Wall clock time and date at job start Tue Mar 31 2020 06:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37827 * 120.04974 * 2 1 4 4 C 1.38495 * 120.30301 * 179.97438 * 3 2 1 5 5 C 1.38108 * 120.39035 * 359.97438 * 4 3 2 6 6 C 1.38667 * 120.08118 * 359.76439 * 5 4 3 7 7 O 1.35652 * 120.14847 * 180.27747 * 6 5 4 8 8 C 1.39666 * 120.04284 * 179.97438 * 2 1 3 9 9 C 1.47545 * 120.19243 * 0.02562 * 8 2 1 10 10 O 1.21593 * 119.99524 * 90.00179 * 9 8 2 11 11 N 1.34775 * 120.00190 * 269.99939 * 9 8 2 12 12 C 1.46502 * 119.99964 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.41001 * 324.86072 * 12 11 9 14 14 C 1.52956 * 109.41045 * 84.64709 * 12 11 9 15 15 C 1.53232 * 109.40174 * 183.70128 * 14 12 11 16 16 C 1.51337 * 108.68817 * 305.48622 * 15 14 12 17 17 C 1.37879 * 120.89097 * 231.22455 * 16 15 14 18 18 N 1.31513 * 120.00135 * 179.77588 * 17 16 15 19 19 Si 1.86802 * 119.99863 * 359.78001 * 17 16 15 20 20 H 1.48503 * 109.47361 * 90.00059 * 19 17 16 21 21 H 1.48501 * 109.46976 * 210.00064 * 19 17 16 22 22 H 1.48500 * 109.47432 * 329.99708 * 19 17 16 23 23 C 1.51266 * 118.25863 * 51.00749 * 16 15 14 24 24 C 1.52955 * 109.41043 * 205.00276 * 12 11 9 25 25 H 1.09001 * 109.47233 * 270.02773 * 1 2 3 26 26 H 1.09003 * 109.46666 * 30.02404 * 1 2 3 27 27 H 1.08997 * 109.47090 * 150.02078 * 1 2 3 28 28 H 1.08003 * 119.84727 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.80852 * 179.97438 * 4 3 2 30 30 H 1.07993 * 119.96034 * 180.02562 * 5 4 3 31 31 H 0.96699 * 113.99965 * 270.22819 * 7 6 5 32 32 H 0.97003 * 119.99902 * 0.02562 * 11 9 8 33 33 H 1.09000 * 109.48686 * 303.68625 * 14 12 11 34 34 H 1.09000 * 109.47922 * 63.71416 * 14 12 11 35 35 H 1.09005 * 109.62412 * 65.09153 * 15 14 12 36 36 H 1.09004 * 109.62449 * 185.46783 * 15 14 12 37 37 H 0.96993 * 119.99774 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.62649 * 189.17517 * 23 16 15 39 39 H 1.09001 * 109.62544 * 68.79863 * 23 16 15 40 40 H 1.09001 * 109.48702 * 56.31644 * 24 12 11 41 41 H 1.09003 * 109.49443 * 296.27832 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1930 0.0000 4 6 3.5822 1.1991 0.0005 5 6 4.2861 0.0109 0.0016 6 6 3.6080 -1.1986 0.0071 7 8 4.2981 -2.3665 0.0138 8 6 2.2063 -1.2090 0.0005 9 6 1.4738 -2.4898 0.0005 10 8 1.1725 -3.0178 -1.0525 11 7 1.1388 -3.0746 1.1677 12 6 0.4110 -4.3460 1.1677 13 1 -0.2823 -4.3665 0.3268 14 6 1.4051 -5.5007 1.0334 15 6 0.6384 -6.8242 0.9403 16 6 -0.2871 -6.9333 2.1327 17 6 -0.2912 -8.0619 2.9247 18 7 -1.0997 -8.1363 3.9593 19 14 0.8517 -9.4853 2.5282 20 1 2.1430 -9.2954 3.2365 21 1 0.2278 -10.7587 2.9693 22 1 1.0927 -9.5335 1.0637 23 6 -1.2044 -5.7694 2.4361 24 6 -0.3709 -4.4842 2.4749 25 1 -0.3634 0.0005 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8901 -0.5135 28 1 1.6555 2.1274 -0.0004 29 1 4.1149 2.1386 0.0001 30 1 5.3660 0.0238 0.0024 31 1 4.5021 -2.7079 -0.8676 32 1 1.3790 -2.6532 2.0078 33 1 2.0031 -5.3628 0.1325 34 1 2.0597 -5.5201 1.9047 35 1 0.0515 -6.8435 0.0220 36 1 1.3427 -7.6562 0.9422 37 1 -1.1023 -8.9301 4.5167 38 1 -1.6845 -5.9238 3.4025 39 1 -1.9642 -5.6897 1.6586 40 1 -1.0318 -3.6258 2.5958 41 1 0.3254 -4.5277 3.3124 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188655731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:54 Heat of formation + Delta-G solvation = -97.776844 kcal Electronic energy + Delta-G solvation = -23140.827336 eV Core-core repulsion = 19790.742932 eV Total energy + Delta-G solvation = -3350.084404 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.61330 -40.00315 -38.36249 -37.89525 -35.39591 -33.78571 -33.23567 -31.55764 -31.22512 -29.03826 -28.00031 -25.09917 -23.72505 -23.31064 -22.71197 -21.38924 -21.22099 -19.17226 -18.73518 -17.86557 -17.30589 -17.24006 -16.45837 -16.40738 -15.94433 -15.38542 -15.06235 -14.88309 -14.61165 -14.50243 -14.37931 -14.10468 -13.95858 -13.63756 -13.54339 -12.83955 -12.81161 -12.75619 -12.70816 -12.61181 -12.55395 -11.97753 -11.87771 -11.73972 -11.53123 -11.13858 -10.81597 -10.67395 -10.55266 -9.96482 -9.85253 -9.59214 -8.19178 -6.13265 0.04429 0.24905 1.36750 1.40446 1.49201 1.51741 2.19247 2.39700 2.57017 3.09198 3.17005 3.65650 3.81094 3.98765 4.03803 4.15429 4.32890 4.34173 4.44644 4.59347 4.66517 4.68651 4.71711 4.80064 4.86733 4.92616 5.03748 5.07985 5.16142 5.18343 5.19579 5.30217 5.37799 5.47712 5.51715 5.53905 5.64014 5.73238 5.79178 5.82331 6.32864 6.52828 6.66836 6.91677 7.17350 7.44977 8.91493 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027503 B = 0.004024 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.829743 B = 6956.562625 C = 7506.925872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.045 4.045 3 C -0.128 4.128 4 C -0.076 4.076 5 C -0.155 4.155 6 C 0.127 3.873 7 O -0.509 6.509 8 C -0.180 4.180 9 C 0.572 3.428 10 O -0.584 6.584 11 N -0.702 5.702 12 C 0.166 3.834 13 H 0.058 0.942 14 C -0.104 4.104 15 C -0.014 4.014 16 C -0.501 4.501 17 C 0.027 3.973 18 N -0.927 5.927 19 Si 0.938 3.062 20 H -0.272 1.272 21 H -0.289 1.289 22 H -0.260 1.260 23 C 0.010 3.990 24 C -0.100 4.100 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.041 0.959 28 H 0.162 0.838 29 H 0.167 0.833 30 H 0.153 0.847 31 H 0.407 0.593 32 H 0.408 0.592 33 H 0.038 0.962 34 H 0.052 0.948 35 H 0.012 0.988 36 H 0.032 0.968 37 H 0.264 0.736 38 H 0.035 0.965 39 H -0.002 1.002 40 H 0.061 0.939 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.913 21.258 -6.254 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.046 4.046 3 C -0.146 4.146 4 C -0.093 4.093 5 C -0.173 4.173 6 C 0.082 3.918 7 O -0.322 6.322 8 C -0.183 4.183 9 C 0.359 3.641 10 O -0.465 6.465 11 N -0.351 5.351 12 C 0.062 3.938 13 H 0.076 0.924 14 C -0.143 4.143 15 C -0.052 4.052 16 C -0.520 4.520 17 C -0.172 4.172 18 N -0.566 5.566 19 Si 0.765 3.235 20 H -0.197 1.197 21 H -0.215 1.215 22 H -0.184 1.184 23 C -0.028 4.028 24 C -0.139 4.139 25 H 0.105 0.895 26 H 0.118 0.882 27 H 0.060 0.940 28 H 0.179 0.821 29 H 0.185 0.815 30 H 0.171 0.829 31 H 0.266 0.734 32 H 0.243 0.757 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.031 0.969 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.017 0.983 40 H 0.079 0.921 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.594 20.801 -6.233 23.740 hybrid contribution 0.389 -1.409 -0.107 1.466 sum 9.983 19.392 -6.341 22.713 Atomic orbital electron populations 1.20934 0.90115 1.03355 1.03548 1.20045 0.96738 0.91376 0.96459 1.21353 0.94789 0.97500 1.00954 1.21596 0.93975 0.98715 0.95062 1.21627 1.01781 0.90904 1.02992 1.18680 0.87714 0.86793 0.98657 1.84705 1.74997 1.37270 1.35219 1.20247 0.94157 0.93271 1.10648 1.18467 0.77718 0.84375 0.83551 1.90766 1.56567 1.66428 1.32695 1.46192 1.56984 1.23358 1.08533 1.20688 0.92744 0.81737 0.98612 0.92424 1.21762 0.97374 0.95813 0.99358 1.19721 0.95214 0.94169 0.96111 1.20580 1.20038 1.01218 1.10178 1.25535 0.96924 1.00097 0.94612 1.69943 1.39388 1.29682 1.17636 0.85839 0.79466 0.79092 0.79134 1.19728 1.21535 1.18430 1.19287 0.94394 0.92030 0.97092 1.21703 0.98447 0.98572 0.95131 0.89527 0.88214 0.93983 0.82073 0.81517 0.82930 0.73445 0.75687 0.94310 0.92897 0.96920 0.94930 0.92652 0.94608 0.98321 0.92088 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 9.62 71.24 0.69 -1.76 16 2 C -0.05 -0.97 5.91 -19.61 -0.12 -1.09 16 3 C -0.13 -1.86 9.68 22.23 0.22 -1.65 16 4 C -0.08 -0.96 10.03 22.30 0.22 -0.74 16 5 C -0.15 -2.60 9.98 22.34 0.22 -2.38 16 6 C 0.13 3.04 6.72 22.84 0.15 3.20 16 7 O -0.51 -12.78 12.95 -89.67 -1.16 -13.94 16 8 C -0.18 -4.88 5.64 -20.01 -0.11 -4.99 16 9 C 0.57 19.74 5.21 86.70 0.45 20.19 16 10 O -0.58 -24.85 16.77 -4.01 -0.07 -24.92 16 11 N -0.70 -23.63 5.07 -445.83 -2.26 -25.89 16 12 C 0.17 6.69 2.35 44.96 0.11 6.80 16 13 H 0.06 2.58 7.58 -2.39 -0.02 2.57 16 14 C -0.10 -4.51 5.51 30.66 0.17 -4.34 16 15 C -0.01 -0.68 5.58 30.13 0.17 -0.51 16 16 C -0.50 -26.91 5.53 -16.15 -0.09 -26.99 16 17 C 0.03 1.50 5.46 84.66 0.46 1.96 16 18 N -0.93 -54.33 12.73 21.45 0.27 -54.06 16 19 Si 0.94 44.04 27.27 68.60 1.87 45.91 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.26 -11.78 6.47 99.48 0.64 -11.13 16 23 C 0.01 0.50 5.96 30.11 0.18 0.68 16 24 C -0.10 -4.12 5.41 30.66 0.17 -3.95 16 25 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.10 1.40 8.09 -2.39 -0.02 1.38 16 27 H 0.04 1.10 7.08 -2.39 -0.02 1.09 16 28 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 29 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 30 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.41 7.50 9.06 -74.06 -0.67 6.83 16 32 H 0.41 11.78 8.58 -92.71 -0.80 10.99 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.03 1.54 4.81 -2.39 -0.01 1.53 16 37 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 38 H 0.04 1.97 7.07 -2.39 -0.02 1.95 16 39 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -70.47 335.80 1.07 -69.40 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.47 Total: 19.06 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 2.88 Total: -15.58 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -1.99 Total: -79.95 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -1.23 Total: -38.86 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.87 Total: 45.91 kcal Total: -70.47 1.07 -69.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188655731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.373 kcal (2) G-P(sol) polarization free energy of solvation -70.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds