572 4 C -0.145 4.145 5 C 0.111 3.889 6 N -0.611 5.611 7 C 0.533 3.467 8 O -0.600 6.600 9 C 0.062 3.938 10 H 0.064 0.936 11 C -0.506 4.506 12 H 0.042 0.958 13 C 0.041 3.959 14 N -0.901 5.901 15 Si 0.945 3.055 16 H -0.282 1.282 17 H -0.279 1.279 18 H -0.263 1.263 19 C -0.041 4.041 20 C -0.112 4.112 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.128 4.128 24 C -0.141 4.141 25 C 0.108 3.892 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.394 0.606 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.268 0.732 35 H 0.089 0.911 36 H 0.135 0.865 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.930 1.696 -1.269 10.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.079 3.921 3 O -0.381 6.381 4 C -0.183 4.183 5 C -0.012 4.012 6 N -0.344 5.344 7 C 0.325 3.675 8 O -0.482 6.482 9 C 0.041 3.959 10 H 0.082 0.918 11 C -0.544 4.544 12 H 0.060 0.940 13 C -0.162 4.162 14 N -0.538 5.538 15 Si 0.771 3.229 16 H -0.207 1.207 17 H -0.204 1.204 18 H -0.188 1.188 19 C -0.042 4.042 20 C -0.130 4.130 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.146 4.146 24 C -0.159 4.159 25 C -0.015 4.015 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.244 0.756 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.153 0.847 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.125 0.875 40 H 0.110 0.890 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.559 1.367 -0.232 9.659 hybrid contribution 0.482 0.838 -1.075 1.446 sum -9.076 2.205 -1.307 9.431 Atomic orbital electron populations 1.22225 0.91054 1.04422 1.03792 1.22305 0.94196 0.82270 0.93313 1.86600 1.74064 1.23158 1.54242 1.23395 0.94635 1.01739 0.98501 1.22006 0.99148 1.01128 0.78876 1.48301 1.11634 1.66458 1.07958 1.21289 0.85786 0.75090 0.85332 1.90533 1.84176 1.57016 1.16489 1.17912 0.86799 0.98961 0.92209 0.91805 1.20471 1.31289 0.91041 1.11564 0.93976 1.25461 0.96113 0.97391 0.97188 1.69971 1.37597 1.18235 1.28020 0.85801 0.79051 0.79840 0.78232 1.20742 1.20360 1.18785 1.20153 0.96697 0.93154 0.94173 1.20830 0.98098 0.98077 0.96020 1.21322 0.98038 0.98073 0.97865 1.21288 1.01517 0.92383 1.00743 1.21314 0.97703 1.00262 0.95274 1.21126 1.00017 0.95856 0.98908 1.22356 0.83757 0.97757 0.97595 0.91778 0.89340 0.89796 0.75600 0.87959 0.87583 0.91956 0.92806 0.92304 0.89265 0.84675 0.83274 0.83954 0.87463 0.89023 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 8.98 71.98 0.65 -1.79 16 2 C 0.12 2.98 1.33 -9.40 -0.01 2.96 16 3 O -0.57 -15.82 13.20 -148.98 -1.97 -17.78 16 4 C -0.14 -3.47 6.15 31.78 0.20 -3.28 16 5 C 0.11 4.10 6.08 86.73 0.53 4.63 16 6 N -0.61 -25.82 3.32 -811.81 -2.70 -28.51 16 7 C 0.53 27.01 7.10 87.66 0.62 27.63 16 8 O -0.60 -33.02 15.69 -3.05 -0.05 -33.07 16 9 C 0.06 3.26 1.92 -13.03 -0.02 3.23 16 10 H 0.06 3.56 7.14 -2.39 -0.02 3.54 16 11 C -0.51 -27.14 5.40 25.60 0.14 -27.00 16 12 H 0.04 2.37 7.82 -2.91 -0.02 2.35 16 13 C 0.04 2.13 5.45 84.66 0.46 2.59 16 14 N -0.90 -48.87 12.85 21.45 0.28 -48.59 16 15 Si 0.95 42.11 29.54 68.60 2.03 44.13 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 19 C -0.04 -2.08 4.30 -19.86 -0.09 -2.16 16 20 C -0.11 -5.47 8.32 22.27 0.19 -5.28 16 21 C -0.14 -5.44 10.05 22.27 0.22 -5.21 16 22 C -0.14 -5.07 10.05 22.27 0.22 -4.85 16 23 C -0.13 -4.88 10.05 22.27 0.22 -4.66 16 24 C -0.14 -6.50 9.67 22.27 0.22 -6.28 16 25 C 0.11 3.65 6.11 86.85 0.53 4.18 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.08 1.09 8.08 -2.39 -0.02 1.07 16 29 H 0.39 6.67 9.07 -74.06 -0.67 6.00 16 30 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.11 1.99 8.00 -2.39 -0.02 1.97 16 32 H 0.06 2.67 6.58 -2.39 -0.02 2.65 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 35 H 0.09 4.60 7.88 -2.91 -0.02 4.57 16 36 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 37 H 0.15 4.03 8.06 -2.90 -0.02 4.01 16 38 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 39 H 0.11 4.87 7.96 -2.91 -0.02 4.84 16 40 H 0.09 2.69 8.04 -2.39 -0.02 2.67 16 41 H 0.05 2.04 8.04 -2.39 -0.02 2.02 16 Total: -1.00 -71.43 340.53 2.01 -69.41 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.35 Total: 29.69 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 4.07 Total: -15.28 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -2.42 Total: -77.10 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -2.01 Total: -50.85 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -71.43 2.01 -69.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156749272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.465 kcal (2) G-P(sol) polarization free energy of solvation -71.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds