Wall clock time and date at job start Tue Mar 31 2020 06:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33072 * 1 3 3 C 1.50703 * 120.00235 * 2 1 4 4 C 1.46954 * 120.00124 * 179.97438 * 2 1 3 5 5 O 1.21537 * 119.99615 * 359.97438 * 4 2 1 6 6 O 1.34797 * 120.00255 * 180.02562 * 4 2 1 7 7 C 1.45204 * 117.00099 * 179.97438 * 6 4 2 8 8 C 1.52994 * 109.47070 * 179.97438 * 7 6 4 9 9 N 1.46504 * 109.46959 * 65.00385 * 8 7 6 10 10 C 1.38856 * 119.99913 * 179.97438 * 9 8 7 11 11 C 1.39580 * 119.84599 * 359.97438 * 10 9 8 12 12 C 1.36319 * 120.16678 * 179.97438 * 11 10 9 13 13 C 1.40909 * 119.83230 * 0.02562 * 12 11 10 14 14 C 1.41146 * 120.15475 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99930 * 154.55303 * 14 13 12 16 16 C 1.39862 * 119.99642 * 334.55906 * 14 13 12 17 17 N 1.30906 * 120.00423 * 343.02434 * 16 14 13 18 18 Si 1.86805 * 119.99657 * 163.02955 * 16 14 13 19 19 H 1.48494 * 109.46998 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47278 * 119.99579 * 18 16 14 21 21 H 1.48505 * 109.46686 * 239.99828 * 18 16 14 22 22 C 1.40865 * 119.69128 * 0.02562 * 13 12 11 23 23 C 1.36356 * 119.83408 * 359.71856 * 22 13 12 24 24 C 1.50698 * 119.91935 * 180.29599 * 23 22 13 25 25 H 1.07999 * 120.00666 * 179.97438 * 1 2 3 26 26 H 1.08010 * 120.00200 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.46874 * 269.99595 * 3 2 1 28 28 H 1.09003 * 109.46900 * 29.99848 * 3 2 1 29 29 H 1.09000 * 109.47316 * 149.99506 * 3 2 1 30 30 H 1.09000 * 109.46780 * 60.00173 * 7 6 4 31 31 H 1.08997 * 109.47112 * 299.99930 * 7 6 4 32 32 H 1.09003 * 109.47113 * 185.00177 * 8 7 6 33 33 H 1.08995 * 109.47602 * 305.00270 * 8 7 6 34 34 H 0.96998 * 120.00185 * 359.97438 * 9 8 7 35 35 H 1.08003 * 119.91873 * 359.97438 * 11 10 9 36 36 H 1.08002 * 120.08804 * 180.02562 * 12 11 10 37 37 H 0.97002 * 119.99569 * 180.02562 * 17 16 14 38 38 H 1.07993 * 120.08493 * 180.02562 * 22 13 12 39 39 H 1.08992 * 109.47470 * 270.23620 * 24 23 22 40 40 H 1.08993 * 109.47186 * 30.24326 * 24 23 22 41 41 H 1.09007 * 109.46816 * 150.23719 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3307 0.0000 0.0000 3 6 2.0843 1.3051 0.0000 4 6 2.0655 -1.2726 0.0006 5 8 1.4578 -2.3252 0.0015 6 8 3.4135 -1.2727 0.0011 7 6 4.0727 -2.5665 0.0022 8 6 5.5894 -2.3660 0.0020 9 7 5.9971 -1.7223 1.2533 10 6 7.3365 -1.4374 1.4833 11 6 8.2919 -1.7662 0.5203 12 6 9.6086 -1.4890 0.7390 13 6 10.0042 -0.8694 1.9412 14 6 11.3657 -0.5798 2.1749 15 1 11.6400 0.2206 2.8460 16 6 12.3595 -1.3294 1.5373 17 7 12.0636 -2.4856 0.9995 18 14 14.1093 -0.6807 1.4533 19 1 14.1811 0.6386 2.1312 20 1 15.0241 -1.6354 2.1291 21 1 14.5133 -0.5293 0.0323 22 6 9.0346 -0.5414 2.9090 23 6 7.7206 -0.8199 2.6744 24 6 6.6810 -0.4638 3.7056 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5401 0.9354 -0.0004 27 1 2.2660 1.6197 -1.0276 28 1 1.4952 2.0648 0.5138 29 1 3.0367 1.1748 0.5139 30 1 3.7801 -3.1240 -0.8875 31 1 3.7795 -3.1228 0.8924 32 1 6.0838 -3.3334 -0.0867 33 1 5.8725 -1.7347 -0.8403 34 1 5.3313 -1.4951 1.9212 35 1 7.9872 -2.2414 -0.4005 36 1 10.3467 -1.7436 -0.0072 37 1 12.7530 -3.0056 0.5576 38 1 9.3307 -0.0661 3.8324 39 1 6.5509 -1.2989 4.3938 40 1 7.0059 0.4167 4.2600 41 1 5.7343 -0.2514 3.2088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168073061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:37 Heat of formation + Delta-G solvation = -52.908834 kcal Electronic energy + Delta-G solvation = -22014.212939 eV Core-core repulsion = 18666.074157 eV Total energy + Delta-G solvation = -3348.138781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.55258 -38.30197 -36.95514 -35.04365 -34.91226 -33.27929 -31.29517 -30.11635 -28.08545 -27.51492 -25.76626 -24.81723 -23.94105 -22.46198 -19.99948 -19.97040 -19.67000 -17.51093 -16.89089 -16.72301 -16.56276 -15.98772 -15.11904 -14.88202 -14.27756 -13.98608 -13.78844 -13.52935 -13.32374 -13.07840 -12.79293 -12.71734 -12.48311 -12.45696 -12.01585 -11.84063 -11.75587 -11.50613 -11.42132 -11.03152 -10.85982 -10.78870 -10.67330 -10.57841 -10.37308 -9.79210 -9.62595 -9.28548 -9.22371 -8.52756 -7.33880 -6.60278 -6.34263 -4.02061 0.85951 2.52690 2.71325 2.91956 3.07013 3.16517 3.22020 3.35111 4.07202 4.24630 4.41934 4.57880 4.76515 4.86125 5.06916 5.09399 5.22995 5.35930 5.43038 5.64763 5.74656 5.82903 5.89083 5.92138 5.95671 6.08861 6.13266 6.28719 6.33162 6.36388 6.57270 6.88014 6.96495 7.24876 7.40511 7.55597 7.58119 7.73103 7.86737 8.17606 8.30777 8.48529 8.70303 8.81297 9.08266 9.17016 10.39996 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031270 B = 0.002925 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.200863 B = 9570.908274 C = 9864.388873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.154 4.154 3 C -0.117 4.117 4 C 0.498 3.502 5 O -0.515 6.515 6 O -0.341 6.341 7 C 0.059 3.941 8 C 0.140 3.860 9 N -0.758 5.758 10 C 0.098 3.902 11 C -0.164 4.164 12 C -0.124 4.124 13 C 0.076 3.924 14 C -0.466 4.466 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.809 5.809 18 Si 0.902 3.098 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.275 1.275 22 C -0.183 4.183 23 C -0.132 4.132 24 C -0.094 4.094 25 H 0.116 0.884 26 H 0.124 0.876 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.387 0.613 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.275 0.725 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.280 3.625 -3.020 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.155 4.155 3 C -0.173 4.173 4 C 0.344 3.656 5 O -0.406 6.406 6 O -0.257 6.257 7 C -0.015 4.015 8 C 0.014 3.986 9 N -0.396 5.396 10 C 0.001 3.999 11 C -0.186 4.186 12 C -0.144 4.144 13 C 0.073 3.927 14 C -0.498 4.498 15 H 0.090 0.910 16 C -0.141 4.141 17 N -0.437 5.437 18 Si 0.727 3.273 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.200 1.200 22 C -0.203 4.203 23 C -0.136 4.136 24 C -0.151 4.151 25 H 0.134 0.866 26 H 0.142 0.858 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.221 0.779 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.256 3.015 -3.316 17.829 hybrid contribution 0.625 -0.028 0.108 0.634 sum -16.632 2.987 -3.208 17.200 Atomic orbital electron populations 1.24732 0.94143 1.03837 0.90880 1.21052 0.94706 0.92962 1.06804 1.20818 1.00934 0.92473 1.03096 1.21483 0.81465 0.89997 0.72700 1.90847 1.69604 1.33789 1.46327 1.86667 1.20056 1.35563 1.83443 1.23444 0.92725 0.82300 1.03072 1.21115 0.89286 0.98509 0.89659 1.43856 1.05502 1.71110 1.19135 1.17123 0.82858 1.04236 0.95701 1.20069 0.93609 1.06989 0.97924 1.20927 0.93490 1.02147 0.97834 1.17481 0.92840 0.91922 0.90449 1.19383 0.90537 1.15422 1.24416 0.90969 1.25787 1.00893 0.93711 0.93685 1.69862 1.35247 1.09291 1.29298 0.86372 0.82268 0.80008 0.78632 1.18668 1.20315 1.20008 1.20449 0.91915 1.09073 0.98838 1.18632 0.94532 1.05704 0.94744 1.20481 0.97115 1.00156 0.97381 0.86574 0.85799 0.90772 0.91147 0.90196 0.90139 0.90687 0.90964 0.92169 0.77908 0.89392 0.86426 0.91442 0.89053 0.93282 0.92889 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 13.91 28.94 0.40 -0.32 16 2 C -0.15 -1.47 6.00 -102.89 -0.62 -2.09 16 3 C -0.12 -0.95 9.85 36.01 0.35 -0.59 16 4 C 0.50 6.30 7.88 34.26 0.27 6.57 16 5 O -0.52 -7.62 16.01 -19.29 -0.31 -7.93 16 6 O -0.34 -4.48 9.44 -40.76 -0.38 -4.86 16 7 C 0.06 0.73 5.61 37.15 0.21 0.94 16 8 C 0.14 2.02 5.28 -4.04 -0.02 2.00 16 9 N -0.76 -13.15 5.55 -58.50 -0.32 -13.48 16 10 C 0.10 2.11 6.65 -83.69 -0.56 1.56 16 11 C -0.16 -3.81 9.23 -39.77 -0.37 -4.17 16 12 C -0.12 -3.24 8.63 -39.26 -0.34 -3.58 16 13 C 0.08 2.05 5.57 -106.79 -0.59 1.46 16 14 C -0.47 -12.69 9.03 -37.87 -0.34 -13.03 16 15 H 0.07 1.91 7.90 -52.49 -0.41 1.49 16 16 C 0.07 1.92 5.15 -17.34 -0.09 1.83 16 17 N -0.81 -21.55 10.96 55.54 0.61 -20.94 16 18 Si 0.90 19.31 29.59 -169.99 -5.03 14.28 16 19 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 C -0.18 -4.51 9.37 -39.27 -0.37 -4.87 16 23 C -0.13 -2.92 5.86 -104.81 -0.61 -3.54 16 24 C -0.09 -1.66 9.55 36.00 0.34 -1.31 16 25 H 0.12 0.90 7.49 -52.49 -0.39 0.51 16 26 H 0.12 0.53 8.06 -52.48 -0.42 0.11 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 29 H 0.08 0.77 7.68 -51.93 -0.40 0.37 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 33 H 0.06 0.90 7.93 -51.93 -0.41 0.48 16 34 H 0.39 6.24 6.43 -40.82 -0.26 5.98 16 35 H 0.09 1.84 6.68 -52.48 -0.35 1.49 16 36 H 0.12 3.20 6.19 -52.49 -0.32 2.87 16 37 H 0.27 6.69 8.30 -40.82 -0.34 6.35 16 38 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 41 H 0.04 0.71 6.53 -51.92 -0.34 0.37 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -30.18 348.30 -8.34 -38.51 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.82 Total: 8.32 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -2.33 Total: -19.16 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.28 Total: -34.41 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.69 Total: -12.79 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.18 -8.34 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168073061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.394 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds