Wall clock time and date at job start Tue Mar 31 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 119.99973 * 2 1 4 4 C 1.53003 * 109.46910 * 124.99964 * 3 2 1 5 5 H 1.09001 * 109.46981 * 304.99919 * 4 3 2 6 6 N 1.46503 * 109.46957 * 65.00223 * 4 3 2 7 7 C 1.38861 * 119.99710 * 274.99812 * 6 4 3 8 8 C 1.39589 * 119.84416 * 0.24835 * 7 6 4 9 9 C 1.36318 * 120.15798 * 180.30346 * 8 7 6 10 10 C 1.40901 * 119.83716 * 359.44734 * 9 8 7 11 11 C 1.41142 * 120.15770 * 180.25783 * 10 9 8 12 12 H 1.07993 * 120.00063 * 154.55532 * 11 10 9 13 13 C 1.39865 * 119.99793 * 334.54708 * 11 10 9 14 14 N 1.30904 * 120.00146 * 343.03945 * 13 11 10 15 15 Si 1.86796 * 119.99957 * 163.03912 * 13 11 10 16 16 H 1.48500 * 109.47026 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47107 * 120.00069 * 15 13 11 18 18 H 1.48498 * 109.47179 * 240.00203 * 15 13 11 19 19 C 1.40875 * 119.68956 * 0.28749 * 10 9 8 20 20 C 1.36361 * 119.83465 * 359.97438 * 19 10 9 21 21 C 1.50695 * 119.91643 * 179.97438 * 20 19 10 22 22 C 1.50702 * 109.46944 * 185.00167 * 4 3 2 23 23 O 1.20828 * 119.99771 * 239.99765 * 22 4 3 24 24 O 1.34230 * 120.00148 * 60.00151 * 22 4 3 25 25 C 1.45197 * 117.00366 * 179.97438 * 24 22 4 26 26 H 1.08004 * 119.99958 * 179.97438 * 1 2 3 27 27 H 1.08005 * 120.00487 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99905 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46861 * 5.00517 * 3 2 1 30 30 H 1.08995 * 109.47214 * 245.00099 * 3 2 1 31 31 H 0.97000 * 119.99490 * 95.00432 * 6 4 3 32 32 H 1.07999 * 119.91912 * 0.03251 * 8 7 6 33 33 H 1.08000 * 120.08492 * 179.73049 * 9 8 7 34 34 H 0.97001 * 120.00050 * 179.97438 * 14 13 11 35 35 H 1.07998 * 120.08457 * 179.97438 * 19 10 9 36 36 H 1.08998 * 109.47119 * 90.00560 * 21 20 19 37 37 H 1.09005 * 109.46992 * 209.99950 * 21 20 19 38 38 H 1.08996 * 109.47696 * 330.00396 * 21 20 19 39 39 H 1.08995 * 109.46785 * 59.99583 * 25 24 22 40 40 H 1.08998 * 109.47543 * 180.02562 * 25 24 22 41 41 H 1.09000 * 109.47062 * 300.00318 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 2.4882 1.1469 2.1060 6 7 4.0546 0.2969 1.0001 7 6 3.8017 -1.0054 1.4105 8 6 2.5730 -1.3246 1.9909 9 6 2.3203 -2.5996 2.4017 10 6 3.2986 -3.5988 2.2286 11 6 3.0420 -4.9223 2.6465 12 1 3.5601 -5.7463 2.1787 13 6 2.1169 -5.1666 3.6667 14 7 1.7390 -4.1920 4.4547 15 14 1.4208 -6.8835 3.9047 16 1 2.0048 -7.7993 2.8920 17 1 1.7597 -7.3708 5.2660 18 1 -0.0552 -6.8456 3.7458 19 6 4.5343 -3.2705 1.6371 20 6 4.7753 -1.9898 1.2358 21 6 6.0966 -1.6364 0.6033 22 6 3.6990 2.6840 1.2542 23 8 4.9006 2.7722 1.1636 24 8 2.9555 3.7893 1.4195 25 6 3.6622 5.0561 1.4812 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5401 0.9353 -0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0897 30 1 2.6212 1.4027 -0.9313 31 1 4.9063 0.5206 0.5933 32 1 1.8224 -0.5587 2.1187 33 1 1.3709 -2.8444 2.8545 34 1 1.0971 -4.3614 5.1620 35 1 5.2888 -4.0312 1.5017 36 1 6.0296 -1.7691 -0.4765 37 1 6.3404 -0.5978 0.8272 38 1 6.8756 -2.2865 1.0016 39 1 4.2136 5.2100 0.5537 40 1 2.9454 5.8659 1.6169 41 1 4.3584 5.0433 2.3198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169842065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:00 Heat of formation + Delta-G solvation = -39.700738 kcal Electronic energy + Delta-G solvation = -23056.721745 eV Core-core repulsion = 19709.155710 eV Total energy + Delta-G solvation = -3347.566035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 4.37 seconds Orbital eigenvalues (eV) -40.66038 -38.59326 -36.69370 -35.94277 -34.08839 -32.76235 -31.23113 -30.23175 -28.34004 -27.40657 -25.78493 -24.82702 -23.68066 -21.52318 -20.35526 -19.87991 -18.95597 -17.76705 -17.04558 -16.75808 -16.54125 -15.70705 -15.22662 -14.95315 -14.89730 -13.79683 -13.58274 -13.44840 -13.18452 -13.00358 -12.80359 -12.61643 -12.28466 -12.21476 -11.81240 -11.70155 -11.50025 -11.39742 -11.13564 -11.06073 -10.92221 -10.77075 -10.63963 -10.45027 -10.16945 -9.67236 -9.46611 -9.31216 -8.90103 -8.58081 -7.33151 -6.64568 -6.40581 -4.06846 2.11946 2.48420 2.70941 2.88558 3.05779 3.14926 3.20149 3.30517 4.04463 4.18036 4.67407 4.71262 4.94469 5.01355 5.12594 5.26280 5.31948 5.39219 5.61046 5.73855 5.83294 5.95827 5.99243 6.07115 6.23010 6.30937 6.35776 6.38022 6.57916 6.79134 6.93199 7.08662 7.14030 7.20195 7.36040 7.48581 7.66636 7.69147 7.82617 8.13275 8.24596 8.41304 8.63673 8.76181 9.04121 9.11821 10.35574 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020990 B = 0.004265 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.617596 B = 6563.198673 C = 7115.417228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.138 4.138 3 C -0.101 4.101 4 C 0.178 3.822 5 H 0.112 0.888 6 N -0.741 5.741 7 C 0.090 3.910 8 C -0.158 4.158 9 C -0.127 4.127 10 C 0.081 3.919 11 C -0.465 4.465 12 H 0.073 0.927 13 C 0.075 3.925 14 N -0.806 5.806 15 Si 0.902 3.098 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.274 1.274 19 C -0.186 4.186 20 C -0.123 4.123 21 C -0.098 4.098 22 C 0.459 3.541 23 O -0.503 6.503 24 O -0.357 6.357 25 C 0.035 3.965 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.133 0.867 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.395 0.605 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.276 0.724 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.038 12.638 -5.828 13.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.156 4.156 3 C -0.140 4.140 4 C 0.069 3.931 5 H 0.130 0.870 6 N -0.380 5.380 7 C -0.006 4.006 8 C -0.180 4.180 9 C -0.147 4.147 10 C 0.078 3.922 11 C -0.496 4.496 12 H 0.091 0.909 13 C -0.140 4.140 14 N -0.433 5.433 15 Si 0.727 3.273 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.200 1.200 19 C -0.206 4.206 20 C -0.126 4.126 21 C -0.155 4.155 22 C 0.301 3.699 23 O -0.390 6.390 24 O -0.273 6.273 25 C -0.059 4.059 26 H 0.115 0.885 27 H 0.106 0.894 28 H 0.151 0.849 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.232 0.768 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.955 12.799 -5.579 13.994 hybrid contribution 0.109 -0.470 0.252 0.545 sum -0.846 12.328 -5.327 13.456 Atomic orbital electron populations 1.23730 0.95845 1.01311 1.03726 1.23223 0.95924 0.98971 0.97479 1.21259 0.97723 0.97077 0.97955 1.20100 0.90050 0.81903 1.01040 0.87027 1.43755 1.17297 1.05046 1.71941 1.17034 0.95554 0.82763 1.05216 1.20231 0.95249 0.97418 1.05071 1.20910 0.99903 0.91892 1.02028 1.17500 0.90008 0.93506 0.91218 1.19407 1.20524 0.93235 1.16479 0.90916 1.25786 0.95215 0.98470 0.94526 1.69855 1.26503 1.33437 1.13539 0.86374 0.79258 0.83000 0.78690 1.18637 1.20287 1.19950 1.20450 0.97325 0.94025 1.08783 1.18623 0.94564 0.93642 1.05815 1.20513 0.95599 1.00121 0.99231 1.24237 0.86491 0.87118 0.72047 1.90637 1.16009 1.86995 1.45326 1.86521 1.41663 1.15885 1.83224 1.23256 0.98016 0.82179 1.02461 0.88461 0.89372 0.84896 0.90460 0.90674 0.76764 0.88609 0.86347 0.91355 0.88968 0.93152 0.93402 0.92807 0.91982 0.88107 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.90 14.32 29.02 0.42 -2.48 16 2 C -0.14 -2.10 6.70 -36.02 -0.24 -2.34 16 3 C -0.10 -1.36 5.30 -27.88 -0.15 -1.50 16 4 C 0.18 2.70 2.72 -69.08 -0.19 2.52 16 5 H 0.11 1.76 6.46 -51.93 -0.34 1.43 16 6 N -0.74 -13.05 4.95 -53.15 -0.26 -13.31 16 7 C 0.09 1.88 5.71 -83.69 -0.48 1.40 16 8 C -0.16 -3.46 6.48 -39.77 -0.26 -3.72 16 9 C -0.13 -3.19 8.63 -39.27 -0.34 -3.53 16 10 C 0.08 2.11 5.57 -106.79 -0.59 1.52 16 11 C -0.47 -12.40 9.03 -37.87 -0.34 -12.74 16 12 H 0.07 1.89 7.90 -52.49 -0.41 1.47 16 13 C 0.08 1.91 5.15 -17.34 -0.09 1.82 16 14 N -0.81 -21.03 10.96 55.54 0.61 -20.42 16 15 Si 0.90 19.00 29.59 -169.99 -5.03 13.97 16 16 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 17 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 18 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 19 C -0.19 -4.48 9.37 -39.26 -0.37 -4.85 16 20 C -0.12 -2.66 5.86 -104.81 -0.61 -3.27 16 21 C -0.10 -1.74 9.55 36.00 0.34 -1.40 16 22 C 0.46 6.71 7.32 36.01 0.26 6.98 16 23 O -0.50 -8.45 15.59 -18.75 -0.29 -8.74 16 24 O -0.36 -4.40 10.37 -39.26 -0.41 -4.81 16 25 C 0.03 0.31 10.56 101.05 1.07 1.38 16 26 H 0.10 1.36 8.06 -52.48 -0.42 0.94 16 27 H 0.09 1.05 7.84 -52.48 -0.41 0.63 16 28 H 0.13 2.43 5.33 -52.49 -0.28 2.15 16 29 H 0.08 0.90 7.65 -51.93 -0.40 0.50 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.40 6.87 5.74 -40.82 -0.23 6.63 16 32 H 0.10 1.91 4.80 -52.49 -0.25 1.66 16 33 H 0.12 3.11 6.19 -52.49 -0.32 2.79 16 34 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 35 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.80 6.53 -51.93 -0.34 0.46 16 38 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -28.29 336.67 -7.38 -35.67 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -5.50 Total: 12.78 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -1.57 Total: -20.21 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.35 Total: -33.74 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.70 Total: -13.54 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.29 -7.38 -35.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169842065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.028 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.38 seconds