Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33079 * 1 3 3 C 1.50703 * 119.99731 * 2 1 4 4 C 1.46944 * 120.00194 * 179.97438 * 2 1 3 5 5 O 1.21533 * 120.00345 * 0.02562 * 4 2 1 6 6 O 1.34797 * 120.00045 * 180.02562 * 4 2 1 7 7 C 1.45206 * 117.00291 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47430 * 180.02562 * 7 6 4 9 9 N 1.46500 * 109.47365 * 64.99678 * 8 7 6 10 10 C 1.38856 * 120.00068 * 180.02562 * 9 8 7 11 11 C 1.39592 * 119.84282 * 0.02562 * 10 9 8 12 12 C 1.36318 * 120.15852 * 179.97438 * 11 10 9 13 13 C 1.40896 * 119.84133 * 0.02562 * 12 11 10 14 14 C 1.41145 * 120.15994 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99693 * 153.66531 * 14 13 12 16 16 C 1.39858 * 119.99789 * 333.67023 * 14 13 12 17 17 N 1.30909 * 119.99920 * 343.79160 * 16 14 13 18 18 Si 1.86801 * 120.00068 * 163.79606 * 16 14 13 19 19 H 1.48494 * 109.46949 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47269 * 119.99731 * 18 16 14 21 21 H 1.48505 * 109.46753 * 239.99601 * 18 16 14 22 22 C 1.40869 * 119.68664 * 359.97438 * 13 12 11 23 23 C 1.50702 * 120.08290 * 180.02562 * 22 13 12 24 24 C 1.36355 * 119.83890 * 359.71955 * 22 13 12 25 25 H 1.08005 * 119.99961 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.00472 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46641 * 269.99405 * 3 2 1 28 28 H 1.08996 * 109.47224 * 29.99234 * 3 2 1 29 29 H 1.09000 * 109.47338 * 149.99687 * 3 2 1 30 30 H 1.09003 * 109.47115 * 59.99975 * 7 6 4 31 31 H 1.09001 * 109.47094 * 300.00397 * 7 6 4 32 32 H 1.09000 * 109.47075 * 185.00025 * 8 7 6 33 33 H 1.08998 * 109.46876 * 304.99721 * 8 7 6 34 34 H 0.97000 * 119.99843 * 0.02562 * 9 8 7 35 35 H 1.07998 * 119.91822 * 359.97438 * 11 10 9 36 36 H 1.08002 * 120.08119 * 180.02562 * 12 11 10 37 37 H 0.96999 * 119.99939 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.47755 * 89.99613 * 23 22 13 39 39 H 1.09000 * 109.47549 * 210.00246 * 23 22 13 40 40 H 1.09007 * 109.47219 * 329.99792 * 23 22 13 41 41 H 1.07999 * 119.92452 * 180.29615 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3308 0.0000 0.0000 3 6 2.0842 1.3052 0.0000 4 6 2.0655 -1.2725 0.0006 5 8 1.4580 -2.3251 0.0006 6 8 3.4135 -1.2725 0.0011 7 6 4.0728 -2.5662 0.0011 8 6 5.5896 -2.3658 0.0023 9 7 5.9963 -1.7235 1.2547 10 6 7.3354 -1.4379 1.4855 11 6 8.2913 -1.7637 0.5219 12 6 9.6077 -1.4858 0.7416 13 6 10.0025 -0.8687 1.9451 14 6 11.3637 -0.5783 2.1798 15 1 11.6370 0.2301 2.8417 16 6 12.3584 -1.3375 1.5552 17 7 12.0592 -2.4932 1.0178 18 14 14.1139 -0.7026 1.4877 19 1 14.1888 0.6182 2.1622 20 1 15.0141 -1.6621 2.1761 21 1 14.5341 -0.5590 0.0706 22 6 9.0324 -0.5428 2.9131 23 6 9.4447 0.1180 4.2032 24 6 7.7185 -0.8209 2.6772 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 2.2659 1.6197 -1.0277 28 1 1.4951 2.0648 0.5137 29 1 3.0366 1.1749 0.5139 30 1 3.7803 -3.1231 -0.8892 31 1 3.7796 -3.1235 0.8908 32 1 6.0840 -3.3330 -0.0873 33 1 5.8732 -1.7335 -0.8390 34 1 5.3301 -1.4978 1.9226 35 1 7.9872 -2.2371 -0.4000 36 1 10.3461 -1.7380 -0.0051 37 1 12.7492 -3.0199 0.5849 38 1 9.4216 1.2007 4.0806 39 1 8.7561 -0.1726 4.9966 40 1 10.4549 -0.1965 4.4658 41 1 6.9730 -0.5673 3.4163 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168073948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = -69.957319 kcal Electronic energy + Delta-G solvation = -21876.276708 eV Core-core repulsion = 18527.398649 eV Total energy + Delta-G solvation = -3348.878059 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.52710 -39.91166 -38.09839 -36.68687 -35.65659 -34.92018 -32.87420 -31.69611 -29.51496 -28.14047 -27.78775 -25.93135 -25.34937 -23.43562 -22.67440 -20.82316 -20.54455 -18.98394 -18.47074 -17.90986 -17.55353 -17.19187 -16.72199 -16.34382 -15.56568 -15.36522 -14.95026 -14.67773 -14.43472 -14.36338 -14.22631 -14.00232 -13.77006 -13.54095 -13.39173 -13.28031 -12.92306 -12.76311 -12.72092 -12.62159 -12.49880 -12.39175 -12.11470 -11.76578 -11.60244 -11.36666 -11.08467 -11.02371 -10.42885 -10.20658 -9.16516 -8.48955 -8.11734 -5.94980 0.11857 1.12445 1.21751 1.41944 1.55484 1.59557 1.63780 1.87655 2.29792 2.84026 2.89600 3.56445 3.78967 3.85872 3.97263 4.03762 4.26889 4.48152 4.51453 4.52800 4.63156 4.73598 4.79394 4.81769 4.84004 4.98911 5.07825 5.09032 5.16886 5.24213 5.32180 5.34052 5.36180 5.51788 5.54290 5.77240 5.94391 5.98956 6.26859 6.46954 6.62341 6.70435 6.90640 7.14971 7.16221 7.32985 8.54106 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030135 B = 0.002877 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.920908 B = 9730.436072 C =10116.058030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.185 4.185 3 C -0.110 4.110 4 C 0.495 3.505 5 O -0.545 6.545 6 O -0.350 6.350 7 C 0.065 3.935 8 C 0.140 3.860 9 N -0.750 5.750 10 C 0.116 3.884 11 C -0.182 4.182 12 C -0.141 4.141 13 C 0.035 3.965 14 C -0.492 4.492 15 H 0.072 0.928 16 C 0.029 3.971 17 N -0.845 5.845 18 Si 0.972 3.028 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.270 1.270 22 C -0.165 4.165 23 C -0.081 4.081 24 C -0.169 4.169 25 H 0.110 0.890 26 H 0.161 0.839 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.395 0.605 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.279 0.721 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.278 4.811 -2.598 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.186 4.186 3 C -0.167 4.167 4 C 0.342 3.658 5 O -0.438 6.438 6 O -0.266 6.266 7 C -0.009 4.009 8 C 0.015 3.985 9 N -0.386 5.386 10 C 0.016 3.984 11 C -0.204 4.204 12 C -0.161 4.161 13 C 0.032 3.968 14 C -0.523 4.523 15 H 0.090 0.910 16 C -0.182 4.182 17 N -0.474 5.474 18 Si 0.794 3.206 19 H -0.183 1.183 20 H -0.197 1.197 21 H -0.195 1.195 22 C -0.167 4.167 23 C -0.138 4.138 24 C -0.191 4.191 25 H 0.128 0.872 26 H 0.179 0.821 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.229 0.771 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -18.287 4.204 -2.895 18.986 hybrid contribution 0.859 -0.384 -0.019 0.941 sum -17.428 3.820 -2.914 18.078 Atomic orbital electron populations 1.25085 0.93269 1.05309 0.86703 1.21153 0.95407 0.92017 1.10001 1.20779 1.00169 0.92364 1.03366 1.22117 0.81070 0.90897 0.71677 1.90826 1.69858 1.34990 1.48132 1.86665 1.20736 1.35683 1.83561 1.23340 0.91135 0.82432 1.03982 1.21212 0.90903 0.98339 0.88013 1.43827 1.03926 1.70571 1.20269 1.17430 0.84354 1.01452 0.95132 1.20210 0.93042 1.07909 0.99252 1.20849 0.94304 1.03385 0.97592 1.17715 0.93556 0.94165 0.91336 1.19571 0.91268 1.15359 1.26140 0.90968 1.26587 1.04854 0.93647 0.93106 1.69933 1.36645 1.10222 1.30643 0.85310 0.77202 0.79351 0.78710 1.18289 1.19659 1.19508 1.19762 0.93247 1.06694 0.96968 1.20404 1.00737 0.98832 0.93812 1.19956 0.95409 1.06553 0.97190 0.87190 0.82118 0.90479 0.88852 0.92244 0.88610 0.90432 0.90394 0.92397 0.77080 0.87781 0.88577 0.91061 0.92651 0.92019 0.93202 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 13.91 66.66 0.93 0.15 16 2 C -0.18 -3.17 5.99 -18.74 -0.11 -3.29 16 3 C -0.11 -1.57 9.85 71.24 0.70 -0.87 16 4 C 0.49 12.00 7.88 70.10 0.55 12.55 16 5 O -0.55 -15.70 16.01 19.73 0.32 -15.38 16 6 O -0.35 -8.81 9.44 -57.09 -0.54 -9.35 16 7 C 0.06 1.52 5.61 71.98 0.40 1.92 16 8 C 0.14 3.85 5.28 86.38 0.46 4.31 16 9 N -0.75 -24.82 5.65 -338.99 -1.92 -26.74 16 10 C 0.12 4.89 6.67 38.67 0.26 5.15 16 11 C -0.18 -8.51 9.23 22.15 0.20 -8.30 16 12 C -0.14 -7.61 8.62 22.47 0.19 -7.41 16 13 C 0.04 1.92 5.56 -21.27 -0.12 1.81 16 14 C -0.49 -27.06 8.09 23.38 0.19 -26.87 16 15 H 0.07 3.84 6.88 -2.91 -0.02 3.82 16 16 C 0.03 1.53 5.15 85.22 0.44 1.97 16 17 N -0.85 -46.31 10.97 21.81 0.24 -46.07 16 18 Si 0.97 40.21 29.59 68.60 2.03 42.24 16 19 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 22 C -0.16 -7.98 5.90 -19.66 -0.12 -8.09 16 23 C -0.08 -3.33 9.39 71.24 0.67 -2.67 16 24 C -0.17 -7.36 9.46 22.15 0.21 -7.15 16 25 H 0.11 1.45 7.49 -2.91 -0.02 1.43 16 26 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 0.86 8.07 -2.39 -0.02 0.84 16 29 H 0.06 1.08 7.68 -2.39 -0.02 1.07 16 30 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 2.11 7.93 -2.39 -0.02 2.09 16 33 H 0.06 1.66 7.92 -2.39 -0.02 1.64 16 34 H 0.40 11.85 8.47 -92.71 -0.79 11.06 16 35 H 0.10 4.37 6.68 -2.91 -0.02 4.35 16 36 H 0.10 5.49 6.23 -2.91 -0.02 5.47 16 37 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 40 H 0.05 2.15 6.78 -2.38 -0.02 2.13 16 41 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -66.39 348.78 5.24 -61.15 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.25 Total: 30.93 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 4.86 Total: -36.79 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -1.68 Total: -72.81 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.22 Total: -24.73 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -66.39 5.24 -61.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168073948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.803 kcal (2) G-P(sol) polarization free energy of solvation -66.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds