Wall clock time and date at job start Tue Mar 31 2020 06:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37721 * 120.04248 * 2 1 4 4 C 1.38981 * 120.08679 * 180.25395 * 3 2 1 5 5 O 1.35713 * 119.91267 * 179.76381 * 4 3 2 6 6 C 1.39016 * 120.17415 * 359.78497 * 4 3 2 7 7 C 1.37680 * 120.08998 * 0.02562 * 6 4 3 8 8 C 1.39705 * 120.04407 * 179.80966 * 2 1 3 9 9 C 1.47605 * 120.09168 * 359.97438 * 8 2 1 10 10 O 1.21591 * 119.99350 * 353.46900 * 9 8 2 11 11 N 1.34773 * 120.00030 * 173.18932 * 9 8 2 12 12 C 1.46499 * 119.99698 * 180.27810 * 11 9 8 13 13 H 1.08999 * 109.41445 * 324.85789 * 12 11 9 14 14 C 1.52961 * 109.41556 * 84.64458 * 12 11 9 15 15 C 1.53236 * 109.40408 * 183.70168 * 14 12 11 16 16 C 1.51266 * 108.53820 * 305.37374 * 15 14 12 17 17 C 1.37869 * 120.85071 * 231.32462 * 16 15 14 18 18 N 1.31519 * 120.00288 * 180.02562 * 17 16 15 19 19 Si 1.86795 * 120.00346 * 0.02616 * 17 16 15 20 20 H 1.48500 * 109.47224 * 89.99704 * 19 17 16 21 21 H 1.48494 * 109.47619 * 210.00266 * 19 17 16 22 22 H 1.48501 * 109.46739 * 330.00008 * 19 17 16 23 23 C 1.51270 * 118.29832 * 51.35198 * 16 15 14 24 24 C 1.52962 * 109.41490 * 205.00175 * 12 11 9 25 25 H 1.09009 * 109.46982 * 263.58383 * 1 2 3 26 26 H 1.09000 * 109.47440 * 23.57568 * 1 2 3 27 27 H 1.08997 * 109.47552 * 143.58626 * 1 2 3 28 28 H 1.08003 * 119.95961 * 0.04280 * 3 2 1 29 29 H 0.96696 * 113.99913 * 270.02547 * 5 4 3 30 30 H 1.08000 * 119.95129 * 179.97438 * 6 4 3 31 31 H 1.07993 * 120.04416 * 180.02562 * 7 6 4 32 32 H 0.96998 * 120.00002 * 0.27590 * 11 9 8 33 33 H 1.08999 * 109.48494 * 303.68591 * 14 12 11 34 34 H 1.09004 * 109.47656 * 63.72751 * 14 12 11 35 35 H 1.08999 * 109.62453 * 185.66045 * 15 14 12 36 36 H 1.09000 * 109.78233 * 65.18524 * 15 14 12 37 37 H 0.96993 * 120.00609 * 180.02562 * 18 17 16 38 38 H 1.08999 * 109.62621 * 188.93828 * 23 16 15 39 39 H 1.08999 * 109.79006 * 68.45810 * 23 16 15 40 40 H 1.09004 * 109.47953 * 296.27803 * 24 12 11 41 41 H 1.09004 * 109.47916 * 56.31622 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1922 0.0000 4 6 3.5863 1.1933 -0.0053 5 8 4.2621 2.3701 -0.0102 6 6 4.2860 -0.0080 -0.0062 7 6 3.6040 -1.2040 -0.0023 8 6 2.2065 -1.2093 0.0040 9 6 1.4715 -2.4894 0.0088 10 8 0.2615 -2.4951 0.1291 11 7 2.1409 -3.6513 -0.1257 12 6 1.4107 -4.9214 -0.1270 13 1 0.5647 -4.8536 0.5569 14 6 0.8991 -5.2123 -1.5389 15 6 0.0574 -6.4927 -1.5216 16 6 0.8860 -7.6047 -0.9175 17 6 1.0261 -8.8138 -1.5650 18 7 1.7501 -9.7694 -1.0242 19 14 0.1877 -9.0949 -3.2104 20 1 1.1002 -8.6838 -4.3075 21 1 -0.1453 -10.5346 -3.3568 22 1 -1.0583 -8.2896 -3.2749 23 6 1.5564 -7.3564 0.4156 24 6 2.3437 -6.0448 0.3282 25 1 -0.3633 -0.1149 1.0213 26 1 -0.3634 0.9419 -0.4110 27 1 -0.3634 -0.8270 -0.6100 28 1 1.6565 2.1275 0.0007 29 1 4.4543 2.7097 -0.8949 30 1 5.3659 -0.0029 -0.0107 31 1 4.1483 -2.1368 -0.0025 32 1 3.1061 -3.6467 -0.2217 33 1 0.2862 -4.3789 -1.8824 34 1 1.7459 -5.3429 -2.2126 35 1 -0.2253 -6.7587 -2.5401 36 1 -0.8392 -6.3368 -0.9217 37 1 1.8490 -10.6199 -1.4799 38 1 2.2368 -8.1774 0.6418 39 1 0.8026 -7.2794 1.1991 40 1 3.1564 -6.1557 -0.3898 41 1 2.7547 -5.8014 1.3080 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186195771.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:52 Heat of formation + Delta-G solvation = -92.057065 kcal Electronic energy + Delta-G solvation = -22728.127897 eV Core-core repulsion = 19378.291521 eV Total energy + Delta-G solvation = -3349.836376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.55086 -40.16324 -38.56883 -37.45080 -35.54889 -33.83473 -33.10531 -31.53488 -31.20050 -29.04572 -27.90941 -24.85693 -23.87169 -23.37532 -22.56891 -21.48272 -21.20595 -19.03093 -18.86622 -17.87398 -17.44057 -16.42727 -16.37332 -16.34085 -16.05948 -15.89170 -15.09255 -14.80856 -14.55095 -14.34134 -14.15099 -13.97863 -13.93305 -13.71650 -13.52866 -13.24365 -12.79403 -12.75244 -12.68735 -12.62833 -12.54150 -11.90619 -11.81789 -11.49106 -11.46374 -10.98705 -10.75103 -10.57217 -10.49537 -9.97653 -9.89253 -9.56850 -8.17709 -6.11818 -0.25549 0.30126 1.37632 1.41980 1.50392 1.81166 2.21751 2.40853 2.72089 3.10783 3.19362 3.74069 3.78395 3.85882 4.06158 4.19825 4.22834 4.40236 4.49027 4.58537 4.70273 4.76108 4.80124 4.86064 4.90753 4.95896 5.06871 5.12250 5.15706 5.20757 5.22922 5.27024 5.32737 5.54137 5.55776 5.59659 5.69925 5.73788 5.75834 5.82347 6.34620 6.63689 6.82677 6.93812 7.28717 7.46555 8.92934 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030573 B = 0.003439 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.627339 B = 8139.676528 C = 8437.726482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.020 4.020 3 C -0.162 4.162 4 C 0.140 3.860 5 O -0.505 6.505 6 C -0.160 4.160 7 C -0.061 4.061 8 C -0.168 4.168 9 C 0.549 3.451 10 O -0.570 6.570 11 N -0.709 5.709 12 C 0.167 3.833 13 H 0.057 0.943 14 C -0.105 4.105 15 C -0.015 4.015 16 C -0.500 4.500 17 C 0.026 3.974 18 N -0.928 5.928 19 Si 0.939 3.061 20 H -0.270 1.270 21 H -0.291 1.291 22 H -0.260 1.260 23 C 0.009 3.991 24 C -0.101 4.101 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.417 0.583 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.409 0.591 33 H 0.040 0.960 34 H 0.056 0.944 35 H 0.032 0.968 36 H 0.012 0.988 37 H 0.264 0.736 38 H 0.034 0.966 39 H -0.004 1.004 40 H 0.059 0.941 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.672 22.537 -0.822 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.021 4.021 3 C -0.180 4.180 4 C 0.095 3.905 5 O -0.319 6.319 6 C -0.179 4.179 7 C -0.079 4.079 8 C -0.171 4.171 9 C 0.339 3.661 10 O -0.451 6.451 11 N -0.360 5.360 12 C 0.063 3.937 13 H 0.075 0.925 14 C -0.144 4.144 15 C -0.053 4.053 16 C -0.519 4.519 17 C -0.173 4.173 18 N -0.568 5.568 19 Si 0.765 3.235 20 H -0.196 1.196 21 H -0.218 1.218 22 H -0.185 1.185 23 C -0.029 4.029 24 C -0.139 4.139 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.168 0.832 29 H 0.278 0.722 30 H 0.176 0.824 31 H 0.168 0.832 32 H 0.246 0.754 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.015 0.985 40 H 0.077 0.923 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.870 22.283 -0.168 23.043 hybrid contribution -0.055 -0.772 -1.176 1.408 sum 5.816 21.510 -1.344 22.323 Atomic orbital electron populations 1.21007 0.90142 1.03203 1.03008 1.20022 0.96997 0.91459 0.93616 1.21440 0.93880 0.98242 1.04488 1.18766 0.89732 0.85924 0.96074 1.84698 1.76118 1.35299 1.35809 1.21582 1.01948 0.90937 1.03402 1.21411 0.91846 0.99693 0.94986 1.19859 0.94603 0.92379 1.10242 1.18626 0.87006 0.84526 0.75973 1.90715 1.15316 1.87624 1.51484 1.46070 1.11419 1.05355 1.73177 1.20644 0.94478 0.81727 0.96852 0.92494 1.21782 0.99324 0.97036 0.96282 1.19712 0.95229 0.93720 0.96637 1.20584 1.28950 0.97335 1.05049 1.25548 0.95626 0.95476 1.00623 1.69949 1.41046 1.05341 1.40423 0.85834 0.80026 0.76677 0.80953 1.19554 1.21796 1.18453 1.19293 0.95207 0.93737 0.94697 1.21706 0.97699 0.94867 0.99655 0.91377 0.90144 0.90910 0.83175 0.72233 0.82423 0.83161 0.75384 0.94118 0.92503 0.94975 0.96999 0.92703 0.94717 0.98532 0.92259 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 8.72 71.24 0.62 -2.23 16 2 C -0.02 -0.46 5.91 -19.63 -0.12 -0.58 16 3 C -0.16 -2.96 9.60 22.33 0.21 -2.75 16 4 C 0.14 2.28 6.71 22.63 0.15 2.43 16 5 O -0.50 -6.30 13.49 -90.35 -1.22 -7.52 16 6 C -0.16 -2.50 9.97 22.32 0.22 -2.28 16 7 C -0.06 -1.13 9.51 22.51 0.21 -0.92 16 8 C -0.17 -4.21 5.87 -20.08 -0.12 -4.33 16 9 C 0.55 17.52 7.65 86.72 0.66 18.19 16 10 O -0.57 -22.16 13.00 -4.00 -0.05 -22.21 16 11 N -0.71 -21.45 5.02 -445.75 -2.24 -23.69 16 12 C 0.17 6.36 2.35 44.97 0.11 6.46 16 13 H 0.06 2.45 7.58 -2.39 -0.02 2.44 16 14 C -0.11 -4.30 5.50 30.66 0.17 -4.13 16 15 C -0.01 -0.70 5.59 30.11 0.17 -0.53 16 16 C -0.50 -26.26 5.51 -16.18 -0.09 -26.35 16 17 C 0.03 1.41 5.46 84.65 0.46 1.87 16 18 N -0.93 -53.73 12.73 21.44 0.27 -53.46 16 19 Si 0.94 43.24 27.27 68.60 1.87 45.11 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 22 H -0.26 -11.57 6.46 99.48 0.64 -10.93 16 23 C 0.01 0.43 5.97 30.11 0.18 0.61 16 24 C -0.10 -3.97 5.40 30.66 0.17 -3.80 16 25 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.08 1.47 8.04 -2.39 -0.02 1.45 16 27 H 0.07 2.19 5.86 -2.39 -0.01 2.18 16 28 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 29 H 0.42 0.96 9.06 -74.06 -0.67 0.29 16 30 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.15 2.13 6.45 -2.91 -0.02 2.12 16 32 H 0.41 9.57 6.66 -92.71 -0.62 8.96 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.03 1.48 4.78 -2.39 -0.01 1.46 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.03 1.88 7.07 -2.39 -0.02 1.86 16 39 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -67.92 328.84 1.36 -66.56 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -0.28 Total: 13.54 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 3.01 Total: -18.34 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -1.97 Total: -77.14 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -1.27 Total: -29.72 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.87 Total: 45.11 kcal Total: -67.92 1.36 -66.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186195771.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.502 kcal (2) G-P(sol) polarization free energy of solvation -67.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds