Wall clock time and date at job start Tue Mar 31 2020 07:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.98765 * 2 1 4 4 O 1.21291 * 119.99886 * 260.88368 * 3 2 1 5 5 N 1.34778 * 119.99785 * 80.89063 * 3 2 1 6 6 C 1.37099 * 119.99963 * 5.43781 * 5 3 2 7 7 H 1.07991 * 120.00157 * 313.53312 * 6 5 3 8 8 C 1.38949 * 119.99655 * 133.53477 * 6 5 3 9 9 N 1.31412 * 119.99972 * 3.01628 * 8 6 5 10 10 Si 1.86804 * 119.99934 * 183.02074 * 8 6 5 11 11 H 1.48501 * 109.47005 * 59.99916 * 10 8 6 12 12 H 1.48498 * 109.47018 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46899 * 299.99992 * 10 8 6 14 14 C 1.46498 * 119.99853 * 185.44092 * 5 3 2 15 15 C 1.50700 * 109.47405 * 94.73155 * 14 5 3 16 16 C 1.38231 * 120.00737 * 274.52958 * 15 14 5 17 17 C 1.38230 * 120.00123 * 179.80719 * 16 15 14 18 18 C 1.38234 * 120.00130 * 0.41772 * 17 16 15 19 19 C 1.38237 * 119.99789 * 359.80767 * 18 17 16 20 20 C 1.38233 * 119.99956 * 0.02562 * 19 18 17 21 21 C 1.54101 * 109.87491 * 238.91722 * 2 1 3 22 22 C 1.54810 * 104.18796 * 238.54248 * 21 2 1 23 23 C 1.54992 * 102.09266 * 339.11995 * 22 21 2 24 24 O 1.43742 * 109.88096 * 121.09065 * 2 1 3 25 25 H 1.09011 * 109.46778 * 181.08681 * 1 2 3 26 26 H 1.08998 * 109.46707 * 301.07765 * 1 2 3 27 27 H 1.08993 * 109.47346 * 61.08766 * 1 2 3 28 28 H 0.97003 * 120.00097 * 179.97438 * 9 8 6 29 29 H 1.08997 * 109.47204 * 214.73930 * 14 5 3 30 30 H 1.09005 * 109.47401 * 334.73850 * 14 5 3 31 31 H 1.08008 * 119.99489 * 359.97438 * 16 15 14 32 32 H 1.07999 * 119.99775 * 180.20464 * 17 16 15 33 33 H 1.08003 * 119.99949 * 179.79201 * 18 17 16 34 34 H 1.08002 * 119.99709 * 179.97438 * 19 18 17 35 35 H 1.08005 * 119.99725 * 179.97438 * 20 19 18 36 36 H 1.08998 * 110.49173 * 357.22164 * 21 2 1 37 37 H 1.09005 * 110.48914 * 119.86686 * 21 2 1 38 38 H 1.08993 * 110.90495 * 97.32335 * 22 21 2 39 39 H 1.09008 * 110.90858 * 220.92362 * 22 21 2 40 40 H 1.08996 * 110.62033 * 278.52525 * 23 22 21 41 41 H 1.09005 * 110.75320 * 155.58423 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0452 1.4162 0.0000 4 8 2.4089 1.9292 -1.0372 5 7 2.1018 2.1126 1.1525 6 6 1.7972 1.4989 2.3400 7 1 0.9133 0.8835 2.4186 8 6 2.6259 1.6686 3.4423 9 7 3.6688 2.4644 3.3640 10 14 2.2577 0.7655 5.0355 11 1 2.2812 -0.6991 4.7911 12 1 3.2840 1.1139 6.0506 13 1 0.9156 1.1631 5.5311 14 6 2.4888 3.5255 1.1363 15 6 1.2517 4.3848 1.0903 16 6 0.6595 4.6796 -0.1234 17 6 -0.4776 5.4645 -0.1651 18 6 -1.0176 5.9618 1.0062 19 6 -0.4227 5.6708 2.2196 20 6 0.7124 4.8830 2.2616 21 6 2.0539 -0.7482 -1.2411 22 6 2.9195 -1.8914 -0.6577 23 6 3.2380 -1.3641 0.7645 24 8 2.0189 -0.6980 1.1576 25 1 -0.3633 -1.0276 0.0195 26 1 -0.3633 0.5305 0.8802 27 1 -0.3634 0.4968 -0.8995 28 1 4.2471 2.5832 4.1337 29 1 3.0585 3.7565 2.0364 30 1 3.1020 3.7243 0.2572 31 1 1.0837 4.2944 -1.0389 32 1 -0.9421 5.6921 -1.1131 33 1 -1.9041 6.5778 0.9733 34 1 -0.8443 6.0596 3.1348 35 1 1.1774 4.6560 3.2096 36 1 1.2246 -1.1548 -1.8198 37 1 2.6619 -0.0859 -1.8576 38 1 2.3540 -2.8219 -0.6101 39 1 3.8332 -2.0224 -1.2377 40 1 4.0685 -0.6588 0.7354 41 1 3.4600 -2.1891 1.4416 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180469361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:45 Heat of formation + Delta-G solvation = -61.854804 kcal Electronic energy + Delta-G solvation = -24417.593367 eV Core-core repulsion = 21069.066659 eV Total energy + Delta-G solvation = -3348.526708 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.47647 -40.06122 -38.78831 -36.75660 -33.59777 -33.11066 -32.83542 -31.77551 -31.68298 -27.61342 -26.89530 -26.44990 -23.77391 -23.32299 -22.51057 -21.72978 -20.69447 -19.03712 -17.82775 -17.41144 -17.07691 -16.69523 -16.40376 -16.15230 -15.92004 -15.78799 -15.29647 -14.74195 -14.42636 -14.23860 -14.17312 -13.90637 -13.51267 -13.26482 -13.15415 -13.12012 -12.91477 -12.83162 -12.52937 -12.34343 -12.23742 -12.07525 -11.94041 -11.71881 -11.68631 -11.57160 -11.16807 -10.88041 -10.04141 -9.74223 -9.51145 -9.31576 -8.09462 -5.98299 0.52547 0.58338 1.45992 1.47939 1.55734 1.98976 2.37570 2.81108 3.02181 3.16746 3.31285 3.75139 3.84730 4.05913 4.16065 4.17205 4.22577 4.25783 4.34924 4.40302 4.49030 4.60628 4.67418 4.75574 4.81253 4.87111 4.90984 4.96234 5.01786 5.07859 5.17784 5.20614 5.25042 5.29271 5.40773 5.65015 5.66738 5.70952 5.95783 6.07996 6.17882 6.24491 6.55573 7.24242 7.60239 8.04063 8.87313 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.008167 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.440963 B = 3427.757968 C = 4748.861828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.098 3.902 3 C 0.454 3.546 4 O -0.629 6.629 5 N -0.431 5.431 6 C -0.293 4.293 7 H 0.087 0.913 8 C 0.005 3.995 9 N -0.910 5.910 10 Si 0.972 3.028 11 H -0.268 1.268 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.130 3.870 15 C -0.095 4.095 16 C -0.129 4.129 17 C -0.125 4.125 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.111 4.111 21 C -0.137 4.137 22 C -0.138 4.138 23 C 0.036 3.964 24 O -0.345 6.345 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.266 0.734 29 H 0.115 0.885 30 H 0.033 0.967 31 H 0.100 0.900 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.145 0.855 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.023 0.977 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 -2.514 -3.096 8.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.056 3.944 3 C 0.243 3.757 4 O -0.517 6.517 5 N -0.148 5.148 6 C -0.421 4.421 7 H 0.105 0.895 8 C -0.195 4.195 9 N -0.550 5.550 10 Si 0.797 3.203 11 H -0.193 1.193 12 H -0.212 1.212 13 H -0.193 1.193 14 C 0.007 3.993 15 C -0.096 4.096 16 C -0.148 4.148 17 C -0.143 4.143 18 C -0.141 4.141 19 C -0.143 4.143 20 C -0.130 4.130 21 C -0.175 4.175 22 C -0.175 4.175 23 C -0.041 4.041 24 O -0.263 6.263 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.133 0.867 30 H 0.051 0.949 31 H 0.118 0.882 32 H 0.161 0.839 33 H 0.173 0.827 34 H 0.162 0.838 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.041 0.959 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.018 -2.195 -3.215 8.025 hybrid contribution 0.723 -0.113 0.671 0.993 sum -6.295 -2.307 -2.545 7.171 Atomic orbital electron populations 1.21789 0.90862 1.03858 1.02085 1.22045 0.96494 0.88460 0.87439 1.21652 0.80731 0.89681 0.83680 1.90452 1.54746 1.72811 1.33713 1.43532 1.58334 1.06947 1.05969 1.19359 1.08380 1.26871 0.87478 0.89518 1.26057 0.94280 0.96763 1.02372 1.69667 1.16328 1.37087 1.31937 0.85298 0.77836 0.79387 0.77768 1.19335 1.21240 1.19304 1.20648 0.93657 0.81961 1.03025 1.20438 0.98055 0.97167 0.93967 1.21167 0.97348 0.99437 0.96822 1.21361 0.95427 0.97739 0.99800 1.21429 1.00648 1.00358 0.91676 1.21416 0.95242 0.98239 0.99364 1.21103 0.97066 0.97669 0.97157 1.22930 1.01168 0.97068 0.96358 1.23113 1.00757 0.98615 0.95022 1.23596 0.87850 0.95746 0.96927 1.89149 1.39057 1.66104 1.31969 0.88848 0.93151 0.91186 0.92371 0.86750 0.94853 0.88208 0.83948 0.82740 0.83763 0.87585 0.87999 0.91528 0.88032 0.89289 0.95887 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 8.53 71.98 0.61 -3.88 16 2 C 0.10 4.01 0.70 -11.17 -0.01 4.00 16 3 C 0.45 22.74 6.59 87.66 0.58 23.32 16 4 O -0.63 -33.99 14.93 -3.06 -0.05 -34.03 16 5 N -0.43 -22.51 2.51 -639.61 -1.60 -24.11 16 6 C -0.29 -15.13 6.83 84.04 0.57 -14.56 16 7 H 0.09 4.47 5.74 -2.92 -0.02 4.46 16 8 C 0.00 0.25 5.40 84.93 0.46 0.71 16 9 N -0.91 -49.26 10.79 21.66 0.23 -49.02 16 10 Si 0.97 41.54 29.55 68.60 2.03 43.56 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 12 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 14 C 0.13 6.73 5.29 85.63 0.45 7.18 16 15 C -0.10 -4.28 5.43 -19.87 -0.11 -4.39 16 16 C -0.13 -5.28 9.72 22.27 0.22 -5.06 16 17 C -0.13 -4.02 10.05 22.27 0.22 -3.80 16 18 C -0.12 -3.51 10.05 22.27 0.22 -3.28 16 19 C -0.12 -3.99 10.05 22.27 0.22 -3.76 16 20 C -0.11 -4.52 9.68 22.27 0.22 -4.31 16 21 C -0.14 -4.62 6.16 31.58 0.19 -4.43 16 22 C -0.14 -3.88 7.15 31.89 0.23 -3.65 16 23 C 0.04 1.28 7.66 72.66 0.56 1.84 16 24 O -0.34 -14.62 8.01 -148.98 -1.19 -15.81 16 25 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 26 H 0.05 1.94 6.82 -2.39 -0.02 1.92 16 27 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 29 H 0.12 6.33 5.12 -2.39 -0.01 6.32 16 30 H 0.03 1.82 7.20 -2.38 -0.02 1.81 16 31 H 0.10 4.39 8.02 -2.91 -0.02 4.37 16 32 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 33 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 34 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 35 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.10 2.78 7.70 -2.39 -0.02 2.76 16 37 H 0.07 2.59 6.66 -2.38 -0.02 2.57 16 38 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.11 3.27 8.14 -2.38 -0.02 3.25 16 Total: -1.00 -65.31 333.05 5.08 -60.23 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: 1.02 Total: 33.26 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 4.64 Total: -14.07 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -1.37 Total: -73.13 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -1.24 Total: -49.85 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -65.31 5.08 -60.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180469361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.629 kcal (2) G-P(sol) polarization free energy of solvation -65.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds