Wall clock time and date at job start Tue Mar 31 2020 07:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 110.45562 * 2 1 4 4 O 1.21290 * 119.99549 * 242.27881 * 3 2 1 5 5 N 1.34779 * 120.00373 * 62.27855 * 3 2 1 6 6 C 1.37093 * 119.99570 * 354.80364 * 5 3 2 7 7 H 1.07998 * 120.00311 * 47.66101 * 6 5 3 8 8 C 1.38947 * 119.99974 * 227.64641 * 6 5 3 9 9 N 1.31410 * 120.00413 * 206.15041 * 8 6 5 10 10 Si 1.86797 * 119.99912 * 26.16158 * 8 6 5 11 11 H 1.48502 * 109.47655 * 86.62004 * 10 8 6 12 12 H 1.48504 * 109.46847 * 326.62077 * 10 8 6 13 13 H 1.48499 * 109.47197 * 206.62665 * 10 8 6 14 14 C 1.46497 * 120.00111 * 174.80726 * 5 3 2 15 15 C 1.50700 * 109.47159 * 274.50365 * 14 5 3 16 16 C 1.38239 * 119.99873 * 275.20472 * 15 14 5 17 17 C 1.38229 * 119.99865 * 179.80799 * 16 15 14 18 18 C 1.38244 * 120.00286 * 0.42187 * 17 16 15 19 19 C 1.38233 * 119.99386 * 359.80790 * 18 17 16 20 20 C 1.38231 * 120.00445 * 0.02562 * 19 18 17 21 21 C 1.54499 * 110.51711 * 237.38732 * 2 1 3 22 22 C 1.54476 * 104.06847 * 241.22056 * 21 2 1 23 23 O 1.44432 * 104.79973 * 23.97864 * 22 21 2 24 24 C 1.44427 * 105.27576 * 319.48740 * 23 22 21 25 25 H 1.09007 * 109.46572 * 63.26782 * 1 2 3 26 26 H 1.09003 * 109.46881 * 183.25951 * 1 2 3 27 27 H 1.08992 * 109.47591 * 303.26804 * 1 2 3 28 28 H 0.97002 * 120.00458 * 180.02562 * 9 8 6 29 29 H 1.09003 * 109.46983 * 34.50052 * 14 5 3 30 30 H 1.09000 * 109.47263 * 154.50082 * 14 5 3 31 31 H 1.08001 * 119.99728 * 0.02562 * 16 15 14 32 32 H 1.08001 * 120.00210 * 180.20952 * 17 16 15 33 33 H 1.07997 * 120.00130 * 179.79139 * 18 17 16 34 34 H 1.08004 * 119.99763 * 179.97438 * 19 18 17 35 35 H 1.08006 * 120.00246 * 179.97438 * 20 19 18 36 36 H 1.09008 * 110.51166 * 359.87020 * 21 2 1 37 37 H 1.09004 * 110.50931 * 122.43432 * 21 2 1 38 38 H 1.08996 * 110.37345 * 142.80893 * 22 21 2 39 39 H 1.08997 * 110.37417 * 265.15287 * 22 21 2 40 40 H 1.08997 * 110.37000 * 281.68554 * 24 23 22 41 41 H 1.08999 * 110.37187 * 159.33927 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.7264 1.8093 -0.9299 5 7 1.7835 2.2332 1.0332 6 6 0.9398 1.8208 2.0320 7 1 1.0696 0.8471 2.4808 8 6 -0.0820 2.6557 2.4672 9 7 -0.5493 2.5400 3.6899 10 14 -0.7918 3.9424 1.3140 11 1 -1.8747 3.3343 0.4999 12 1 0.2784 4.4468 0.4164 13 1 -1.3430 5.0692 2.1087 14 6 2.3880 3.5665 1.0889 15 6 3.7512 3.4738 1.7246 16 6 3.8752 3.5007 3.1011 17 6 5.1253 3.4117 3.6843 18 6 6.2522 3.3045 2.8908 19 6 6.1286 3.2824 1.5142 20 6 4.8782 3.3679 0.9311 21 6 2.0715 -0.7799 -1.2188 22 6 2.8787 -1.9394 -0.5943 23 8 2.3118 -2.1165 0.7223 24 6 2.0741 -0.7806 1.2171 25 1 -0.3633 0.4623 -0.9179 26 1 -0.3633 -1.0260 0.0584 27 1 -0.3634 0.5637 0.8592 28 1 -1.2630 3.1226 3.9936 29 1 2.4846 3.9641 0.0785 30 1 1.7553 4.2279 1.6807 31 1 2.9951 3.5878 3.7209 32 1 5.2219 3.4294 4.7599 33 1 7.2292 3.2384 3.3464 34 1 7.0090 3.1990 0.8942 35 1 4.7816 3.3510 -0.1445 36 1 1.2492 -1.1675 -1.8203 37 1 2.7182 -0.1434 -1.8229 38 1 2.7575 -2.8474 -1.1849 39 1 3.9327 -1.6715 -0.5205 40 1 3.0047 -0.3350 1.5684 41 1 1.3348 -0.7985 2.0178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184392003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:37 Heat of formation + Delta-G solvation = -59.218957 kcal Electronic energy + Delta-G solvation = -24378.944914 eV Core-core repulsion = 21030.532505 eV Total energy + Delta-G solvation = -3348.412409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.71240 -40.16848 -39.11778 -36.86892 -34.56205 -34.04586 -32.35987 -31.71835 -30.61248 -27.58477 -27.41734 -26.72298 -23.73450 -23.36104 -23.09538 -22.00661 -20.41481 -19.03962 -18.10190 -17.47703 -17.22722 -16.69747 -16.53390 -16.23104 -16.09346 -15.81512 -15.47660 -15.06277 -14.68526 -14.49610 -14.23102 -14.20203 -13.94375 -13.46051 -13.27337 -13.14782 -13.07526 -12.82449 -12.77772 -12.51515 -12.13929 -12.02674 -11.87084 -11.73981 -11.71345 -11.63533 -11.01521 -10.71519 -10.41540 -9.76750 -9.61837 -9.55814 -8.50357 -6.12024 0.44942 0.55758 1.23545 1.34477 1.42119 1.85120 2.22432 2.50206 2.87984 3.03544 3.20882 3.58922 3.91440 3.91863 3.96921 4.03049 4.20186 4.24497 4.29899 4.34138 4.35202 4.43391 4.61956 4.72655 4.76895 4.77620 4.81568 4.84934 4.90046 5.02358 5.10396 5.15114 5.18365 5.22449 5.48092 5.57169 5.62043 5.64476 5.77641 5.83609 6.16541 6.19520 6.27964 6.99902 7.41008 7.78809 8.61338 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011265 B = 0.009225 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.966503 B = 3034.546502 C = 4454.832254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 C 0.495 3.505 4 O -0.605 6.605 5 N -0.462 5.462 6 C -0.339 4.339 7 H 0.092 0.908 8 C 0.055 3.945 9 N -0.877 5.877 10 Si 0.889 3.111 11 H -0.274 1.274 12 H -0.256 1.256 13 H -0.281 1.281 14 C 0.148 3.852 15 C -0.108 4.108 16 C -0.109 4.109 17 C -0.128 4.128 18 C -0.120 4.120 19 C -0.129 4.129 20 C -0.117 4.117 21 C -0.141 4.141 22 C 0.046 3.954 23 O -0.388 6.388 24 C 0.079 3.921 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.279 0.721 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.558 -1.658 -3.533 8.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 C 0.285 3.715 4 O -0.491 6.491 5 N -0.182 5.182 6 C -0.466 4.466 7 H 0.109 0.891 8 C -0.152 4.152 9 N -0.512 5.512 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.180 1.180 13 H -0.206 1.206 14 C 0.026 3.974 15 C -0.109 4.109 16 C -0.128 4.128 17 C -0.146 4.146 18 C -0.138 4.138 19 C -0.147 4.147 20 C -0.135 4.135 21 C -0.179 4.179 22 C -0.030 4.030 23 O -0.307 6.307 24 C 0.002 3.998 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.127 0.873 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.138 0.862 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.682 -1.570 -3.700 8.670 hybrid contribution -0.888 1.095 -0.299 1.441 sum 6.794 -0.476 -4.000 7.898 Atomic orbital electron populations 1.21886 0.91416 1.02838 1.03197 1.21739 0.98703 0.91977 0.96992 1.20709 0.81169 0.88679 0.80946 1.90473 1.44407 1.77724 1.36460 1.43637 1.41067 1.13388 1.20124 1.18878 1.09278 1.04983 1.13459 0.89059 1.25695 0.96149 0.98067 0.95273 1.69876 1.26859 1.39359 1.15096 0.86740 0.80187 0.80436 0.81318 1.19948 1.17997 1.20606 1.20598 0.91130 0.86455 0.99252 1.20279 0.95141 1.00968 0.94485 1.21151 0.98250 0.99289 0.94101 1.21403 0.92007 1.00253 1.00942 1.21463 0.99404 0.99422 0.93468 1.21392 0.97013 1.00424 0.95824 1.21193 0.92855 0.99924 0.99574 1.23019 1.01211 0.96808 0.96851 1.23556 0.96545 0.99501 0.83444 1.89066 1.83314 1.26126 1.32236 1.23256 0.99080 0.81685 0.95764 0.93194 0.90889 0.90306 0.91128 0.91907 0.91263 0.87268 0.84117 0.82989 0.83859 0.87018 0.88881 0.89801 0.86204 0.92621 0.94290 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.04 8.08 71.98 0.58 -4.46 16 2 C -0.09 -3.49 0.68 -51.91 -0.04 -3.53 16 3 C 0.49 22.01 6.34 87.66 0.56 22.56 16 4 O -0.61 -28.56 14.78 -3.06 -0.05 -28.61 16 5 N -0.46 -21.06 1.93 -639.61 -1.24 -22.30 16 6 C -0.34 -16.21 6.18 84.04 0.52 -15.70 16 7 H 0.09 4.61 5.08 -2.91 -0.01 4.60 16 8 C 0.06 2.69 4.94 84.93 0.42 3.11 16 9 N -0.88 -45.20 13.96 21.66 0.30 -44.89 16 10 Si 0.89 39.24 26.67 68.60 1.83 41.07 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.26 -11.24 5.60 99.48 0.56 -10.68 16 13 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 14 C 0.15 6.47 3.67 85.63 0.31 6.78 16 15 C -0.11 -4.28 5.43 -19.86 -0.11 -4.39 16 16 C -0.11 -4.10 9.72 22.27 0.22 -3.88 16 17 C -0.13 -3.89 10.05 22.27 0.22 -3.66 16 18 C -0.12 -3.19 10.05 22.27 0.22 -2.97 16 19 C -0.13 -3.76 10.05 22.27 0.22 -3.53 16 20 C -0.12 -4.22 9.68 22.27 0.22 -4.01 16 21 C -0.14 -4.57 6.32 31.61 0.20 -4.37 16 22 C 0.05 1.33 7.63 72.48 0.55 1.89 16 23 O -0.39 -13.73 11.65 -148.98 -1.74 -15.46 16 24 C 0.08 3.05 5.34 72.49 0.39 3.44 16 25 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.08 3.32 5.30 -2.39 -0.01 3.31 16 28 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 29 H 0.06 2.78 7.37 -2.39 -0.02 2.77 16 30 H 0.07 3.06 5.21 -2.39 -0.01 3.04 16 31 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 35 H 0.11 4.20 7.92 -2.91 -0.02 4.18 16 36 H 0.09 2.61 7.73 -2.38 -0.02 2.59 16 37 H 0.08 2.94 6.51 -2.39 -0.02 2.93 16 38 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.04 1.62 7.86 -2.39 -0.02 1.60 16 41 H 0.10 3.96 6.26 -2.39 -0.01 3.94 16 Total: -1.00 -56.84 325.30 4.48 -52.35 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.88 Total: 30.57 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 4.49 Total: -12.72 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -0.93 Total: -67.19 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -1.78 Total: -44.07 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.83 Total: 41.07 kcal Total: -56.84 4.48 -52.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184392003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.867 kcal (2) G-P(sol) polarization free energy of solvation -56.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds