Wall clock time and date at job start Tue Mar 31 2020 06:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33079 * 1 3 3 C 1.50703 * 119.99731 * 2 1 4 4 C 1.46944 * 120.00194 * 179.97438 * 2 1 3 5 5 O 1.21533 * 120.00345 * 0.02562 * 4 2 1 6 6 O 1.34797 * 120.00045 * 180.02562 * 4 2 1 7 7 C 1.45206 * 117.00291 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47430 * 180.02562 * 7 6 4 9 9 N 1.46500 * 109.47365 * 64.99678 * 8 7 6 10 10 C 1.38856 * 120.00068 * 180.02562 * 9 8 7 11 11 C 1.39592 * 119.84282 * 0.02562 * 10 9 8 12 12 C 1.36318 * 120.15852 * 179.97438 * 11 10 9 13 13 C 1.40896 * 119.84133 * 0.02562 * 12 11 10 14 14 C 1.41145 * 120.15994 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99693 * 153.66531 * 14 13 12 16 16 C 1.39858 * 119.99789 * 333.67023 * 14 13 12 17 17 N 1.30909 * 119.99920 * 343.79160 * 16 14 13 18 18 Si 1.86801 * 120.00068 * 163.79606 * 16 14 13 19 19 H 1.48494 * 109.46949 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47269 * 119.99731 * 18 16 14 21 21 H 1.48505 * 109.46753 * 239.99601 * 18 16 14 22 22 C 1.40869 * 119.68664 * 359.97438 * 13 12 11 23 23 C 1.50702 * 120.08290 * 180.02562 * 22 13 12 24 24 C 1.36355 * 119.83890 * 359.71955 * 22 13 12 25 25 H 1.08005 * 119.99961 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.00472 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46641 * 269.99405 * 3 2 1 28 28 H 1.08996 * 109.47224 * 29.99234 * 3 2 1 29 29 H 1.09000 * 109.47338 * 149.99687 * 3 2 1 30 30 H 1.09003 * 109.47115 * 59.99975 * 7 6 4 31 31 H 1.09001 * 109.47094 * 300.00397 * 7 6 4 32 32 H 1.09000 * 109.47075 * 185.00025 * 8 7 6 33 33 H 1.08998 * 109.46876 * 304.99721 * 8 7 6 34 34 H 0.97000 * 119.99843 * 0.02562 * 9 8 7 35 35 H 1.07998 * 119.91822 * 359.97438 * 11 10 9 36 36 H 1.08002 * 120.08119 * 180.02562 * 12 11 10 37 37 H 0.96999 * 119.99939 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.47755 * 89.99613 * 23 22 13 39 39 H 1.09000 * 109.47549 * 210.00246 * 23 22 13 40 40 H 1.09007 * 109.47219 * 329.99792 * 23 22 13 41 41 H 1.07999 * 119.92452 * 180.29615 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3308 0.0000 0.0000 3 6 2.0842 1.3052 0.0000 4 6 2.0655 -1.2725 0.0006 5 8 1.4580 -2.3251 0.0006 6 8 3.4135 -1.2725 0.0011 7 6 4.0728 -2.5662 0.0011 8 6 5.5896 -2.3658 0.0023 9 7 5.9963 -1.7235 1.2547 10 6 7.3354 -1.4379 1.4855 11 6 8.2913 -1.7637 0.5219 12 6 9.6077 -1.4858 0.7416 13 6 10.0025 -0.8687 1.9451 14 6 11.3637 -0.5783 2.1798 15 1 11.6370 0.2301 2.8417 16 6 12.3584 -1.3375 1.5552 17 7 12.0592 -2.4932 1.0178 18 14 14.1139 -0.7026 1.4877 19 1 14.1888 0.6182 2.1622 20 1 15.0141 -1.6621 2.1761 21 1 14.5341 -0.5590 0.0706 22 6 9.0324 -0.5428 2.9131 23 6 9.4447 0.1180 4.2032 24 6 7.7185 -0.8209 2.6772 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 2.2659 1.6197 -1.0277 28 1 1.4951 2.0648 0.5137 29 1 3.0366 1.1749 0.5139 30 1 3.7803 -3.1231 -0.8892 31 1 3.7796 -3.1235 0.8908 32 1 6.0840 -3.3330 -0.0873 33 1 5.8732 -1.7335 -0.8390 34 1 5.3301 -1.4978 1.9226 35 1 7.9872 -2.2371 -0.4000 36 1 10.3461 -1.7380 -0.0051 37 1 12.7492 -3.0199 0.5849 38 1 9.4216 1.2007 4.0806 39 1 8.7561 -0.1726 4.9966 40 1 10.4549 -0.1965 4.4658 41 1 6.9730 -0.5673 3.4163 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168073948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:14 Heat of formation + Delta-G solvation = -54.201191 kcal Electronic energy + Delta-G solvation = -21875.593471 eV Core-core repulsion = 18527.398649 eV Total energy + Delta-G solvation = -3348.194822 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.54984 -38.17719 -36.98250 -35.17457 -34.92484 -33.13438 -31.18944 -30.09098 -27.91667 -27.50366 -26.11588 -24.55755 -23.91071 -22.23242 -20.86204 -19.68439 -19.11179 -17.50583 -17.09101 -16.74627 -16.53633 -15.81943 -15.04097 -14.83944 -14.26210 -13.95660 -13.85833 -13.60072 -13.28809 -13.07891 -12.73876 -12.63745 -12.51950 -12.40841 -12.00995 -11.80412 -11.63591 -11.37103 -11.08102 -11.04040 -10.87986 -10.87548 -10.67485 -10.57991 -10.40516 -9.78980 -9.53257 -9.24265 -9.18584 -8.46643 -7.31456 -6.61116 -6.35455 -4.01563 0.86097 2.52910 2.71543 2.90853 3.08293 3.16352 3.21480 3.36308 4.06809 4.24306 4.42101 4.58090 4.78069 4.86199 5.07116 5.09618 5.23174 5.36090 5.43251 5.64956 5.74404 5.83441 5.89530 5.93365 6.13587 6.26293 6.27944 6.31119 6.47404 6.73239 6.75011 6.92291 7.03657 7.24795 7.38212 7.57222 7.62592 7.76680 7.83952 8.16937 8.32458 8.49733 8.70421 8.80635 9.08644 9.17600 10.40154 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030135 B = 0.002877 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.920908 B = 9730.436072 C =10116.058030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.154 4.154 3 C -0.117 4.117 4 C 0.498 3.502 5 O -0.515 6.515 6 O -0.341 6.341 7 C 0.059 3.941 8 C 0.141 3.859 9 N -0.759 5.759 10 C 0.097 3.903 11 C -0.169 4.169 12 C -0.120 4.120 13 C 0.077 3.923 14 C -0.462 4.462 15 H 0.075 0.925 16 C 0.073 3.927 17 N -0.809 5.809 18 Si 0.901 3.099 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.275 1.275 22 C -0.157 4.157 23 C -0.085 4.085 24 C -0.157 4.157 25 H 0.116 0.884 26 H 0.124 0.876 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.386 0.614 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.275 0.725 38 H 0.041 0.959 39 H 0.036 0.964 40 H 0.062 0.938 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.321 3.774 -2.912 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.155 4.155 3 C -0.173 4.173 4 C 0.344 3.656 5 O -0.406 6.406 6 O -0.257 6.257 7 C -0.015 4.015 8 C 0.015 3.985 9 N -0.396 5.396 10 C 0.000 4.000 11 C -0.191 4.191 12 C -0.140 4.140 13 C 0.074 3.926 14 C -0.493 4.493 15 H 0.093 0.907 16 C -0.141 4.141 17 N -0.437 5.437 18 Si 0.726 3.274 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.200 1.200 22 C -0.159 4.159 23 C -0.142 4.142 24 C -0.179 4.179 25 H 0.134 0.866 26 H 0.142 0.858 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.218 0.782 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.288 3.162 -3.209 16.899 hybrid contribution 0.534 -0.046 0.082 0.542 sum -15.754 3.116 -3.127 16.360 Atomic orbital electron populations 1.24734 0.94142 1.03835 0.90885 1.21052 0.94706 0.92968 1.06798 1.20818 1.00943 0.92468 1.03092 1.21477 0.81466 0.89992 0.72695 1.90846 1.69618 1.33782 1.46338 1.86667 1.20053 1.35560 1.83437 1.23442 0.92708 0.82301 1.03072 1.21104 0.89295 0.98483 0.89582 1.43773 1.05427 1.71341 1.19024 1.17314 0.82833 1.03791 0.96086 1.20068 0.93648 1.07398 0.97964 1.20904 0.93467 1.01922 0.97699 1.17362 0.92630 0.92343 0.90268 1.19387 0.90438 1.14691 1.24790 0.90702 1.25799 1.00888 0.93770 0.93674 1.69859 1.35211 1.09140 1.29493 0.86385 0.82389 0.79973 0.78627 1.18653 1.20333 1.20043 1.19309 0.92775 1.07500 0.96316 1.20416 1.00915 0.98279 0.94596 1.19645 0.95383 1.06575 0.96264 0.86575 0.85800 0.90776 0.91152 0.90183 0.90152 0.90674 0.90995 0.92182 0.78158 0.89499 0.86449 0.91461 0.94025 0.94528 0.91925 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 13.91 28.94 0.40 -0.32 16 2 C -0.15 -1.48 5.99 -102.89 -0.62 -2.10 16 3 C -0.12 -0.95 9.85 36.01 0.35 -0.60 16 4 C 0.50 6.33 7.88 34.26 0.27 6.60 16 5 O -0.52 -7.65 16.01 -19.29 -0.31 -7.96 16 6 O -0.34 -4.49 9.44 -40.76 -0.38 -4.88 16 7 C 0.06 0.73 5.61 37.16 0.21 0.94 16 8 C 0.14 2.04 5.28 -4.04 -0.02 2.02 16 9 N -0.76 -13.21 5.65 -58.50 -0.33 -13.54 16 10 C 0.10 2.09 6.67 -83.69 -0.56 1.54 16 11 C -0.17 -3.92 9.23 -39.77 -0.37 -4.29 16 12 C -0.12 -3.12 8.62 -39.27 -0.34 -3.46 16 13 C 0.08 2.05 5.56 -106.79 -0.59 1.45 16 14 C -0.46 -12.30 8.09 -37.87 -0.31 -12.61 16 15 H 0.07 1.93 6.88 -52.48 -0.36 1.57 16 16 C 0.07 1.88 5.15 -17.34 -0.09 1.79 16 17 N -0.81 -21.38 10.97 55.54 0.61 -20.78 16 18 Si 0.90 19.17 29.59 -169.99 -5.03 14.14 16 19 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 C -0.16 -3.81 5.90 -104.30 -0.62 -4.42 16 23 C -0.09 -1.79 9.39 36.01 0.34 -1.45 16 24 C -0.16 -3.51 9.46 -39.77 -0.38 -3.89 16 25 H 0.12 0.91 7.49 -52.48 -0.39 0.51 16 26 H 0.12 0.54 8.06 -52.48 -0.42 0.12 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 29 H 0.08 0.78 7.68 -51.93 -0.40 0.38 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.03 7.93 -51.93 -0.41 0.62 16 33 H 0.06 0.90 7.92 -51.93 -0.41 0.49 16 34 H 0.39 6.21 8.47 -40.82 -0.35 5.86 16 35 H 0.09 1.82 6.68 -52.49 -0.35 1.47 16 36 H 0.12 3.18 6.23 -52.49 -0.33 2.85 16 37 H 0.27 6.65 8.30 -40.82 -0.34 6.31 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.06 1.35 6.78 -51.93 -0.35 1.00 16 41 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -29.88 348.78 -8.36 -38.24 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.86 Total: 8.31 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -2.31 Total: -18.80 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.28 Total: -34.31 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.69 Total: -12.83 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.88 -8.36 -38.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168073948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.964 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds