Wall clock time and date at job start Tue Mar 31 2020 07:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50690 * 110.33449 * 2 1 4 4 O 1.21297 * 119.99852 * 104.15712 * 3 2 1 5 5 N 1.34770 * 120.00105 * 284.15091 * 3 2 1 6 6 C 1.37092 * 120.00067 * 4.94247 * 5 3 2 7 7 H 1.08004 * 120.00053 * 316.75498 * 6 5 3 8 8 C 1.38955 * 120.00141 * 136.75800 * 6 5 3 9 9 N 1.31412 * 119.99941 * 162.19852 * 8 6 5 10 10 Si 1.86803 * 119.99885 * 342.18672 * 8 6 5 11 11 H 1.48499 * 109.46550 * 95.17403 * 10 8 6 12 12 H 1.48495 * 109.46977 * 215.17102 * 10 8 6 13 13 H 1.48491 * 109.47123 * 335.17311 * 10 8 6 14 14 C 1.46502 * 120.00196 * 184.93860 * 5 3 2 15 15 C 1.50703 * 109.46982 * 90.00376 * 14 5 3 16 16 C 1.38237 * 119.99516 * 269.72628 * 15 14 5 17 17 C 1.38238 * 119.99586 * 179.74688 * 16 15 14 18 18 C 1.38237 * 120.00188 * 0.54819 * 17 16 15 19 19 C 1.38234 * 119.99706 * 359.70455 * 18 17 16 20 20 C 1.38232 * 120.00071 * 90.00046 * 15 14 5 21 21 C 1.54482 * 110.36550 * 122.24974 * 2 1 3 22 22 C 1.54509 * 104.06033 * 142.80846 * 21 2 1 23 23 C 1.54484 * 104.06537 * 359.97438 * 22 21 2 24 24 O 1.44424 * 110.37070 * 237.62472 * 2 1 3 25 25 H 1.08997 * 109.47110 * 293.41355 * 1 2 3 26 26 H 1.09002 * 109.46833 * 53.40405 * 1 2 3 27 27 H 1.08997 * 109.47775 * 173.40307 * 1 2 3 28 28 H 0.97000 * 119.99713 * 179.97438 * 9 8 6 29 29 H 1.09006 * 109.47320 * 210.00013 * 14 5 3 30 30 H 1.09005 * 109.47305 * 330.00287 * 14 5 3 31 31 H 1.07997 * 120.00214 * 359.97438 * 16 15 14 32 32 H 1.07999 * 120.00180 * 180.27953 * 17 16 15 33 33 H 1.07998 * 120.00669 * 179.72860 * 18 17 16 34 34 H 1.08002 * 120.00308 * 179.97438 * 19 18 17 35 35 H 1.07990 * 120.00168 * 0.02562 * 20 15 14 36 36 H 1.08996 * 110.51702 * 24.16704 * 21 2 1 37 37 H 1.09001 * 110.51465 * 261.44882 * 21 2 1 38 38 H 1.09007 * 110.51519 * 241.35307 * 22 21 2 39 39 H 1.09002 * 110.51753 * 118.64214 * 22 21 2 40 40 H 1.09006 * 110.37204 * 94.84932 * 23 22 21 41 41 H 1.09001 * 110.37644 * 217.19014 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4130 0.0000 4 8 2.5053 1.8924 1.0186 5 7 2.0203 2.1440 -1.1317 6 6 1.4187 1.6400 -2.2558 7 1 1.5862 0.6125 -2.5434 8 6 0.5936 2.4512 -3.0253 9 7 0.3000 2.1075 -4.2592 10 14 -0.0986 4.0299 -2.3055 11 1 0.7742 5.1704 -2.6835 12 1 -1.4671 4.2570 -2.8353 13 1 -0.1529 3.9172 -0.8259 14 6 2.6267 3.4773 -1.1607 15 6 4.0709 3.3633 -1.5761 16 6 5.0542 3.1960 -0.6190 17 6 6.3783 3.0862 -1.0004 18 6 6.7204 3.1551 -2.3380 19 6 5.7376 3.3278 -3.2947 20 6 4.4128 3.4319 -2.9138 21 6 2.0676 -0.7728 1.2248 22 6 3.3176 -1.5051 0.6876 23 6 3.3869 -1.0886 -0.7984 24 8 2.0327 -0.7250 -1.1435 25 1 -0.3633 0.4083 0.9430 26 1 -0.3633 0.6127 -0.8251 27 1 -0.3634 -1.0208 -0.1181 28 1 -0.2763 2.6736 -4.7962 29 1 2.0919 4.1044 -1.8742 30 1 2.5683 3.9248 -0.1685 31 1 4.7875 3.1473 0.4264 32 1 7.1461 2.9509 -0.2531 33 1 7.7553 3.0738 -2.6358 34 1 6.0047 3.3821 -4.3397 35 1 3.6451 3.5675 -3.6611 36 1 1.3274 -1.4903 1.5788 37 1 2.3429 -0.0819 2.0217 38 1 3.1953 -2.5847 0.7760 39 1 4.2108 -1.1762 1.2188 40 1 4.0520 -0.2339 -0.9223 41 1 3.7237 -1.9246 -1.4115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180469354.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:43 Heat of formation + Delta-G solvation = -56.646511 kcal Electronic energy + Delta-G solvation = -24643.058776 eV Core-core repulsion = 21294.757917 eV Total energy + Delta-G solvation = -3348.300859 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.70996 -40.16785 -38.89142 -36.89061 -34.08772 -33.17031 -32.90853 -31.93800 -31.75485 -27.70234 -26.93759 -26.79786 -23.88501 -23.39696 -22.52897 -21.96050 -20.59554 -19.21077 -18.18915 -17.42786 -17.23817 -16.99258 -16.59859 -16.19966 -16.11206 -15.86326 -15.34760 -14.73755 -14.52980 -14.44139 -14.22740 -14.14629 -13.96841 -13.56857 -13.31992 -13.23592 -13.10762 -12.86722 -12.57315 -12.40463 -12.31613 -12.07693 -11.99430 -11.75057 -11.71182 -11.55697 -11.25164 -10.98482 -10.25065 -9.79781 -9.63651 -9.55511 -8.41200 -6.06985 0.41758 0.52491 1.13775 1.26608 1.36009 1.77965 2.17610 2.51471 2.95436 3.03817 3.10350 3.75921 3.78285 3.85413 3.94383 4.05609 4.14067 4.17812 4.27186 4.30371 4.34060 4.48059 4.54604 4.68955 4.70858 4.73033 4.76655 4.89665 4.95207 4.96880 5.10179 5.11565 5.18294 5.22370 5.35225 5.47286 5.58853 5.61143 5.78812 5.95917 6.14332 6.21644 6.46744 7.01893 7.43016 7.75768 8.70945 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011605 B = 0.010003 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.173698 B = 2798.422389 C = 4190.960335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.100 3.900 3 C 0.470 3.530 4 O -0.606 6.606 5 N -0.457 5.457 6 C -0.319 4.319 7 H 0.105 0.895 8 C 0.036 3.964 9 N -0.896 5.896 10 Si 0.903 3.097 11 H -0.266 1.266 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.130 3.870 15 C -0.104 4.104 16 C -0.117 4.117 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.126 4.126 20 C -0.113 4.113 21 C -0.133 4.133 22 C -0.140 4.140 23 C 0.035 3.965 24 O -0.357 6.357 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.276 0.724 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.142 0.858 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.027 0.973 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.341 -2.636 6.120 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.058 3.942 3 C 0.260 3.740 4 O -0.492 6.492 5 N -0.176 5.176 6 C -0.446 4.446 7 H 0.123 0.877 8 C -0.167 4.167 9 N -0.534 5.534 10 Si 0.730 3.270 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.194 1.194 14 C 0.008 3.992 15 C -0.105 4.105 16 C -0.136 4.136 17 C -0.142 4.142 18 C -0.135 4.135 19 C -0.144 4.144 20 C -0.132 4.132 21 C -0.171 4.171 22 C -0.177 4.177 23 C -0.042 4.042 24 O -0.276 6.276 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.130 0.870 32 H 0.165 0.835 33 H 0.173 0.827 34 H 0.159 0.841 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.045 0.955 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.320 -2.388 6.215 10.656 hybrid contribution -0.759 1.154 -0.135 1.388 sum 7.560 -1.234 6.081 9.780 Atomic orbital electron populations 1.21724 0.90867 1.03866 1.02615 1.22276 0.96782 0.87975 0.87217 1.21409 0.80504 0.89940 0.82185 1.90475 1.51843 1.73888 1.33011 1.43816 1.48917 1.14514 1.10363 1.19376 1.24775 0.99760 1.00733 0.87740 1.25780 0.96278 0.99711 0.94959 1.69790 1.36207 1.40126 1.07247 0.86479 0.78605 0.82063 0.79897 1.19173 1.20933 1.19395 1.20629 0.91038 0.87000 1.00542 1.20146 0.94854 1.01076 0.94429 1.21166 0.93594 0.99979 0.98811 1.21402 0.95425 1.00106 0.97288 1.21474 1.00394 0.99162 0.92463 1.21391 0.92005 1.00090 1.00894 1.21122 0.97299 0.99754 0.95007 1.22914 0.98411 0.99129 0.96675 1.22884 0.98278 1.02079 0.94495 1.23490 0.84549 0.99150 0.96964 1.89280 1.27308 1.72720 1.38245 0.90573 0.92653 0.89514 0.91421 0.91918 0.91046 0.86960 0.83490 0.82662 0.84063 0.87933 0.88031 0.90109 0.88057 0.90304 0.95472 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 8.73 71.98 0.63 -4.35 16 2 C 0.10 3.99 0.69 -11.04 -0.01 3.98 16 3 C 0.47 21.86 6.04 87.65 0.53 22.39 16 4 O -0.61 -29.22 14.85 -3.08 -0.05 -29.26 16 5 N -0.46 -22.34 2.06 -639.59 -1.32 -23.66 16 6 C -0.32 -16.88 7.42 84.04 0.62 -16.25 16 7 H 0.11 6.08 5.62 -2.91 -0.02 6.06 16 8 C 0.04 1.93 5.35 84.93 0.45 2.38 16 9 N -0.90 -50.24 13.96 21.66 0.30 -49.94 16 10 Si 0.90 42.60 25.01 68.60 1.72 44.32 16 11 H -0.27 -12.02 6.75 99.48 0.67 -11.35 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 13 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 14 C 0.13 6.01 4.34 85.63 0.37 6.39 16 15 C -0.10 -4.33 5.46 -19.87 -0.11 -4.44 16 16 C -0.12 -4.31 9.70 22.27 0.22 -4.10 16 17 C -0.12 -3.64 10.05 22.27 0.22 -3.41 16 18 C -0.12 -3.15 10.05 22.27 0.22 -2.92 16 19 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 20 C -0.11 -4.48 9.70 22.27 0.22 -4.26 16 21 C -0.13 -4.22 6.09 31.61 0.19 -4.03 16 22 C -0.14 -3.89 7.09 31.61 0.22 -3.66 16 23 C 0.04 1.22 7.28 72.49 0.53 1.75 16 24 O -0.36 -15.02 8.29 -148.98 -1.24 -16.26 16 25 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.05 2.41 6.70 -2.39 -0.02 2.40 16 27 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.06 2.96 3.64 -2.38 -0.01 2.96 16 30 H 0.07 3.28 7.30 -2.38 -0.02 3.26 16 31 H 0.11 4.31 7.85 -2.91 -0.02 4.29 16 32 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 33 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 35 H 0.10 4.43 8.06 -2.92 -0.02 4.40 16 36 H 0.10 2.62 7.87 -2.39 -0.02 2.60 16 37 H 0.08 2.75 6.79 -2.39 -0.02 2.74 16 38 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.03 1.07 7.93 -2.38 -0.02 1.05 16 41 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -64.04 328.13 4.95 -59.10 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.99 Total: 29.97 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 4.54 Total: -14.27 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -1.02 Total: -73.60 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -1.28 Total: -45.52 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.72 Total: 44.32 kcal Total: -64.04 4.95 -59.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180469354.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.452 kcal (2) G-P(sol) polarization free energy of solvation -64.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds