Wall clock time and date at job start Tue Mar 31 2020 06:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37827 * 120.04974 * 2 1 4 4 C 1.38495 * 120.30301 * 179.97438 * 3 2 1 5 5 C 1.38108 * 120.39035 * 359.97438 * 4 3 2 6 6 C 1.38667 * 120.08118 * 359.76439 * 5 4 3 7 7 O 1.35652 * 120.14847 * 180.27747 * 6 5 4 8 8 C 1.39666 * 120.04284 * 179.97438 * 2 1 3 9 9 C 1.47545 * 120.19243 * 0.02562 * 8 2 1 10 10 O 1.21593 * 119.99524 * 90.00179 * 9 8 2 11 11 N 1.34775 * 120.00190 * 269.99939 * 9 8 2 12 12 C 1.46502 * 119.99964 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.41001 * 324.86072 * 12 11 9 14 14 C 1.52956 * 109.41045 * 84.64709 * 12 11 9 15 15 C 1.53232 * 109.40174 * 183.70128 * 14 12 11 16 16 C 1.51337 * 108.68817 * 305.48622 * 15 14 12 17 17 C 1.37879 * 120.89097 * 231.22455 * 16 15 14 18 18 N 1.31513 * 120.00135 * 179.77588 * 17 16 15 19 19 Si 1.86802 * 119.99863 * 359.78001 * 17 16 15 20 20 H 1.48503 * 109.47361 * 90.00059 * 19 17 16 21 21 H 1.48501 * 109.46976 * 210.00064 * 19 17 16 22 22 H 1.48500 * 109.47432 * 329.99708 * 19 17 16 23 23 C 1.51266 * 118.25863 * 51.00749 * 16 15 14 24 24 C 1.52955 * 109.41043 * 205.00276 * 12 11 9 25 25 H 1.09001 * 109.47233 * 270.02773 * 1 2 3 26 26 H 1.09003 * 109.46666 * 30.02404 * 1 2 3 27 27 H 1.08997 * 109.47090 * 150.02078 * 1 2 3 28 28 H 1.08003 * 119.84727 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.80852 * 179.97438 * 4 3 2 30 30 H 1.07993 * 119.96034 * 180.02562 * 5 4 3 31 31 H 0.96699 * 113.99965 * 270.22819 * 7 6 5 32 32 H 0.97003 * 119.99902 * 0.02562 * 11 9 8 33 33 H 1.09000 * 109.48686 * 303.68625 * 14 12 11 34 34 H 1.09000 * 109.47922 * 63.71416 * 14 12 11 35 35 H 1.09005 * 109.62412 * 65.09153 * 15 14 12 36 36 H 1.09004 * 109.62449 * 185.46783 * 15 14 12 37 37 H 0.96993 * 119.99774 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.62649 * 189.17517 * 23 16 15 39 39 H 1.09001 * 109.62544 * 68.79863 * 23 16 15 40 40 H 1.09001 * 109.48702 * 56.31644 * 24 12 11 41 41 H 1.09003 * 109.49443 * 296.27832 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1930 0.0000 4 6 3.5822 1.1991 0.0005 5 6 4.2861 0.0109 0.0016 6 6 3.6080 -1.1986 0.0071 7 8 4.2981 -2.3665 0.0138 8 6 2.2063 -1.2090 0.0005 9 6 1.4738 -2.4898 0.0005 10 8 1.1725 -3.0178 -1.0525 11 7 1.1388 -3.0746 1.1677 12 6 0.4110 -4.3460 1.1677 13 1 -0.2823 -4.3665 0.3268 14 6 1.4051 -5.5007 1.0334 15 6 0.6384 -6.8242 0.9403 16 6 -0.2871 -6.9333 2.1327 17 6 -0.2912 -8.0619 2.9247 18 7 -1.0997 -8.1363 3.9593 19 14 0.8517 -9.4853 2.5282 20 1 2.1430 -9.2954 3.2365 21 1 0.2278 -10.7587 2.9693 22 1 1.0927 -9.5335 1.0637 23 6 -1.2044 -5.7694 2.4361 24 6 -0.3709 -4.4842 2.4749 25 1 -0.3634 0.0005 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8901 -0.5135 28 1 1.6555 2.1274 -0.0004 29 1 4.1149 2.1386 0.0001 30 1 5.3660 0.0238 0.0024 31 1 4.5021 -2.7079 -0.8676 32 1 1.3790 -2.6532 2.0078 33 1 2.0031 -5.3628 0.1325 34 1 2.0597 -5.5201 1.9047 35 1 0.0515 -6.8435 0.0220 36 1 1.3427 -7.6562 0.9422 37 1 -1.1023 -8.9301 4.5167 38 1 -1.6845 -5.9238 3.4025 39 1 -1.9642 -5.6897 1.6586 40 1 -1.0318 -3.6258 2.5958 41 1 0.3254 -4.5277 3.3124 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188655731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:54 Heat of formation + Delta-G solvation = -75.827502 kcal Electronic energy + Delta-G solvation = -23139.875541 eV Core-core repulsion = 19790.742932 eV Total energy + Delta-G solvation = -3349.132609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52705 -38.74973 -37.06555 -36.62155 -33.66763 -32.78772 -31.57066 -30.26562 -29.63613 -27.47922 -26.97114 -23.88357 -22.18727 -21.75201 -21.46128 -20.05110 -19.49825 -18.22093 -17.50341 -16.33647 -16.04606 -15.81339 -15.53121 -14.86873 -14.43339 -14.00650 -13.83721 -13.68631 -13.48181 -13.12403 -12.84792 -12.68713 -12.24085 -12.07007 -12.04288 -11.93324 -11.80968 -11.65634 -11.00681 -10.88207 -10.79083 -10.69995 -10.14001 -9.97414 -9.73731 -9.54382 -9.00261 -8.98206 -8.83201 -8.80404 -8.45705 -8.30585 -6.09673 -4.00015 0.88445 1.02771 2.84028 3.25292 3.29090 3.37483 3.40511 3.60150 3.99954 4.40230 4.58975 4.65075 4.83796 5.04464 5.11236 5.19021 5.31700 5.48050 5.54516 5.60142 5.75373 5.89629 5.94802 6.08269 6.10866 6.21193 6.26225 6.49182 6.50353 6.53568 6.72777 6.78508 6.91448 6.97505 7.11707 7.25015 7.45709 7.47601 7.65573 7.71975 7.77050 7.93326 8.39050 8.51671 8.96915 9.55775 10.99940 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027503 B = 0.004024 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.829743 B = 6956.562625 C = 7506.925872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.035 4.035 3 C -0.134 4.134 4 C -0.089 4.089 5 C -0.155 4.155 6 C 0.144 3.856 7 O -0.492 6.492 8 C -0.150 4.150 9 C 0.566 3.434 10 O -0.541 6.541 11 N -0.710 5.710 12 C 0.154 3.846 13 H 0.078 0.922 14 C -0.112 4.112 15 C -0.013 4.013 16 C -0.488 4.488 17 C 0.076 3.924 18 N -0.891 5.891 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.267 1.267 23 C 0.013 3.987 24 C -0.114 4.114 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.396 0.604 32 H 0.395 0.605 33 H 0.037 0.963 34 H 0.051 0.949 35 H 0.019 0.981 36 H 0.030 0.970 37 H 0.264 0.736 38 H 0.060 0.940 39 H 0.006 0.994 40 H 0.035 0.965 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 18.435 -5.961 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.036 4.036 3 C -0.152 4.152 4 C -0.107 4.107 5 C -0.174 4.174 6 C 0.098 3.902 7 O -0.303 6.303 8 C -0.153 4.153 9 C 0.351 3.649 10 O -0.419 6.419 11 N -0.358 5.358 12 C 0.051 3.949 13 H 0.096 0.904 14 C -0.151 4.151 15 C -0.051 4.051 16 C -0.507 4.507 17 C -0.126 4.126 18 N -0.529 5.529 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.192 1.192 23 C -0.024 4.024 24 C -0.153 4.153 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.254 0.746 32 H 0.229 0.771 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.024 0.976 40 H 0.054 0.946 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.752 17.954 -5.943 20.439 hybrid contribution 0.976 -0.635 -0.158 1.175 sum 8.728 17.320 -6.101 20.331 Atomic orbital electron populations 1.20924 0.90339 1.03697 1.03144 1.19844 0.96350 0.91225 0.96184 1.20975 0.94221 0.97400 1.02616 1.21111 0.94079 0.97760 0.97774 1.21354 1.00634 0.91558 1.03834 1.18428 0.88098 0.85951 0.97696 1.84749 1.74958 1.36577 1.33976 1.20390 0.93579 0.94403 1.06958 1.17962 0.78699 0.83626 0.84597 1.90802 1.54902 1.64919 1.31279 1.46421 1.57305 1.24454 1.07592 1.21098 0.93286 0.80635 0.99864 0.90387 1.21890 0.97413 0.96475 0.99334 1.19728 0.95378 0.92640 0.97383 1.20055 1.19965 1.00863 1.09843 1.24829 0.95498 0.97824 0.94476 1.69829 1.37639 1.28946 1.16443 0.86656 0.80970 0.81741 0.79003 1.20426 1.21649 1.19161 1.19330 0.94152 0.90080 0.98871 1.21935 0.98604 0.99807 0.94909 0.90298 0.90808 0.90771 0.85283 0.85331 0.84990 0.74646 0.77133 0.94447 0.92987 0.96302 0.95106 0.92603 0.92094 0.97575 0.94587 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.62 36.01 0.35 -0.99 16 2 C -0.04 -0.41 5.91 -104.24 -0.62 -1.03 16 3 C -0.13 -1.25 9.68 -39.64 -0.38 -1.63 16 4 C -0.09 -0.77 10.03 -39.53 -0.40 -1.17 16 5 C -0.16 -1.56 9.98 -39.47 -0.39 -1.95 16 6 C 0.14 1.83 6.72 -38.70 -0.26 1.57 16 7 O -0.49 -6.34 12.95 -18.66 -0.24 -6.58 16 8 C -0.15 -2.10 5.64 -104.84 -0.59 -2.69 16 9 C 0.57 9.73 5.21 -12.47 -0.06 9.67 16 10 O -0.54 -11.23 16.77 5.28 0.09 -11.14 16 11 N -0.71 -12.03 5.07 -54.89 -0.28 -12.31 16 12 C 0.15 3.08 2.35 -67.98 -0.16 2.92 16 13 H 0.08 1.71 7.58 -51.93 -0.39 1.32 16 14 C -0.11 -2.43 5.51 -26.63 -0.15 -2.58 16 15 C -0.01 -0.32 5.58 -27.45 -0.15 -0.47 16 16 C -0.49 -12.93 5.53 -98.89 -0.55 -13.48 16 17 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 18 N -0.89 -25.56 12.73 55.43 0.71 -24.85 16 19 Si 0.89 21.38 27.27 -169.99 -4.64 16.75 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.29 6.47 56.52 0.37 -5.92 16 23 C 0.01 0.33 5.96 -27.48 -0.16 0.17 16 24 C -0.11 -2.35 5.41 -26.63 -0.14 -2.50 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.07 0.97 7.08 -51.93 -0.37 0.60 16 28 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 29 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.40 3.68 9.06 45.56 0.41 4.09 16 32 H 0.40 5.89 8.58 -40.82 -0.35 5.54 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.03 0.74 4.81 -51.93 -0.25 0.49 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 39 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 335.80 15.07 5.06 5.06 Total: -1.00 -31.83 335.80 -8.21 -40.04 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.13 Total: 5.20 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -3.77 Total: -12.16 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.43 Total: -37.17 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.15 Total: -17.72 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.64 Total: 16.75 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.83 -8.21 -40.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188655731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.792 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds