Wall clock time and date at job start Tue Mar 31 2020 07:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 112.90363 * 2 1 4 4 C 1.53780 * 113.61147 * 228.75277 * 2 1 3 5 5 C 1.53785 * 87.07920 * 220.01932 * 4 2 1 6 6 H 1.08998 * 113.61119 * 270.80101 * 5 4 2 7 7 C 1.50692 * 113.61649 * 139.98187 * 5 4 2 8 8 O 1.21294 * 120.00290 * 335.68048 * 7 5 4 9 9 N 1.34779 * 120.00018 * 155.67855 * 7 5 4 10 10 C 1.37094 * 120.00048 * 354.94677 * 9 7 5 11 11 H 1.08007 * 119.99602 * 35.06263 * 10 9 7 12 12 C 1.38951 * 120.00428 * 215.05885 * 10 9 7 13 13 N 1.31407 * 119.99697 * 21.89549 * 12 10 9 14 14 Si 1.86798 * 119.99833 * 201.89523 * 12 10 9 15 15 H 1.48495 * 109.47314 * 269.99682 * 14 12 10 16 16 H 1.48496 * 109.47458 * 30.00412 * 14 12 10 17 17 H 1.48509 * 109.47050 * 150.00264 * 14 12 10 18 18 C 1.46500 * 120.00067 * 174.94989 * 9 7 5 19 19 C 1.50697 * 109.47303 * 269.99913 * 18 9 7 20 20 C 1.38231 * 120.00331 * 269.73077 * 19 18 9 21 21 C 1.38235 * 120.00124 * 179.74271 * 20 19 18 22 22 C 1.38235 * 120.00037 * 0.54765 * 21 20 19 23 23 C 1.38242 * 119.99596 * 359.70777 * 22 21 20 24 24 C 1.38228 * 120.00190 * 0.02562 * 23 22 21 25 25 C 1.53777 * 87.17256 * 25.38878 * 5 4 2 26 26 H 1.09007 * 109.46862 * 191.25273 * 1 2 3 27 27 H 1.08995 * 109.46820 * 311.24516 * 1 2 3 28 28 H 1.08994 * 109.47285 * 71.25313 * 1 2 3 29 29 H 0.96699 * 114.00120 * 48.75765 * 3 2 1 30 30 H 1.08994 * 113.61602 * 105.47124 * 4 2 1 31 31 H 1.09002 * 113.61643 * 334.56461 * 4 2 1 32 32 H 0.97002 * 119.99593 * 176.60110 * 13 12 10 33 33 H 1.09007 * 109.47138 * 30.00469 * 18 9 7 34 34 H 1.09004 * 109.46804 * 150.00043 * 18 9 7 35 35 H 1.08003 * 119.99928 * 359.97438 * 20 19 18 36 36 H 1.08005 * 119.99781 * 180.26868 * 21 20 19 37 37 H 1.07993 * 120.00304 * 179.72210 * 22 21 20 38 38 H 1.08000 * 119.99792 * 180.02562 * 23 22 21 39 39 H 1.08004 * 120.00104 * 179.97438 * 24 23 22 40 40 H 1.09002 * 113.61014 * 89.16156 * 25 5 4 41 41 H 1.09002 * 113.61621 * 220.06279 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0862 1.3163 0.0000 4 6 2.1460 -0.9290 -1.0594 5 6 3.1924 -1.3136 -0.0001 6 1 4.0717 -0.6696 -0.0010 7 6 3.5408 -2.7797 -0.0001 8 8 2.7505 -3.5909 -0.4346 9 7 4.7305 -3.1897 0.4825 10 6 5.6647 -2.2672 0.8774 11 1 5.3496 -1.3439 1.3408 12 6 7.0169 -2.5201 0.6816 13 7 7.3979 -3.3867 -0.2298 14 14 8.2929 -1.6283 1.7139 15 1 8.6849 -0.3669 1.0353 16 1 7.7200 -1.3154 3.0477 17 1 9.4885 -2.4935 1.8793 18 6 5.0255 -4.6210 0.5852 19 6 4.5876 -5.1286 1.9348 20 6 5.4696 -5.1118 2.9991 21 6 5.0662 -5.5725 4.2384 22 6 3.7844 -6.0606 4.4107 23 6 2.9041 -6.0823 3.3451 24 6 3.3057 -5.6165 2.1072 25 6 2.1481 -0.9286 1.0610 26 1 -0.3633 -1.0080 0.2006 27 1 -0.3633 0.6775 0.7727 28 1 -0.3633 0.3303 -0.9731 29 1 1.7028 1.9053 0.6642 30 1 2.5650 -0.3988 -1.9146 31 1 1.4945 -1.7535 -1.3491 32 1 8.3424 -3.5271 -0.4007 33 1 4.4899 -5.1594 -0.1968 34 1 6.0974 -4.7804 0.4673 35 1 6.4727 -4.7352 2.8633 36 1 5.7540 -5.5553 5.0710 37 1 3.4706 -6.4247 5.3778 38 1 1.9025 -6.4632 3.4797 39 1 2.6180 -5.6338 1.2745 40 1 1.4971 -1.7530 1.3522 41 1 2.5687 -0.3980 1.9153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185467466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:51 Heat of formation + Delta-G solvation = -53.001675 kcal Electronic energy + Delta-G solvation = -23596.330090 eV Core-core repulsion = 20248.187282 eV Total energy + Delta-G solvation = -3348.142807 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.41988 -40.19894 -39.06815 -36.74702 -35.43017 -33.69884 -32.44587 -31.71041 -30.49891 -27.77569 -26.83334 -26.65944 -24.43992 -23.35022 -22.11758 -21.03365 -20.55518 -18.64160 -18.04957 -17.40870 -17.28602 -16.73756 -16.31079 -16.16003 -15.95548 -15.78716 -15.46046 -14.83612 -14.64234 -14.24540 -14.13430 -13.74109 -13.68529 -13.56837 -13.24563 -13.13263 -12.94562 -12.75966 -12.60449 -12.50924 -12.24036 -12.07951 -11.94461 -11.82045 -11.73294 -11.24441 -11.02473 -10.72338 -10.24978 -9.76290 -9.56549 -9.46374 -8.31622 -6.03023 0.49875 0.56007 1.37594 1.44704 1.55918 1.97872 2.30302 2.80165 3.04746 3.12509 3.26723 3.51696 3.72640 3.97841 4.02035 4.05675 4.15121 4.23025 4.35556 4.45125 4.52195 4.68676 4.70447 4.73631 4.76847 4.80014 4.85454 4.90052 5.04245 5.14764 5.18773 5.21539 5.28691 5.33904 5.44651 5.49984 5.63297 5.64544 5.88881 6.02172 6.20246 6.41122 6.94503 7.11886 7.60206 8.02812 8.71472 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.007039 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.792365 B = 3977.009912 C = 5425.317669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 O -0.555 6.555 4 C -0.109 4.109 5 C -0.120 4.120 6 H 0.097 0.903 7 C 0.470 3.530 8 O -0.629 6.629 9 N -0.441 5.441 10 C -0.347 4.347 11 H 0.092 0.908 12 C 0.007 3.993 13 N -0.892 5.892 14 Si 0.973 3.027 15 H -0.273 1.273 16 H -0.260 1.260 17 H -0.278 1.278 18 C 0.145 3.855 19 C -0.099 4.099 20 C -0.114 4.114 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.132 4.132 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.396 0.604 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.273 0.727 33 H 0.038 0.962 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.144 0.856 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.118 2.999 8.552 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.081 3.919 3 O -0.364 6.364 4 C -0.147 4.147 5 C -0.141 4.141 6 H 0.115 0.885 7 C 0.260 3.740 8 O -0.518 6.518 9 N -0.157 5.157 10 C -0.474 4.474 11 H 0.109 0.891 12 C -0.196 4.196 13 N -0.529 5.529 14 Si 0.796 3.204 15 H -0.198 1.198 16 H -0.184 1.184 17 H -0.203 1.203 18 C 0.022 3.978 19 C -0.100 4.100 20 C -0.133 4.133 21 C -0.143 4.143 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.171 4.171 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.246 0.754 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.161 0.839 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.927 2.238 7.801 11.345 hybrid contribution 0.862 0.379 0.157 0.954 sum -7.066 2.617 7.958 10.959 Atomic orbital electron populations 1.22211 0.92293 1.03473 1.03598 1.21952 0.93039 0.82247 0.94628 1.86491 1.66402 1.21785 1.61683 1.22968 0.97194 0.98022 0.96522 1.22408 0.98700 0.92828 1.00187 0.88511 1.20921 0.83045 0.91214 0.78784 1.90434 1.52297 1.56659 1.52383 1.43618 1.13158 1.04661 1.54266 1.19585 0.86549 1.01539 1.39730 0.89084 1.26083 0.99852 0.97735 0.95957 1.69963 1.17568 1.36218 1.29172 0.85247 0.77585 0.78191 0.79393 1.19812 1.18389 1.20265 1.20288 1.02780 0.82637 0.92143 1.20416 0.94880 0.98153 0.96588 1.21094 0.99226 0.99517 0.93458 1.21419 0.97462 0.98829 0.96562 1.21447 0.93230 0.99641 0.99631 1.21384 1.00775 0.99960 0.92196 1.21183 0.95224 0.99499 0.98414 1.23477 0.96903 0.99728 0.96962 0.91483 0.89713 0.91115 0.75383 0.91481 0.88770 0.91737 0.94365 0.88324 0.87655 0.83639 0.82651 0.83856 0.87908 0.90046 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 9.45 71.98 0.68 -2.71 16 2 C 0.12 3.53 1.82 -10.21 -0.02 3.51 16 3 O -0.56 -15.02 13.41 -148.98 -2.00 -17.02 16 4 C -0.11 -4.00 6.93 31.12 0.22 -3.79 16 5 C -0.12 -5.09 3.33 -11.02 -0.04 -5.13 16 6 H 0.10 4.39 6.57 -2.39 -0.02 4.38 16 7 C 0.47 23.85 7.04 87.65 0.62 24.47 16 8 O -0.63 -34.03 15.38 -3.07 -0.05 -34.08 16 9 N -0.44 -23.12 2.52 -639.59 -1.61 -24.73 16 10 C -0.35 -17.97 8.41 84.04 0.71 -17.27 16 11 H 0.09 4.58 6.79 -2.91 -0.02 4.56 16 12 C 0.01 0.33 4.97 84.93 0.42 0.76 16 13 N -0.89 -48.04 11.31 21.66 0.25 -47.79 16 14 Si 0.97 39.78 29.61 68.60 2.03 41.82 16 15 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 16 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 17 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 18 C 0.14 7.43 5.17 85.63 0.44 7.88 16 19 C -0.10 -4.40 5.46 -19.87 -0.11 -4.51 16 20 C -0.11 -4.54 9.70 22.27 0.22 -4.33 16 21 C -0.12 -3.89 10.05 22.27 0.22 -3.66 16 22 C -0.12 -3.37 10.05 22.27 0.22 -3.14 16 23 C -0.13 -3.93 10.05 22.27 0.22 -3.71 16 24 C -0.12 -5.01 9.70 22.27 0.22 -4.80 16 25 C -0.13 -4.48 7.02 31.18 0.22 -4.26 16 26 H 0.07 1.50 7.95 -2.38 -0.02 1.48 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.40 6.52 9.04 -74.06 -0.67 5.85 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.09 3.59 7.34 -2.39 -0.02 3.57 16 32 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 33 H 0.04 2.07 7.30 -2.38 -0.02 2.05 16 34 H 0.10 5.36 5.30 -2.38 -0.01 5.35 16 35 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 36 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 37 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 38 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.10 4.46 7.83 -2.91 -0.02 4.43 16 40 H 0.08 2.84 7.92 -2.39 -0.02 2.82 16 41 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -66.39 341.86 3.23 -63.16 By element: Atomic # 1 Polarization: 38.98 SS G_CDS: 0.37 Total: 39.34 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 4.24 Total: -20.70 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: -1.37 Total: -72.53 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -2.05 Total: -51.10 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.82 kcal Total: -66.39 3.23 -63.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185467466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.161 kcal (2) G-P(sol) polarization free energy of solvation -66.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds