Wall clock time and date at job start Tue Mar 31 2020 07:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.98765 * 2 1 4 4 O 1.21291 * 119.99886 * 260.88368 * 3 2 1 5 5 N 1.34778 * 119.99785 * 80.89063 * 3 2 1 6 6 C 1.37099 * 119.99963 * 5.43781 * 5 3 2 7 7 H 1.07991 * 120.00157 * 313.53312 * 6 5 3 8 8 C 1.38949 * 119.99655 * 133.53477 * 6 5 3 9 9 N 1.31412 * 119.99972 * 3.01628 * 8 6 5 10 10 Si 1.86804 * 119.99934 * 183.02074 * 8 6 5 11 11 H 1.48501 * 109.47005 * 59.99916 * 10 8 6 12 12 H 1.48498 * 109.47018 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46899 * 299.99992 * 10 8 6 14 14 C 1.46498 * 119.99853 * 185.44092 * 5 3 2 15 15 C 1.50700 * 109.47405 * 94.73155 * 14 5 3 16 16 C 1.38231 * 120.00737 * 274.52958 * 15 14 5 17 17 C 1.38230 * 120.00123 * 179.80719 * 16 15 14 18 18 C 1.38234 * 120.00130 * 0.41772 * 17 16 15 19 19 C 1.38237 * 119.99789 * 359.80767 * 18 17 16 20 20 C 1.38233 * 119.99956 * 0.02562 * 19 18 17 21 21 C 1.54101 * 109.87491 * 238.91722 * 2 1 3 22 22 C 1.54810 * 104.18796 * 238.54248 * 21 2 1 23 23 C 1.54992 * 102.09266 * 339.11995 * 22 21 2 24 24 O 1.43742 * 109.88096 * 121.09065 * 2 1 3 25 25 H 1.09011 * 109.46778 * 181.08681 * 1 2 3 26 26 H 1.08998 * 109.46707 * 301.07765 * 1 2 3 27 27 H 1.08993 * 109.47346 * 61.08766 * 1 2 3 28 28 H 0.97003 * 120.00097 * 179.97438 * 9 8 6 29 29 H 1.08997 * 109.47204 * 214.73930 * 14 5 3 30 30 H 1.09005 * 109.47401 * 334.73850 * 14 5 3 31 31 H 1.08008 * 119.99489 * 359.97438 * 16 15 14 32 32 H 1.07999 * 119.99775 * 180.20464 * 17 16 15 33 33 H 1.08003 * 119.99949 * 179.79201 * 18 17 16 34 34 H 1.08002 * 119.99709 * 179.97438 * 19 18 17 35 35 H 1.08005 * 119.99725 * 179.97438 * 20 19 18 36 36 H 1.08998 * 110.49173 * 357.22164 * 21 2 1 37 37 H 1.09005 * 110.48914 * 119.86686 * 21 2 1 38 38 H 1.08993 * 110.90495 * 97.32335 * 22 21 2 39 39 H 1.09008 * 110.90858 * 220.92362 * 22 21 2 40 40 H 1.08996 * 110.62033 * 278.52525 * 23 22 21 41 41 H 1.09005 * 110.75320 * 155.58423 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0452 1.4162 0.0000 4 8 2.4089 1.9292 -1.0372 5 7 2.1018 2.1126 1.1525 6 6 1.7972 1.4989 2.3400 7 1 0.9133 0.8835 2.4186 8 6 2.6259 1.6686 3.4423 9 7 3.6688 2.4644 3.3640 10 14 2.2577 0.7655 5.0355 11 1 2.2812 -0.6991 4.7911 12 1 3.2840 1.1139 6.0506 13 1 0.9156 1.1631 5.5311 14 6 2.4888 3.5255 1.1363 15 6 1.2517 4.3848 1.0903 16 6 0.6595 4.6796 -0.1234 17 6 -0.4776 5.4645 -0.1651 18 6 -1.0176 5.9618 1.0062 19 6 -0.4227 5.6708 2.2196 20 6 0.7124 4.8830 2.2616 21 6 2.0539 -0.7482 -1.2411 22 6 2.9195 -1.8914 -0.6577 23 6 3.2380 -1.3641 0.7645 24 8 2.0189 -0.6980 1.1576 25 1 -0.3633 -1.0276 0.0195 26 1 -0.3633 0.5305 0.8802 27 1 -0.3634 0.4968 -0.8995 28 1 4.2471 2.5832 4.1337 29 1 3.0585 3.7565 2.0364 30 1 3.1020 3.7243 0.2572 31 1 1.0837 4.2944 -1.0389 32 1 -0.9421 5.6921 -1.1131 33 1 -1.9041 6.5778 0.9733 34 1 -0.8443 6.0596 3.1348 35 1 1.1774 4.6560 3.2096 36 1 1.2246 -1.1548 -1.8198 37 1 2.6619 -0.0859 -1.8576 38 1 2.3540 -2.8219 -0.6101 39 1 3.8332 -2.0224 -1.2377 40 1 4.0685 -0.6588 0.7354 41 1 3.4600 -2.1891 1.4416 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180469361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:46 Heat of formation + Delta-G solvation = -47.154508 kcal Electronic energy + Delta-G solvation = -24416.955914 eV Core-core repulsion = 21069.066659 eV Total energy + Delta-G solvation = -3347.889255 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.79904 -38.55554 -37.09345 -34.86519 -31.78023 -31.52128 -31.35196 -30.23992 -30.18610 -25.83548 -25.42666 -24.60537 -22.19656 -21.84982 -21.09467 -20.16565 -18.85665 -17.30282 -16.19909 -15.81817 -15.46890 -15.07575 -14.69278 -14.45821 -14.27731 -14.25328 -13.59628 -13.03370 -12.93403 -12.76484 -12.72308 -12.35880 -11.95566 -11.85994 -11.58021 -11.36347 -11.16198 -11.10286 -11.01039 -10.72259 -10.65465 -10.49238 -10.32153 -10.21769 -10.11675 -10.03096 -9.51931 -8.96545 -8.32794 -8.28025 -7.92217 -7.38008 -6.17049 -4.00475 1.99966 2.05104 3.22349 3.27516 3.31413 3.82427 4.17326 4.41050 4.51085 4.89335 5.10877 5.15040 5.25885 5.46502 5.50535 5.52911 5.62789 5.68738 5.88144 5.94732 5.99748 6.04355 6.17020 6.19886 6.24112 6.26093 6.30804 6.44443 6.46164 6.59939 6.60467 6.67618 6.71316 6.84857 7.08192 7.13477 7.31331 7.54130 7.62398 7.66321 7.75445 8.08753 8.51375 9.18938 9.50257 9.94435 10.80029 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.008167 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.440963 B = 3427.757968 C = 4748.861828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.104 3.896 3 C 0.469 3.531 4 O -0.601 6.601 5 N -0.421 5.421 6 C -0.292 4.292 7 H 0.090 0.910 8 C 0.044 3.956 9 N -0.883 5.883 10 Si 0.915 3.085 11 H -0.270 1.270 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.125 3.875 15 C -0.071 4.071 16 C -0.112 4.112 17 C -0.133 4.133 18 C -0.137 4.137 19 C -0.132 4.132 20 C -0.094 4.094 21 C -0.140 4.140 22 C -0.154 4.154 23 C 0.045 3.955 24 O -0.324 6.324 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.267 0.733 29 H 0.135 0.865 30 H 0.060 0.940 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 -1.710 -3.166 5.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.061 3.939 3 C 0.256 3.744 4 O -0.488 6.488 5 N -0.138 5.138 6 C -0.421 4.421 7 H 0.107 0.893 8 C -0.158 4.158 9 N -0.522 5.522 10 Si 0.742 3.258 11 H -0.195 1.195 12 H -0.213 1.213 13 H -0.201 1.201 14 C 0.002 3.998 15 C -0.072 4.072 16 C -0.130 4.130 17 C -0.151 4.151 18 C -0.155 4.155 19 C -0.150 4.150 20 C -0.112 4.112 21 C -0.178 4.178 22 C -0.192 4.192 23 C -0.032 4.032 24 O -0.242 6.242 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.152 0.848 30 H 0.079 0.921 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.141 0.859 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.343 -1.389 -3.285 5.620 hybrid contribution -0.113 -0.453 0.734 0.870 sum -4.456 -1.842 -2.551 5.455 Atomic orbital electron populations 1.21822 0.92730 1.02065 1.02705 1.21907 0.95099 0.90697 0.86214 1.20813 0.81218 0.87974 0.84368 1.90489 1.53612 1.71690 1.32997 1.43318 1.58386 1.06610 1.05496 1.19309 1.08451 1.27051 0.87272 0.89263 1.25380 0.94445 0.96270 0.99742 1.69518 1.15419 1.35994 1.31287 0.86180 0.77827 0.80617 0.81166 1.19544 1.21289 1.20140 1.20879 0.92348 0.81044 1.05529 1.20652 0.98254 0.95914 0.92411 1.21251 0.95692 0.97782 0.98297 1.21014 0.96997 0.99444 0.97613 1.20943 1.00085 1.01502 0.92975 1.21065 0.96833 0.99850 0.97247 1.21157 0.95438 0.96073 0.98553 1.22933 1.00131 0.96997 0.97700 1.23145 0.99997 0.98505 0.97555 1.23439 0.89774 0.95986 0.93996 1.89194 1.38196 1.65905 1.30870 0.92035 0.91142 0.91907 0.92210 0.84838 0.92125 0.86233 0.87153 0.87235 0.87007 0.85917 0.91071 0.89027 0.91241 0.90992 0.92441 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.53 37.16 0.32 -2.13 16 2 C 0.10 2.12 0.70 -91.19 -0.06 2.05 16 3 C 0.47 11.25 6.59 -10.99 -0.07 11.17 16 4 O -0.60 -15.37 14.93 5.55 0.08 -15.29 16 5 N -0.42 -10.44 2.51 -116.10 -0.29 -10.73 16 6 C -0.29 -7.32 6.83 -14.93 -0.10 -7.42 16 7 H 0.09 2.25 5.74 -52.49 -0.30 1.95 16 8 C 0.04 1.10 5.40 -17.47 -0.09 1.01 16 9 N -0.88 -22.82 10.79 55.50 0.60 -22.22 16 10 Si 0.92 20.05 29.55 -169.99 -5.02 15.02 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 C 0.12 3.00 5.29 -5.19 -0.03 2.97 16 15 C -0.07 -1.53 5.43 -104.62 -0.57 -2.10 16 16 C -0.11 -2.23 9.72 -39.59 -0.38 -2.62 16 17 C -0.13 -2.27 10.05 -39.59 -0.40 -2.67 16 18 C -0.14 -2.21 10.05 -39.58 -0.40 -2.60 16 19 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 20 C -0.09 -1.87 9.68 -39.58 -0.38 -2.25 16 21 C -0.14 -2.44 6.16 -25.20 -0.16 -2.59 16 22 C -0.15 -2.36 7.15 -24.73 -0.18 -2.53 16 23 C 0.05 0.83 7.66 38.21 0.29 1.12 16 24 O -0.32 -6.91 8.01 -35.23 -0.28 -7.19 16 25 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 26 H 0.07 1.37 6.82 -51.93 -0.35 1.01 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 29 H 0.13 3.41 5.12 -51.93 -0.27 3.14 16 30 H 0.06 1.51 7.20 -51.93 -0.37 1.14 16 31 H 0.12 2.48 8.02 -52.48 -0.42 2.06 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.12 2.52 8.06 -52.48 -0.42 2.10 16 36 H 0.07 1.07 7.70 -51.93 -0.40 0.68 16 37 H 0.09 1.76 6.66 -51.93 -0.35 1.42 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 333.05 15.07 5.02 5.02 Total: -1.00 -28.24 333.05 -8.33 -36.57 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -5.82 Total: 10.07 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.61 Total: -11.26 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.31 Total: -32.95 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.20 Total: -22.48 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.24 -8.33 -36.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180469361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.581 kcal (2) G-P(sol) polarization free energy of solvation -28.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds