Wall clock time and date at job start Tue Mar 31 2020 07:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 112.90363 * 2 1 4 4 C 1.53780 * 113.61147 * 228.75277 * 2 1 3 5 5 C 1.53785 * 87.07920 * 220.01932 * 4 2 1 6 6 H 1.08998 * 113.61119 * 270.80101 * 5 4 2 7 7 C 1.50692 * 113.61649 * 139.98187 * 5 4 2 8 8 O 1.21294 * 120.00290 * 335.68048 * 7 5 4 9 9 N 1.34779 * 120.00018 * 155.67855 * 7 5 4 10 10 C 1.37094 * 120.00048 * 354.94677 * 9 7 5 11 11 H 1.08007 * 119.99602 * 35.06263 * 10 9 7 12 12 C 1.38951 * 120.00428 * 215.05885 * 10 9 7 13 13 N 1.31407 * 119.99697 * 21.89549 * 12 10 9 14 14 Si 1.86798 * 119.99833 * 201.89523 * 12 10 9 15 15 H 1.48495 * 109.47314 * 269.99682 * 14 12 10 16 16 H 1.48496 * 109.47458 * 30.00412 * 14 12 10 17 17 H 1.48509 * 109.47050 * 150.00264 * 14 12 10 18 18 C 1.46500 * 120.00067 * 174.94989 * 9 7 5 19 19 C 1.50697 * 109.47303 * 269.99913 * 18 9 7 20 20 C 1.38231 * 120.00331 * 269.73077 * 19 18 9 21 21 C 1.38235 * 120.00124 * 179.74271 * 20 19 18 22 22 C 1.38235 * 120.00037 * 0.54765 * 21 20 19 23 23 C 1.38242 * 119.99596 * 359.70777 * 22 21 20 24 24 C 1.38228 * 120.00190 * 0.02562 * 23 22 21 25 25 C 1.53777 * 87.17256 * 25.38878 * 5 4 2 26 26 H 1.09007 * 109.46862 * 191.25273 * 1 2 3 27 27 H 1.08995 * 109.46820 * 311.24516 * 1 2 3 28 28 H 1.08994 * 109.47285 * 71.25313 * 1 2 3 29 29 H 0.96699 * 114.00120 * 48.75765 * 3 2 1 30 30 H 1.08994 * 113.61602 * 105.47124 * 4 2 1 31 31 H 1.09002 * 113.61643 * 334.56461 * 4 2 1 32 32 H 0.97002 * 119.99593 * 176.60110 * 13 12 10 33 33 H 1.09007 * 109.47138 * 30.00469 * 18 9 7 34 34 H 1.09004 * 109.46804 * 150.00043 * 18 9 7 35 35 H 1.08003 * 119.99928 * 359.97438 * 20 19 18 36 36 H 1.08005 * 119.99781 * 180.26868 * 21 20 19 37 37 H 1.07993 * 120.00304 * 179.72210 * 22 21 20 38 38 H 1.08000 * 119.99792 * 180.02562 * 23 22 21 39 39 H 1.08004 * 120.00104 * 179.97438 * 24 23 22 40 40 H 1.09002 * 113.61014 * 89.16156 * 25 5 4 41 41 H 1.09002 * 113.61621 * 220.06279 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0862 1.3163 0.0000 4 6 2.1460 -0.9290 -1.0594 5 6 3.1924 -1.3136 -0.0001 6 1 4.0717 -0.6696 -0.0010 7 6 3.5408 -2.7797 -0.0001 8 8 2.7505 -3.5909 -0.4346 9 7 4.7305 -3.1897 0.4825 10 6 5.6647 -2.2672 0.8774 11 1 5.3496 -1.3439 1.3408 12 6 7.0169 -2.5201 0.6816 13 7 7.3979 -3.3867 -0.2298 14 14 8.2929 -1.6283 1.7139 15 1 8.6849 -0.3669 1.0353 16 1 7.7200 -1.3154 3.0477 17 1 9.4885 -2.4935 1.8793 18 6 5.0255 -4.6210 0.5852 19 6 4.5876 -5.1286 1.9348 20 6 5.4696 -5.1118 2.9991 21 6 5.0662 -5.5725 4.2384 22 6 3.7844 -6.0606 4.4107 23 6 2.9041 -6.0823 3.3451 24 6 3.3057 -5.6165 2.1072 25 6 2.1481 -0.9286 1.0610 26 1 -0.3633 -1.0080 0.2006 27 1 -0.3633 0.6775 0.7727 28 1 -0.3633 0.3303 -0.9731 29 1 1.7028 1.9053 0.6642 30 1 2.5650 -0.3988 -1.9146 31 1 1.4945 -1.7535 -1.3491 32 1 8.3424 -3.5271 -0.4007 33 1 4.4899 -5.1594 -0.1968 34 1 6.0974 -4.7804 0.4673 35 1 6.4727 -4.7352 2.8633 36 1 5.7540 -5.5553 5.0710 37 1 3.4706 -6.4247 5.3778 38 1 1.9025 -6.4632 3.4797 39 1 2.6180 -5.6338 1.2745 40 1 1.4971 -1.7530 1.3522 41 1 2.5687 -0.3980 1.9153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185467466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:52 Heat of formation + Delta-G solvation = -35.805983 kcal Electronic energy + Delta-G solvation = -23595.584428 eV Core-core repulsion = 20248.187282 eV Total energy + Delta-G solvation = -3347.397146 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.84481 -38.72796 -37.46884 -34.92574 -34.04787 -31.85656 -30.80476 -30.28160 -29.34024 -26.07613 -25.34715 -24.86707 -22.91770 -21.91142 -20.63561 -19.50630 -18.85066 -16.94060 -16.38929 -16.02135 -15.78754 -15.06867 -14.74969 -14.54153 -14.41697 -14.29798 -13.92441 -13.33174 -13.08106 -12.84843 -12.76250 -12.43751 -12.15906 -12.02610 -11.71015 -11.62318 -11.32246 -11.29347 -11.07944 -10.82056 -10.70517 -10.45409 -10.38139 -10.30711 -10.12547 -9.76846 -9.45748 -9.15469 -8.47252 -8.33216 -8.03047 -7.52809 -6.40529 -4.05149 1.94519 1.99733 3.08336 3.19385 3.23666 3.80790 4.07613 4.30614 4.34746 4.79643 4.89989 4.92692 5.04832 5.30431 5.41887 5.47528 5.53115 5.60443 5.68492 5.79287 5.89423 5.99033 6.10924 6.13948 6.17816 6.20279 6.27641 6.34413 6.45916 6.54868 6.62236 6.66876 6.78776 6.96629 7.03239 7.06780 7.19245 7.43367 7.49284 7.62886 7.86175 7.91708 8.35384 9.05862 9.50999 9.93415 10.61624 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.007039 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.792365 B = 3977.009912 C = 5425.317669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.099 3.901 3 O -0.542 6.542 4 C -0.105 4.105 5 C -0.109 4.109 6 H 0.114 0.886 7 C 0.484 3.516 8 O -0.605 6.605 9 N -0.431 5.431 10 C -0.333 4.333 11 H 0.090 0.910 12 C 0.044 3.956 13 N -0.859 5.859 14 Si 0.907 3.093 15 H -0.276 1.276 16 H -0.268 1.268 17 H -0.281 1.281 18 C 0.139 3.861 19 C -0.075 4.075 20 C -0.096 4.096 21 C -0.132 4.132 22 C -0.135 4.135 23 C -0.132 4.132 24 C -0.107 4.107 25 C -0.140 4.140 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.372 0.628 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.271 0.729 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.086 0.914 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.054 2.026 5.538 9.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.059 3.941 3 O -0.347 6.347 4 C -0.142 4.142 5 C -0.130 4.130 6 H 0.132 0.868 7 C 0.273 3.727 8 O -0.491 6.491 9 N -0.147 5.147 10 C -0.461 4.461 11 H 0.108 0.892 12 C -0.162 4.162 13 N -0.496 5.496 14 Si 0.733 3.267 15 H -0.201 1.201 16 H -0.192 1.192 17 H -0.206 1.206 18 C 0.016 3.984 19 C -0.076 4.076 20 C -0.115 4.115 21 C -0.150 4.150 22 C -0.154 4.154 23 C -0.150 4.150 24 C -0.125 4.125 25 C -0.179 4.179 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.219 0.781 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.141 0.859 40 H 0.104 0.896 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.852 1.248 4.773 8.444 hybrid contribution 0.536 0.739 1.108 1.436 sum -6.317 1.988 5.881 8.856 Atomic orbital electron populations 1.22269 0.95290 1.02735 1.01942 1.22266 0.91201 0.82608 0.98065 1.86540 1.65676 1.21965 1.60532 1.22969 0.97776 0.97193 0.96308 1.22367 0.98053 0.95831 0.96762 0.86824 1.20207 0.83407 0.89657 0.79413 1.90473 1.51700 1.55592 1.51344 1.43381 1.12814 1.04318 1.54201 1.19378 0.86059 1.01233 1.39414 0.89248 1.25298 0.98348 0.97054 0.95470 1.69853 1.17120 1.34774 1.27825 0.86243 0.80181 0.79429 0.80850 1.20141 1.19218 1.20613 1.20488 1.04416 0.82774 0.90754 1.20639 0.93464 0.95952 0.97567 1.21116 0.99976 0.98079 0.92329 1.21054 0.96233 1.00479 0.97197 1.20956 0.94351 1.01789 0.98269 1.21036 0.99063 1.01460 0.93465 1.21258 0.96077 0.97964 0.97235 1.23502 0.98167 0.99288 0.96929 0.91161 0.92673 0.92021 0.78111 0.91098 0.87974 0.91902 0.91726 0.86493 0.86248 0.86944 0.87145 0.87036 0.85939 0.89574 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.45 37.16 0.35 -1.64 16 2 C 0.10 1.51 1.82 -89.72 -0.16 1.34 16 3 O -0.54 -7.94 13.41 -35.23 -0.47 -8.41 16 4 C -0.10 -1.89 6.93 -25.92 -0.18 -2.07 16 5 C -0.11 -2.24 3.33 -90.96 -0.30 -2.54 16 6 H 0.11 2.48 6.57 -51.93 -0.34 2.14 16 7 C 0.48 11.65 7.04 -10.99 -0.08 11.57 16 8 O -0.60 -15.41 15.38 5.55 0.09 -15.32 16 9 N -0.43 -10.69 2.52 -116.09 -0.29 -10.98 16 10 C -0.33 -8.33 8.41 -14.93 -0.13 -8.45 16 11 H 0.09 2.19 6.79 -52.48 -0.36 1.83 16 12 C 0.04 1.09 4.97 -17.47 -0.09 1.00 16 13 N -0.86 -22.18 11.31 55.50 0.63 -21.56 16 14 Si 0.91 19.20 29.61 -169.99 -5.03 14.17 16 15 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 18 C 0.14 3.32 5.17 -5.19 -0.03 3.29 16 19 C -0.07 -1.60 5.46 -104.63 -0.57 -2.17 16 20 C -0.10 -1.91 9.70 -39.59 -0.38 -2.29 16 21 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 22 C -0.14 -2.15 10.05 -39.58 -0.40 -2.55 16 23 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 24 C -0.11 -2.11 9.70 -39.58 -0.38 -2.49 16 25 C -0.14 -2.41 7.02 -25.83 -0.18 -2.60 16 26 H 0.07 0.86 7.95 -51.92 -0.41 0.45 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.37 3.68 9.04 45.56 0.41 4.10 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.10 1.89 7.34 -51.93 -0.38 1.51 16 32 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.06 1.59 7.30 -51.93 -0.38 1.21 16 34 H 0.12 2.95 5.30 -51.93 -0.27 2.67 16 35 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 36 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 37 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.12 2.50 7.83 -52.48 -0.41 2.09 16 40 H 0.09 1.51 7.92 -51.93 -0.41 1.10 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -28.97 341.86 -8.33 -37.30 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -5.07 Total: 14.50 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -3.33 Total: -14.85 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.34 Total: -32.54 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.39 Total: -23.73 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.97 -8.33 -37.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185467466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.496 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds