Wall clock time and date at job start Tue Mar 31 2020 06:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33072 * 1 3 3 C 1.50703 * 120.00235 * 2 1 4 4 C 1.46954 * 120.00124 * 179.97438 * 2 1 3 5 5 O 1.21537 * 119.99615 * 359.97438 * 4 2 1 6 6 O 1.34797 * 120.00255 * 180.02562 * 4 2 1 7 7 C 1.45204 * 117.00099 * 179.97438 * 6 4 2 8 8 C 1.52994 * 109.47070 * 179.97438 * 7 6 4 9 9 N 1.46504 * 109.46959 * 65.00385 * 8 7 6 10 10 C 1.38856 * 119.99913 * 179.97438 * 9 8 7 11 11 C 1.39580 * 119.84599 * 359.97438 * 10 9 8 12 12 C 1.36319 * 120.16678 * 179.97438 * 11 10 9 13 13 C 1.40909 * 119.83230 * 0.02562 * 12 11 10 14 14 C 1.41146 * 120.15475 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99930 * 154.55303 * 14 13 12 16 16 C 1.39862 * 119.99642 * 334.55906 * 14 13 12 17 17 N 1.30906 * 120.00423 * 343.02434 * 16 14 13 18 18 Si 1.86805 * 119.99657 * 163.02955 * 16 14 13 19 19 H 1.48494 * 109.46998 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47278 * 119.99579 * 18 16 14 21 21 H 1.48505 * 109.46686 * 239.99828 * 18 16 14 22 22 C 1.40865 * 119.69128 * 0.02562 * 13 12 11 23 23 C 1.36356 * 119.83408 * 359.71856 * 22 13 12 24 24 C 1.50698 * 119.91935 * 180.29599 * 23 22 13 25 25 H 1.07999 * 120.00666 * 179.97438 * 1 2 3 26 26 H 1.08010 * 120.00200 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.46874 * 269.99595 * 3 2 1 28 28 H 1.09003 * 109.46900 * 29.99848 * 3 2 1 29 29 H 1.09000 * 109.47316 * 149.99506 * 3 2 1 30 30 H 1.09000 * 109.46780 * 60.00173 * 7 6 4 31 31 H 1.08997 * 109.47112 * 299.99930 * 7 6 4 32 32 H 1.09003 * 109.47113 * 185.00177 * 8 7 6 33 33 H 1.08995 * 109.47602 * 305.00270 * 8 7 6 34 34 H 0.96998 * 120.00185 * 359.97438 * 9 8 7 35 35 H 1.08003 * 119.91873 * 359.97438 * 11 10 9 36 36 H 1.08002 * 120.08804 * 180.02562 * 12 11 10 37 37 H 0.97002 * 119.99569 * 180.02562 * 17 16 14 38 38 H 1.07993 * 120.08493 * 180.02562 * 22 13 12 39 39 H 1.08992 * 109.47470 * 270.23620 * 24 23 22 40 40 H 1.08993 * 109.47186 * 30.24326 * 24 23 22 41 41 H 1.09007 * 109.46816 * 150.23719 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3307 0.0000 0.0000 3 6 2.0843 1.3051 0.0000 4 6 2.0655 -1.2726 0.0006 5 8 1.4578 -2.3252 0.0015 6 8 3.4135 -1.2727 0.0011 7 6 4.0727 -2.5665 0.0022 8 6 5.5894 -2.3660 0.0020 9 7 5.9971 -1.7223 1.2533 10 6 7.3365 -1.4374 1.4833 11 6 8.2919 -1.7662 0.5203 12 6 9.6086 -1.4890 0.7390 13 6 10.0042 -0.8694 1.9412 14 6 11.3657 -0.5798 2.1749 15 1 11.6400 0.2206 2.8460 16 6 12.3595 -1.3294 1.5373 17 7 12.0636 -2.4856 0.9995 18 14 14.1093 -0.6807 1.4533 19 1 14.1811 0.6386 2.1312 20 1 15.0241 -1.6354 2.1291 21 1 14.5133 -0.5293 0.0323 22 6 9.0346 -0.5414 2.9090 23 6 7.7206 -0.8199 2.6744 24 6 6.6810 -0.4638 3.7056 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5401 0.9354 -0.0004 27 1 2.2660 1.6197 -1.0276 28 1 1.4952 2.0648 0.5138 29 1 3.0367 1.1748 0.5139 30 1 3.7801 -3.1240 -0.8875 31 1 3.7795 -3.1228 0.8924 32 1 6.0838 -3.3334 -0.0867 33 1 5.8725 -1.7347 -0.8403 34 1 5.3313 -1.4951 1.9212 35 1 7.9872 -2.2414 -0.4005 36 1 10.3467 -1.7436 -0.0072 37 1 12.7530 -3.0056 0.5576 38 1 9.3307 -0.0661 3.8324 39 1 6.5509 -1.2989 4.3938 40 1 7.0059 0.4167 4.2600 41 1 5.7343 -0.2514 3.2088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168073061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:36 Heat of formation + Delta-G solvation = -68.896669 kcal Electronic energy + Delta-G solvation = -22014.906223 eV Core-core repulsion = 18666.074157 eV Total energy + Delta-G solvation = -3348.832066 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.52174 -40.02172 -38.04813 -36.61807 -35.65391 -34.97823 -33.04782 -31.65759 -29.67822 -28.12229 -27.47959 -26.15452 -25.36217 -23.69547 -21.80650 -21.63419 -20.53614 -18.74706 -18.45899 -18.06732 -17.57240 -17.25916 -16.76030 -16.45458 -15.43213 -15.36667 -14.82316 -14.75377 -14.50946 -14.37949 -14.17321 -13.94211 -13.76710 -13.61750 -13.43900 -13.29868 -13.14772 -12.86957 -12.72440 -12.56840 -12.43583 -12.28786 -12.16608 -11.76811 -11.60061 -11.45580 -11.14471 -11.05450 -10.42236 -10.29883 -9.20630 -8.51375 -8.10621 -5.99431 0.12612 1.12383 1.18195 1.40470 1.54679 1.58216 1.64084 1.88403 2.28373 2.83132 2.86940 3.57151 3.79305 3.84389 3.97947 4.04274 4.27580 4.37337 4.44483 4.53334 4.63378 4.69485 4.75216 4.82352 4.84714 4.93596 5.03843 5.09777 5.11219 5.14252 5.24940 5.32858 5.34099 5.52496 5.54543 5.71715 5.89647 6.00727 6.22794 6.43100 6.62955 6.68386 6.88138 7.10963 7.13967 7.31144 8.50634 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031270 B = 0.002925 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.200863 B = 9570.908274 C = 9864.388873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.184 4.184 3 C -0.110 4.110 4 C 0.495 3.505 5 O -0.545 6.545 6 O -0.350 6.350 7 C 0.065 3.935 8 C 0.138 3.862 9 N -0.749 5.749 10 C 0.114 3.886 11 C -0.174 4.174 12 C -0.146 4.146 13 C 0.037 3.963 14 C -0.505 4.505 15 H 0.066 0.934 16 C 0.031 3.969 17 N -0.843 5.843 18 Si 0.976 3.024 19 H -0.261 1.261 20 H -0.269 1.269 21 H -0.267 1.267 22 C -0.194 4.194 23 C -0.142 4.142 24 C -0.089 4.089 25 H 0.110 0.890 26 H 0.161 0.839 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.396 0.604 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.281 0.719 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.445 4.434 -2.973 20.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.185 4.185 3 C -0.167 4.167 4 C 0.342 3.658 5 O -0.438 6.438 6 O -0.266 6.266 7 C -0.009 4.009 8 C 0.014 3.986 9 N -0.386 5.386 10 C 0.014 3.986 11 C -0.196 4.196 12 C -0.167 4.167 13 C 0.034 3.966 14 C -0.536 4.536 15 H 0.084 0.916 16 C -0.181 4.181 17 N -0.472 5.472 18 Si 0.798 3.202 19 H -0.185 1.185 20 H -0.194 1.194 21 H -0.192 1.192 22 C -0.214 4.214 23 C -0.146 4.146 24 C -0.146 4.146 25 H 0.128 0.872 26 H 0.179 0.821 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.231 0.769 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.467 3.827 -3.269 20.107 hybrid contribution 1.023 -0.302 0.089 1.070 sum -18.444 3.525 -3.180 19.046 Atomic orbital electron populations 1.25082 0.93286 1.05297 0.86737 1.21152 0.95393 0.92018 1.09975 1.20782 1.00189 0.92362 1.03359 1.22118 0.81068 0.90891 0.71682 1.90828 1.69846 1.34997 1.48114 1.86664 1.20731 1.35668 1.83568 1.23343 0.91142 0.82447 1.03999 1.21233 0.90910 0.98396 0.88089 1.43897 1.03900 1.70380 1.20395 1.17236 0.84434 1.02082 0.94799 1.20245 0.92943 1.07139 0.99239 1.20840 0.94436 1.03788 0.97599 1.17810 0.93619 0.93583 0.91552 1.19592 0.91630 1.16305 1.26076 0.91609 1.26597 1.04974 0.93555 0.92949 1.69927 1.36818 1.10282 1.30138 0.85262 0.76824 0.79285 0.78876 1.18486 1.19424 1.19173 1.20649 0.92958 1.09205 0.98615 1.19090 0.94729 1.04744 0.96012 1.20489 0.96454 1.01088 0.96523 0.87200 0.82142 0.90508 0.88857 0.92189 0.88594 0.90425 0.90321 0.92329 0.76863 0.87467 0.88442 0.90873 0.88803 0.91958 0.91844 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 13.91 66.66 0.93 0.17 16 2 C -0.18 -3.11 6.00 -18.74 -0.11 -3.22 16 3 C -0.11 -1.54 9.85 71.24 0.70 -0.84 16 4 C 0.49 11.83 7.88 70.11 0.55 12.38 16 5 O -0.55 -15.52 16.01 19.72 0.32 -15.20 16 6 O -0.35 -8.67 9.44 -57.08 -0.54 -9.21 16 7 C 0.06 1.49 5.61 71.98 0.40 1.89 16 8 C 0.14 3.76 5.28 86.38 0.46 4.22 16 9 N -0.75 -24.53 5.55 -338.99 -1.88 -26.41 16 10 C 0.11 4.81 6.65 38.67 0.26 5.07 16 11 C -0.17 -8.11 9.23 22.15 0.20 -7.91 16 12 C -0.15 -7.96 8.63 22.48 0.19 -7.77 16 13 C 0.04 2.09 5.57 -21.27 -0.12 1.97 16 14 C -0.50 -28.68 9.03 23.38 0.21 -28.47 16 15 H 0.07 3.65 7.90 -2.91 -0.02 3.62 16 16 C 0.03 1.64 5.15 85.22 0.44 2.08 16 17 N -0.84 -46.51 10.96 21.82 0.24 -46.28 16 18 Si 0.98 40.62 29.59 68.60 2.03 42.65 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 C -0.19 -9.77 9.37 22.47 0.21 -9.56 16 23 C -0.14 -6.14 5.86 -19.99 -0.12 -6.26 16 24 C -0.09 -2.90 9.55 71.24 0.68 -2.22 16 25 H 0.11 1.43 7.49 -2.91 -0.02 1.40 16 26 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 27 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 0.83 8.07 -2.39 -0.02 0.81 16 29 H 0.06 1.07 7.68 -2.39 -0.02 1.05 16 30 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 2.09 7.92 -2.39 -0.02 2.08 16 33 H 0.06 1.65 7.93 -2.39 -0.02 1.63 16 34 H 0.40 11.74 6.43 -92.71 -0.60 11.14 16 35 H 0.11 4.46 6.68 -2.91 -0.02 4.44 16 36 H 0.10 5.59 6.19 -2.91 -0.02 5.57 16 37 H 0.28 14.08 8.30 -92.71 -0.77 13.31 16 38 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 41 H 0.07 1.87 6.53 -2.38 -0.02 1.86 16 Total: -1.00 -67.86 348.30 5.49 -62.37 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.44 Total: 30.55 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 4.89 Total: -38.47 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -1.64 Total: -72.69 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.22 Total: -24.41 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -67.86 5.49 -62.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168073061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.529 kcal (2) G-P(sol) polarization free energy of solvation -67.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds