Wall clock time and date at job start Tue Mar 31 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99499 * 2 1 4 4 C 1.53001 * 109.47058 * 119.68347 * 3 2 1 5 5 H 1.09008 * 109.47078 * 54.13624 * 4 3 2 6 6 N 1.46499 * 109.47018 * 294.14416 * 4 3 2 7 7 C 1.38861 * 120.00219 * 151.31913 * 6 4 3 8 8 C 1.39589 * 119.84098 * 6.25094 * 7 6 4 9 9 C 1.36315 * 120.16167 * 179.97438 * 8 7 6 10 10 C 1.40906 * 119.83560 * 0.07019 * 9 8 7 11 11 C 1.41137 * 120.15591 * 180.22642 * 10 9 8 12 12 H 1.07998 * 119.99711 * 151.66000 * 11 10 9 13 13 C 1.39865 * 120.00009 * 331.66129 * 11 10 9 14 14 N 1.30898 * 120.00035 * 348.40552 * 13 11 10 15 15 Si 1.86803 * 119.99891 * 168.40067 * 13 11 10 16 16 H 1.48502 * 109.46898 * 90.00056 * 15 13 11 17 17 H 1.48500 * 109.47012 * 210.00290 * 15 13 11 18 18 H 1.48499 * 109.47089 * 330.00202 * 15 13 11 19 19 C 1.40872 * 119.69074 * 359.95535 * 10 9 8 20 20 C 1.50701 * 120.08418 * 180.02562 * 19 10 9 21 21 C 1.36360 * 119.83179 * 359.97438 * 19 10 9 22 22 C 1.50697 * 109.47222 * 174.14167 * 4 3 2 23 23 O 1.20822 * 120.00217 * 120.00213 * 22 4 3 24 24 O 1.34228 * 119.99780 * 299.99751 * 22 4 3 25 25 C 1.45200 * 116.99861 * 179.97438 * 24 22 4 26 26 H 1.07999 * 120.00227 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00008 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00227 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47454 * 359.68574 * 3 2 1 30 30 H 1.08996 * 109.47127 * 239.67844 * 3 2 1 31 31 H 0.97003 * 120.00043 * 331.31668 * 6 4 3 32 32 H 1.08004 * 119.91757 * 0.02562 * 8 7 6 33 33 H 1.07996 * 120.08429 * 180.02562 * 9 8 7 34 34 H 0.97000 * 119.99753 * 180.02562 * 14 13 11 35 35 H 1.09005 * 109.46730 * 89.99729 * 20 19 10 36 36 H 1.08998 * 109.47289 * 209.99791 * 20 19 10 37 37 H 1.08993 * 109.47002 * 330.00020 * 20 19 10 38 38 H 1.07999 * 119.91621 * 180.02562 * 21 19 10 39 39 H 1.09000 * 109.47301 * 179.97438 * 25 24 22 40 40 H 1.08998 * 109.47258 * 300.00605 * 25 24 22 41 41 H 1.09008 * 109.46742 * 60.00182 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9370 1.3897 1.2532 5 1 3.5735 0.5067 1.3127 6 7 2.0820 1.4562 2.4409 7 6 2.5380 0.9566 3.6536 8 6 3.8560 0.5117 3.7701 9 6 4.3107 0.0206 4.9576 10 6 3.4463 -0.0388 6.0687 11 6 3.9113 -0.5416 7.3028 12 1 3.4729 -0.1949 8.2268 13 6 4.9399 -1.4890 7.3289 14 7 5.3162 -2.0773 6.2218 15 14 5.7768 -1.9146 8.9438 16 1 5.0588 -3.0418 9.5914 17 1 7.1845 -2.3090 8.6829 18 1 5.7524 -0.7315 9.8409 19 6 2.1173 0.4114 5.9437 20 6 1.1853 0.3525 7.1266 21 6 1.6766 0.9016 4.7500 22 6 3.7971 2.6252 1.1836 23 8 3.7053 3.4742 2.0384 24 8 4.6652 2.7824 0.1720 25 6 5.4606 3.9972 0.1687 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3551 2.1336 -0.0056 30 1 2.6944 1.3605 -0.8871 31 1 1.1972 1.8492 2.3803 32 1 4.5173 0.5576 2.9174 33 1 5.3307 -0.3229 5.0464 34 1 6.0294 -2.7346 6.2400 35 1 1.2545 1.2829 7.6903 36 1 0.1623 0.2149 6.7766 37 1 1.4652 -0.4828 7.7683 38 1 0.6581 1.2476 4.6528 39 1 6.1191 3.9980 -0.6999 40 1 4.8007 4.8636 0.1258 41 1 6.0597 4.0415 1.0784 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169841522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:17 Heat of formation + Delta-G solvation = -61.926740 kcal Electronic energy + Delta-G solvation = -22854.172161 eV Core-core repulsion = 19505.642334 eV Total energy + Delta-G solvation = -3348.529827 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.64486 -39.90748 -38.00780 -37.18781 -35.64813 -34.46604 -32.74094 -31.65363 -29.73468 -28.42540 -27.76344 -25.92936 -25.24407 -22.82613 -22.20933 -20.79608 -20.64974 -19.01363 -18.67445 -17.94695 -17.69599 -17.20782 -16.79979 -16.56317 -15.77931 -15.46456 -14.96442 -14.77031 -14.56689 -14.32025 -14.25690 -14.00233 -13.66577 -13.49567 -13.16305 -13.01383 -12.87021 -12.78827 -12.73743 -12.62842 -12.29826 -12.20048 -12.07228 -11.78482 -11.51745 -11.40562 -11.13071 -11.05958 -10.33464 -10.15951 -9.20143 -8.47285 -8.20155 -6.00723 1.07371 1.13314 1.19614 1.40396 1.44301 1.52428 1.56977 1.82046 2.28632 2.74593 2.90530 3.69516 3.81313 3.93502 3.97979 4.28806 4.30571 4.31419 4.38732 4.45557 4.48895 4.67896 4.69752 4.77499 4.92135 4.95000 5.06491 5.10550 5.13977 5.30636 5.33528 5.35537 5.50534 5.70667 5.81058 5.90805 5.92472 5.94970 6.23184 6.40617 6.59861 6.76777 6.86820 7.07813 7.13085 7.26905 8.54048 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.004461 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.262696 B = 6275.253201 C = 6990.237825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.156 4.156 3 C -0.080 4.080 4 C 0.177 3.823 5 H 0.109 0.891 6 N -0.717 5.717 7 C 0.119 3.881 8 C -0.180 4.180 9 C -0.139 4.139 10 C 0.038 3.962 11 C -0.492 4.492 12 H 0.072 0.928 13 C 0.028 3.972 14 N -0.849 5.849 15 Si 0.974 3.026 16 H -0.264 1.264 17 H -0.272 1.272 18 H -0.262 1.262 19 C -0.164 4.164 20 C -0.080 4.080 21 C -0.162 4.162 22 C 0.436 3.564 23 O -0.529 6.529 24 O -0.362 6.362 25 C 0.027 3.973 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.402 0.598 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.279 0.721 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.117 0.883 39 H 0.136 0.864 40 H 0.063 0.937 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.416 5.512 -13.756 15.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.174 4.174 3 C -0.118 4.118 4 C 0.067 3.933 5 H 0.127 0.873 6 N -0.351 5.351 7 C 0.021 3.979 8 C -0.201 4.201 9 C -0.160 4.160 10 C 0.035 3.965 11 C -0.523 4.523 12 H 0.090 0.910 13 C -0.182 4.182 14 N -0.478 5.478 15 Si 0.796 3.204 16 H -0.189 1.189 17 H -0.197 1.197 18 H -0.186 1.186 19 C -0.166 4.166 20 C -0.137 4.137 21 C -0.184 4.184 22 C 0.277 3.723 23 O -0.417 6.417 24 O -0.277 6.277 25 C -0.066 4.066 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.131 0.869 31 H 0.237 0.763 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.135 0.865 39 H 0.154 0.846 40 H 0.081 0.919 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.120 5.579 -13.678 15.336 hybrid contribution 0.654 0.054 0.902 1.115 sum -3.466 5.633 -12.776 14.387 Atomic orbital electron populations 1.23973 0.95675 1.02590 0.99860 1.22753 0.96361 0.97585 1.00741 1.20924 0.98711 0.97271 0.94888 1.20379 0.92205 0.92203 0.88471 0.87341 1.43563 1.17572 1.68898 1.05070 1.17348 0.92853 1.01007 0.86716 1.20127 0.94671 1.07763 0.97582 1.20870 0.99320 1.02148 0.93631 1.17711 0.91094 0.93669 0.93985 1.19558 1.17356 1.21737 0.93695 0.90973 1.26590 0.96211 0.94525 1.00916 1.69903 1.25818 1.21970 1.30082 0.85327 0.77728 0.79105 0.78235 1.18905 1.19730 1.18622 1.19811 0.94448 1.06550 0.95815 1.20401 0.96902 1.00829 0.95583 1.19950 0.98635 1.07399 0.92390 1.25605 0.78885 0.89451 0.78391 1.90654 1.66816 1.44606 1.39651 1.86514 1.49676 1.44240 1.47301 1.23502 0.94595 0.84221 1.04297 0.87666 0.87930 0.87323 0.89743 0.86885 0.76287 0.89069 0.88462 0.91068 0.92855 0.91738 0.93050 0.86476 0.84582 0.91871 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.35 14.32 67.78 0.97 -2.38 16 2 C -0.16 -3.13 9.27 25.64 0.24 -2.90 16 3 C -0.08 -1.58 5.19 29.85 0.15 -1.42 16 4 C 0.18 5.03 2.14 44.24 0.09 5.13 16 5 H 0.11 3.28 6.52 -2.38 -0.02 3.27 16 6 N -0.72 -23.90 4.41 -322.08 -1.42 -25.32 16 7 C 0.12 5.16 6.66 38.67 0.26 5.41 16 8 C -0.18 -8.72 9.05 22.15 0.20 -8.52 16 9 C -0.14 -7.73 8.61 22.47 0.19 -7.53 16 10 C 0.04 2.12 5.55 -21.27 -0.12 2.01 16 11 C -0.49 -27.42 8.06 23.38 0.19 -27.23 16 12 H 0.07 3.87 6.95 -2.91 -0.02 3.85 16 13 C 0.03 1.50 5.24 85.23 0.45 1.94 16 14 N -0.85 -46.86 10.84 21.82 0.24 -46.62 16 15 Si 0.97 40.65 29.58 68.60 2.03 42.68 16 16 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 18 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 19 C -0.16 -8.07 5.90 -19.66 -0.12 -8.19 16 20 C -0.08 -3.34 9.39 71.24 0.67 -2.67 16 21 C -0.16 -7.16 9.46 22.15 0.21 -6.95 16 22 C 0.44 13.71 7.11 71.23 0.51 14.21 16 23 O -0.53 -20.79 16.18 21.98 0.36 -20.44 16 24 O -0.36 -9.36 10.36 -51.39 -0.53 -9.89 16 25 C 0.03 0.56 10.56 113.37 1.20 1.75 16 26 H 0.11 1.65 7.83 -2.91 -0.02 1.63 16 27 H 0.10 1.75 8.06 -2.91 -0.02 1.73 16 28 H 0.11 2.26 8.06 -2.91 -0.02 2.23 16 29 H 0.08 1.49 7.78 -2.39 -0.02 1.47 16 30 H 0.11 1.82 7.97 -2.39 -0.02 1.80 16 31 H 0.40 11.78 8.64 -92.71 -0.80 10.97 16 32 H 0.09 4.11 6.17 -2.91 -0.02 4.09 16 33 H 0.10 5.72 6.19 -2.91 -0.02 5.70 16 34 H 0.28 14.12 8.30 -92.71 -0.77 13.35 16 35 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 37 H 0.05 2.22 6.82 -2.39 -0.02 2.21 16 38 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 39 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 41 H 0.05 1.12 8.13 -2.38 -0.02 1.10 16 Total: -1.00 -68.09 347.18 6.00 -62.09 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: 0.23 Total: 34.82 kcal Atomic # 6 Polarization: -42.42 SS G_CDS: 5.09 Total: -37.32 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.18 Total: -71.94 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.18 Total: -30.33 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -68.09 6.00 -62.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169841522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.164 kcal (2) G-P(sol) polarization free energy of solvation -68.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds